View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21072_high_20 (Length: 261)
Name: NF21072_high_20
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 53185170 - 53184978
Alignment:
| Q |
20 |
attaaaaccagccacacttaaatgtgaaacaatgttttgaacacctccaagaagtaaattatcaatagttgaaaaacaattattcagcaatcttcaagcg |
119 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||| | |||| |||||||| ||| || ||||||||| ||||| ||||||||||| | |
|
|
| T |
53185170 |
attaaaaccagtcacacttaaatatgaaacaatgttttgaacaccttgaggaagcaaattatcgataattaaaaaacaatcattcaacaatcttcaagtg |
53185071 |
T |
|
| Q |
120 |
attggtgagacctttaataaaaccaaattgtttatataactttaaacatacaagaatttgttattgaatcaaaattaaagattgcctcataag |
212 |
Q |
| |
|
|| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
53185070 |
atcggtgagaactttaataaaaccaaattttttatataactttaaacatacaagaatttgttattgaatcaaaattaaagattacctcataag |
53184978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University