View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21072_high_9 (Length: 391)

Name: NF21072_high_9
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21072_high_9
NF21072_high_9
[»] chr4 (3 HSPs)
chr4 (18-235)||(26501007-26501224)
chr4 (321-384)||(26500858-26500921)
chr4 (321-383)||(1798568-1798630)
[»] chr8 (2 HSPs)
chr8 (321-384)||(8044919-8044982)
chr8 (329-382)||(1578165-1578218)
[»] chr5 (3 HSPs)
chr5 (324-372)||(39368215-39368263)
chr5 (329-384)||(29685225-29685280)
chr5 (321-378)||(39368335-39368392)
[»] chr1 (4 HSPs)
chr1 (332-384)||(38709454-38709506)
chr1 (329-372)||(38709336-38709379)
chr1 (188-231)||(4390906-4390949)
chr1 (329-376)||(4391101-4391148)
[»] chr3 (2 HSPs)
chr3 (321-380)||(17324764-17324822)
chr3 (323-381)||(16284485-16284543)
[»] chr7 (2 HSPs)
chr7 (321-382)||(2569699-2569760)
chr7 (324-371)||(2569578-2569625)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 26501224 - 26501007
Alignment:
Q  18 agtaggaatgtatagcacgatattgcattttaatatcaaagtagcatttgaattacttatccaaatnnnnnnnggtagcaaatattttggttacaagtgg 117  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  26501224 agtacgaatgtatagcacgatattgaattttaatatcaaagtagcatttgaattacttatccaaataaaaaaaggtagcaaatattttggttacaagtgg 26501125  T
Q  118 gaaagaaggcaaaaaataaactagagaaaacagaaagttaacgcccgacaaaagatacgcctattggttgtgttctgtcaaaggactagggtcgaagttg 217  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26501124 gaaagaaggcaaaaaataaactagagaaaacagaaagctaacgcccgacaaaagatacgcctattggttgtgttctgtcaaaggactagggtcgaagttg 26501025  T
Q  218 tttaaggtctccctcagc 235  Q
    ||||||||||||||||||    
T  26501024 tttaaggtctccctcagc 26501007  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 26500921 - 26500858
Alignment:
Q  321 caagggtatagggtcgaggctgtctagatctccctcagccttttggtggttcactttcttctca 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26500921 caagggtatagggtcgaggctgtctagatctccctcagccttttggtggttcactttcttctca 26500858  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 1798568 - 1798630
Alignment:
Q  321 caagggtatagggtcgaggctgtctagatctccctcagccttttggtggttcactttcttctc 383  Q
    ||||||| ||||||| ||||  ||||||||||||| ||  ||||||| |||||||||||||||    
T  1798568 caagggtctagggtccaggccttctagatctcccttagatttttggtagttcactttcttctc 1798630  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 8044982 - 8044919
Alignment:
Q  321 caagggtatagggtcgaggctgtctagatctccctcagccttttggtggttcactttcttctca 384  Q
    ||||||| |||||||||||||  |||||||||||||| ||||||||||||||||||||||||||    
T  8044982 caagggtctagggtcgaggcttcctagatctccctcaaccttttggtggttcactttcttctca 8044919  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 1578165 - 1578218
Alignment:
Q  329 tagggtcgaggctgtctagatctccctcagccttttggtggttcactttcttct 382  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  1578165 tagggtcgaggctggttagatctccctcagccttttggtggttcaatttcttct 1578218  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 372
Target Start/End: Original strand, 39368215 - 39368263
Alignment:
Q  324 gggtatagggtcgaggctgtctagatctccctcagccttttggtggttc 372  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  39368215 gggtctagggtcgaggctgtttagatctccctcagcctcttggtggttc 39368263  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 29685225 - 29685280
Alignment:
Q  329 tagggtcgaggctgtctagatctccctcagccttttggtggttcactttcttctca 384  Q
    ||||||||| ||||| ||||||||||| |||| ||||||||||| |||||||||||    
T  29685225 tagggtcgaagctgtttagatctcccttagccatttggtggttcgctttcttctca 29685280  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 39368335 - 39368392
Alignment:
Q  321 caagggtatagggtcgaggctgtctagatctccctcagccttttggtggttcactttc 378  Q
    ||||||| | ||||||||| | ||||||||  ||||||||||||||||||||||||||    
T  39368335 caagggtcttgggtcgaggttttctagatcctcctcagccttttggtggttcactttc 39368392  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 38709454 - 38709506
Alignment:
Q  332 ggtcgaggctgtctagatctccctcagccttttggtggttcactttcttctca 384  Q
    |||||||| | | ||||||||||||| ||||||||||||||||||||||||||    
T  38709454 ggtcgaggttttatagatctccctcaaccttttggtggttcactttcttctca 38709506  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 38709336 - 38709379
Alignment:
Q  329 tagggtcgaggctgtctagatctccctcagccttttggtggttc 372  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||    
T  38709336 tagggtcgaggctgtttagatctccctcagcctcttggtggttc 38709379  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 4390906 - 4390949
Alignment:
Q  188 tgttctgtcaaaggactagggtcgaagttgtttaaggtctccct 231  Q
    |||| ||||||  |||||||||||||||||||||||||||||||    
T  4390906 tgttatgtcaagagactagggtcgaagttgtttaaggtctccct 4390949  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 4391101 - 4391148
Alignment:
Q  329 tagggtcgaggctgtctagatctccctcagccttttggtggttcactt 376  Q
    ||||||||||||| ||||||||||||  |||||||||||| |||||||    
T  4391101 tagggtcgaggctttctagatctcccctagccttttggtgtttcactt 4391148  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 380
Target Start/End: Complemental strand, 17324822 - 17324764
Alignment:
Q  321 caagggtatagggtcgaggctgtctagatctccctcagccttttggtggttcactttctt 380  Q
    ||||||| ||||||||||||| |||||||||||||||  |||||| ||||||||||||||    
T  17324822 caagggtctagggtcgaggctatctagatctccctca-acttttgatggttcactttctt 17324764  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 16284485 - 16284543
Alignment:
Q  323 agggtatagggtcgaggctgtctagatctccctcagccttttggtggttcactttcttc 381  Q
    ||||| ||||||||||||| |  ||||||||||||||  ||||||||||||||||||||    
T  16284485 agggtctagggtcgaggctattcagatctccctcagcaatttggtggttcactttcttc 16284543  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 382
Target Start/End: Original strand, 2569699 - 2569760
Alignment:
Q  321 caagggtatagggtcgaggctgtctagatctccctcagccttttggtggttcactttcttct 382  Q
    ||||||| || |||| ||||| ||||||||||| |||| ||||||||||||| |||||||||    
T  2569699 caagggtctaaggtcaaggctatctagatctccttcagtcttttggtggttctctttcttct 2569760  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 2569578 - 2569625
Alignment:
Q  324 gggtatagggtcgaggctgtctagatctccctcagccttttggtggtt 371  Q
    |||| |||||||||| |||| ||||||||||||||||| |||||||||    
T  2569578 gggtctagggtcgagactgtttagatctccctcagcctcttggtggtt 2569625  T

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