View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21072_high_4 (Length: 650)
Name: NF21072_high_4
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 332 - 640
Target Start/End: Original strand, 8032570 - 8032878
Alignment:
| Q |
332 |
aaatgaaatatatatatttggccattttacacggatctttcattttgagacaaagaatgtcgtaacttgtaagaacttacacgtaaccttatatatattt |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8032570 |
aaatgaaatatatatatttggccattttacacggatctttcattttgagacaaagaatgtcgtaacttgtaagaacttacacgtaaccttatatattttt |
8032669 |
T |
|
| Q |
432 |
ttgtttgtttcagaaaacactataacacaggtccagtagatttgtttttcaatggaaagcctactcctgctaagggtcttcaaattatctttgatagtgg |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8032670 |
ttgtttgtttcagaaaacactataacacaggtccagtagatttgtttttcaatggaaagcctactcctgctaagggtcttcaaattatctttgatagtgg |
8032769 |
T |
|
| Q |
532 |
gagctcctacacttacttcaatcccgcagtctataccattgttgcaaatatggttagacaaaaactaagaaacaatgctatcaattttattttcttattt |
631 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8032770 |
gagctcctacacttacttcagttccccagtctataccattgttgctaatatggttagacaaaaactaagaaacaatgctatcaattttattttcttattt |
8032869 |
T |
|
| Q |
632 |
tgccctatg |
640 |
Q |
| |
|
||||||||| |
|
|
| T |
8032870 |
tgccctatg |
8032878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 8032285 - 8032567
Alignment:
| Q |
20 |
atgagcagaagttttctggtcctactcccccacattccaaaccagctgggatccttggccttggcaacggaaagacaagtattttgtctcaacttcactc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8032285 |
atgagcagaagttttctggtcctactcccccacattccaaaccagctgggatccttggccttggcaacggaaagacaagtattttgtctcaacttacctc |
8032384 |
T |
|
| Q |
120 |
tatgggctttatcgacaatgtgttaggtcactgccttagtgcagaaggaggaggatatttattccttggagataagttcattccctcatctggaattgtt |
219 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8032385 |
tattggctttatccacaatgtgttaggtcactgccttagtgcagaaggaggaggatatttattccttggagataagttcgttccctcatctggaattgtt |
8032484 |
T |
|
| Q |
220 |
tggacacctataattcaaagttcattagagtaagtgtcggactaaatgttactctctttgtccataataagtgatatattcgg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8032485 |
tggacacctataattcaaagttcattagagtaagtgtcggactaaatgttactctctttgtccataataagtgatatattcgg |
8032567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 8022271 - 8022596
Alignment:
| Q |
20 |
atgagcagaagttttctggtcctactcccccacattccaaaccagctgggatccttggccttggcaacggaaagacaagtattttgtctcaacttcactc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||| || | |||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
8022271 |
atgagcagaagttttctggtcctactcccccaccttccacaccag---gggttcttggccttggcaatggaaagataagtattttgtctcaacttcactc |
8022367 |
T |
|
| Q |
120 |
tatgggctttatcgacaatgtgttaggtcactgccttagtgcagaaggaggaggatatttattccttggagataagttcattccctcatctggaattgtt |
219 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8022368 |
tatgggctttatccacaatgtgttaggtcactgccttagtgcagaaggaggaggatatttattccttggagataagttcattccctcatctggaattttt |
8022467 |
T |
|
| Q |
220 |
tggacacctataattcaaagttcattagagtaagtgtcggactaaatgttactctctttgtccataataagtgatatattcggacattttacatggatta |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | | ||||| ||||||||| || ||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
8022468 |
tggacacctataattcaaagttcattagagtaagtattgacctaaacgttactctccttttccataataagtgatatattcggccattttacacagatta |
8022567 |
T |
|
| Q |
320 |
agaaatgtgtataaatgaaatatatatat |
348 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
8022568 |
agaaatgcgtataaatgaaatatatatat |
8022596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 382 - 640
Target Start/End: Original strand, 8022609 - 8022868
Alignment:
| Q |
382 |
caaagaatgtcgtaacttgtaagaacttacacgtaaccttatatatatttttgtttgtttcagaaaacactataacacaggtccagtagatttgtttttc |
481 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||| ||||||| | || || ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8022609 |
caaagaatgtcgtcacttataagaacttacacgtaatcttatattttttctt-tttgtttcagaaaacactatagcacaggtccagtagatttgtttttc |
8022707 |
T |
|
| Q |
482 |
aatggaaagcctactcctgctaagggtcttcaaattatctttgatagtgggagctcctacacttacttcaatcccgcagtctataccattgttgcaaata |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
8022708 |
aatggaaagcctactcctgctaagggtcttcaaattatctttgatagtgggagctcctacacttacttcagtccccgagtctataccattgttgctaata |
8022807 |
T |
|
| Q |
582 |
tggttagac--aaaaactaagaaacaatgctatcaattttattttcttattttgccctatg |
640 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
8022808 |
tggttagacaaaaaaattaagaaacaatgctatcaatttcatttttttattttgccctatg |
8022868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 10329762 - 10329606
Alignment:
| Q |
71 |
tccttggccttggcaacggaaagacaagtattttgtctcaacttcactctatgggctttatcgacaatgtgttaggtcactgccttagtgcagaaggagg |
170 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||| || ||||||||| | || | || |||||| ||||||| ||| | |||| |||||| |
|
|
| T |
10329762 |
tccttggccttggcaatggaagaacaagtattttgtcccagcttcactctctaggtctgattcgcaatgtagtaggtcattgcttaagtggtcgaggagg |
10329663 |
T |
|
| Q |
171 |
aggatatttattccttggagataagttcattccctcatctggaattgtttggacacc |
227 |
Q |
| |
|
||||| ||| || |||||||| | ||||||||||||| ||||||||||||||||| |
|
|
| T |
10329662 |
aggatttttgttttttggagatgatctcattccctcatcaggaattgtttggacacc |
10329606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 553
Target Start/End: Complemental strand, 10329445 - 10329369
Alignment:
| Q |
477 |
ttttcaatggaaagcctactcctgctaagggtcttcaaattatctttgatagtgggagctcctacacttacttcaat |
553 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| | |||| || |||||||| ||||| ||||| ||||||||| |
|
|
| T |
10329445 |
ttttcaatggaaagcctactactattaagggtcttgaccttattttcgatagtggaagctcttacacatacttcaat |
10329369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University