View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21072_high_8 (Length: 431)
Name: NF21072_high_8
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 4534954 - 4534762
Alignment:
| Q |
1 |
tgattcaaatgtcactacaaaagaaatgaatgggagctatcaataaatataaatttagatttttgataaataaaattgagcaatgaataagttgaggatc |
100 |
Q |
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| T |
4534954 |
tgattcaaatgtcactacaaaagaaatgaatggaa-ctatcaatgaatataaattcagattttttataaataaaattgagcaatgaataagttgagcatc |
4534856 |
T |
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| Q |
101 |
tgaggatggaaaggtcgagatcttgtccatcatcgacgtcattctgctggggtttccagcgagatcaataccgttattaaaagcaacctacaga |
194 |
Q |
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| T |
4534855 |
taaggatggaaaggtcgagatcttgtctgtcatcaacgtcattctgcaggagtttcctgcgagatcaatacggtgattaaaagcaacctacaga |
4534762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 284 - 403
Target Start/End: Complemental strand, 4534672 - 4534551
Alignment:
| Q |
284 |
tataatcatcttactgaccactgtttatacatcaaaaagaagaaa--gcagttcctttatttgtaagcttatgcatccaataataagatgaacattctct |
381 |
Q |
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||||||||||||| | |||||||||||| ||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4534672 |
tataatcatcttattaaccactgtttatgcatcaaaaaaaaaaaaaagcagttcctttatttgtaagcttatacatccaataataagatgaacattctct |
4534573 |
T |
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| Q |
382 |
atctcaccaaggtaatggactg |
403 |
Q |
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| T |
4534572 |
atctcaccaaggtaatgaactg |
4534551 |
T |
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