View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21072_high_2 (Length: 804)
Name: NF21072_high_2
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 782; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 1 - 790
Target Start/End: Original strand, 183923 - 184712
Alignment:
| Q |
1 |
gctctatttttgcacattcctatttgttggattctggtttttaagttgggattaggacacattggagctgctttagctatcggaatttcttattggttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183923 |
gctctatttttgcacattcctatttgttggattctggtttttaagttgggattaggacacattggagctgctttagctatcggaatttcttattggttga |
184022 |
T |
|
| Q |
101 |
atgtgatttggctttgggtttatattaagtactctccatcatgtgaaaaaaccaagattgtgttttctactcatgctttacataacctaccagagttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
184023 |
atgtgatttggctttgggtttatattaagtactctccatcatgtgaaaaaaccaagattgtgttttctactcatgctttacataacctaccagagttctg |
184122 |
T |
|
| Q |
201 |
caaatatgctattccttctggactcatgttttggtaaattataatatctcattataaaacaatgctgcttcatttcattttagttttcttctactaattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
184123 |
caaatatgctattccttctggactcatgttttggtaaattataatatctcattataaaacaatgctgcttcatttcattttagttttcttctactaattt |
184222 |
T |
|
| Q |
301 |
caattttcatacaatattgtgtagttttgaatggtggtcctttgagattcttattttaattgccgggcttttacctaatcctcaacttgaaacctcggtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
184223 |
caattttcatacaatattgtgtagttttgaatggtggtcctttgagattcttattttaattgccgggcttttacctaatcctcaacttgaaacctcggtt |
184322 |
T |
|
| Q |
401 |
ctttctgtctggtgagtctaatcgatttcatttcagtttcaatttgtaatgcattgtccaaaaggtgaactatgcatttagtttataaaattgtagattg |
500 |
Q |
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| T |
184323 |
ctttctgtctggtgagtctaatcgatttcatttcagtttcaatttgtaatgcattgtccaaaaggtgaactatgcatttagtttataaaattgtagattg |
184422 |
T |
|
| Q |
501 |
cagtcaatttgatcttttaagttgaaaatcttcgatcatattagctcttttggattcatcaagttagttattagaatgttttgcagggattgatgtgatc |
600 |
Q |
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| T |
184423 |
cagtcaatttgatcttttaagttgaaaatcttcgatcatattagctcttttggattcatcaagttagttattaaaatgttttgcagggattgatgtgatc |
184522 |
T |
|
| Q |
601 |
aagaattttcgaacataataattattttgaaattttgttcatttcatatattaagttcatagtaccctactatatattatgtggcattgactaatgtgat |
700 |
Q |
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| T |
184523 |
aagaattttcaaacataataattattttgaaattttgttcatttcatatattaagttcatagtaccctactatatattatgtggcattgactaatgtgat |
184622 |
T |
|
| Q |
701 |
cgaaatttttcaactgtattgcgaatttagttcacgaaactgaaaatctttaatcatatgctaaatcttttgtgattttagtactctgtg |
790 |
Q |
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| T |
184623 |
cgaaatttttcaactgtattgcgaatttagttcacgaaactgaaaatctttaatcatatgctaaatcttttgtgattttagtactctgtg |
184712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 3e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 133 - 406
Target Start/End: Original strand, 36214571 - 36214845
Alignment:
| Q |
133 |
tctccatcatgtgaaaaaaccaagattgtgttttctactcatgctttacataacctaccagagttctgcaaatatgctattccttctggactcatgtttt |
232 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
36214571 |
tctccatcatgtcaaaaaaccaagattgtgttttctactcaagctttacataacccaccggagttctgcaaatatgctattccttttggactcatgtttt |
36214670 |
T |
|
| Q |
233 |
ggtaaattataatatctcatta-taaaacaatgctgcttcatttcattttagttttcttctactaatttcaattttcatacaatattgtgtagttttgaa |
331 |
Q |
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|||||| ||||||||||| ||| ||||| |||||||||| ||||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||| | |
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| T |
36214671 |
ggtaaactataatatctctttagtaaaataatgctgctttatttcattttaatcttcttttactaatttcaatcttcatacaatattgtgtagttttgga |
36214770 |
T |
|
| Q |
332 |
tggtggtcctttgagattcttattttaattgccgggcttttacctaatcctcaacttgaaacctcggttctttct |
406 |
Q |
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| T |
36214771 |
tggtggtcctctgagtttcttatattaattgtcgggctatgatctaatcatcaacttgaaacctcggttctttct |
36214845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 36214434 - 36214522
Alignment:
| Q |
1 |
gctctatttttgcacattcctatttgttggattctggtttttaagttgggattaggacacattggagctgctttagctatcggaatttc |
89 |
Q |
| |
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| T |
36214434 |
gctctatttttgcaaattcatatttgttggattctggtttttaagttgggattaggacacattggagctgctttagctattggaatttc |
36214522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 437 - 508
Target Start/End: Original strand, 36214847 - 36214925
Alignment:
| Q |
437 |
tttcaatttgtaatgcattgtccaaaaggtgaac--tatgcatttagt-----ttataaaattgtagattgcagtcaat |
508 |
Q |
| |
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||||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |||||| |
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| T |
36214847 |
tttcaatttataatgcattgtccaaagggtgaactatatgcatttagtccctattataaaattgtagattgccgtcaat |
36214925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 671 - 750
Target Start/End: Original strand, 36216388 - 36216467
Alignment:
| Q |
671 |
tatatattatgtggcattgactaatgtgatcgaaatttttcaactgtattgcgaatttagttcacgaaactgaaaatctt |
750 |
Q |
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| T |
36216388 |
tatatattatgtgtcatggaataatatgattgaaattattcaaatgtatggtgaatttagttcatgaaacggaaaatctt |
36216467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 31752819 - 31752670
Alignment:
| Q |
19 |
cctatttgttggattctggtttttaagttgggattaggacacattggagctgctttagctatcggaatttcttattggttgaatgtgatttggctttggg |
118 |
Q |
| |
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| T |
31752819 |
cctatttgttggtgtttggtatttaaattcggattaggacatgttggagcagcatttgccatcggtattgcttattggttgaatgtgatttggcttggaa |
31752720 |
T |
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| Q |
119 |
tttatattaagtactctccatcatgtgaaaaaaccaagattgtgttttct |
168 |
Q |
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| T |
31752719 |
tttatatgaagtattctccagcttgtgagaaaaccaagattgtgttttct |
31752670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 322 - 417
Target Start/End: Complemental strand, 31752515 - 31752420
Alignment:
| Q |
322 |
tagttttgaatggtggtcctttgagattcttattttaattgccgggcttttacctaatcctcaacttgaaacctcggttctttctgtctggtgagt |
417 |
Q |
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|||| ||||||||||||| |||||||| |||| | |||||||||||||||||||| | || || |||||||| |||||||| || |||||||| |
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| T |
31752515 |
tagtcttgaatggtggtcatttgagatacttacaatcgttgccgggcttttacctaattcgcagctcgaaacctcagttctttcagtgtggtgagt |
31752420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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