View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21072_high_24 (Length: 252)
Name: NF21072_high_24
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_high_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 2927876 - 2928119
Alignment:
| Q |
1 |
ttgccactaaccagtcctcacaaaaggagcacattacgagtcaacaacataacctctagtcgccttaaacagcaaattgtatcctaagtcacttgtagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2927876 |
ttgccactaaccagtcctcacaaaaggagcacattacgagtcaacaacataacctctagtcgccttaaacagaaaattgtatcctaagtcacttgtagat |
2927975 |
T |
|
| Q |
101 |
ggttagacttctctttcttaatcaacagagttggctgtagtgagatggagagaactcgccgggttccttaaaccatggttcggatcacaacaatttagct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2927976 |
ggttagacttctctttcttaatcaacagagttggctgtagtcagatggagtgaactcgccgggttccttaaaccatggttcggatcacaacaatttagct |
2928075 |
T |
|
| Q |
201 |
actgttcgattccattcttcggccctcttttatttctctctgct |
244 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2928076 |
actattcgattccattcttcagccctcttttatttctctctgct |
2928119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University