View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21072_low_13 (Length: 346)

Name: NF21072_low_13
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21072_low_13
NF21072_low_13
[»] chr3 (2 HSPs)
chr3 (7-249)||(44463493-44463735)
chr3 (41-113)||(31708199-31708271)
[»] chr7 (2 HSPs)
chr7 (204-249)||(9428552-9428597)
chr7 (42-96)||(25156270-25156324)
[»] chr4 (2 HSPs)
chr4 (41-97)||(1023878-1023934)
chr4 (61-113)||(21691192-21691244)
[»] chr1 (3 HSPs)
chr1 (61-112)||(30557556-30557607)
chr1 (192-241)||(2269450-2269499)
chr1 (204-241)||(9566850-9566887)
[»] chr2 (2 HSPs)
chr2 (15-69)||(38237196-38237250)
chr2 (41-102)||(16518842-16518903)
[»] scaffold0087 (1 HSPs)
scaffold0087 (204-245)||(53251-53292)
[»] chr8 (4 HSPs)
chr8 (204-241)||(7598852-7598889)
chr8 (42-78)||(32033837-32033873)
chr8 (61-113)||(32927945-32927997)
chr8 (61-113)||(35495043-35495095)
[»] chr6 (2 HSPs)
chr6 (45-97)||(8856376-8856428)
chr6 (42-98)||(32888918-32888974)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 44463735 - 44463493
Alignment:
Q  7 gtgagaagaattgattttgtaaaattgattctcggtgagttgaagataaaatagtttgtgtttggatatattgatatgaaagtgagttgaactatacagt 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  44463735 gtgataagaattgattttgtaaaattgattctcggtgagttgaagataaaatagtttgtgtttggatatattgatatgaaagtgagttgagctatatagt 44463636  T
Q  107 tgtgtgtnnnnnnnnttaattttaaaatcaaaagttacaatctcaacatcaagtagaattaattatgaaggcaaaatcaaattaattttacttaagtgtt 206  Q
    |||||||        |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44463635 tgtgtgtaaaaaaaattaattttaaaatcaaaagttacaatctcaacttcaagtagaattaattatgaaggcaaaatcaaattaattttacttaagtgtt 44463536  T
Q  207 gtgttatttgaacattaaattatatgataactttttagataat 249  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  44463535 gtgttatttgaacatcaaattatatgataacttttgagataat 44463493  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 31708199 - 31708271
Alignment:
Q  41 gtgagttgaagataaaatagtttgtgtttggatatattgatatgaaagtgagttgaactatacagttgtgtgt 113  Q
    ||||||||  |||||| | ||||||||||||||| ||| || | ||||||||||||| |||| | ||||||||    
T  31708199 gtgagttgctgataaagtggtttgtgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgt 31708271  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 9428597 - 9428552
Alignment:
Q  204 gttgtgttatttgaacattaaattatatgataactttttagataat 249  Q
    ||||||||||||||||||| | |||||||||||| |||||||||||    
T  9428597 gttgtgttatttgaacatttatttatatgataacattttagataat 9428552  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 25156324 - 25156270
Alignment:
Q  42 tgagttgaagataaaatagtttgtgtttggatatattgatatgaaagtgagttga 96  Q
    |||||||||||||||||  |||||||||| ||| ||| |||| ||||||||||||    
T  25156324 tgagttgaagataaaatgatttgtgtttgaatacattcatataaaagtgagttga 25156270  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 1023878 - 1023934
Alignment:
Q  41 gtgagttgaagataaaatagtttgtgtttggatatattgatatgaaagtgagttgaa 97  Q
    ||||||||||| |||| |  ||| ||||||||||||||||| |||||||||||||||    
T  1023878 gtgagttgaaggtaaagtgatttttgtttggatatattgatgtgaaagtgagttgaa 1023934  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 21691192 - 21691244
Alignment:
Q  61 tttgtgtttggatatattgatatgaaagtgagttgaactatacagttgtgtgt 113  Q
    |||||||||||||||||| || | |||||| ||||||||||| | ||||||||    
T  21691192 tttgtgtttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgt 21691244  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 30557607 - 30557556
Alignment:
Q  61 tttgtgtttggatatattgatatgaaagtgagttgaactatacagttgtgtg 112  Q
    |||||||||||||| ||| |||| |||||||||||||||||| | |||||||    
T  30557607 tttgtgtttggatacattcatataaaagtgagttgaactataaatttgtgtg 30557556  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 2269450 - 2269499
Alignment:
Q  192 ttttacttaagtgttgtgttatttgaacattaaattatatgataactttt 241  Q
    ||||| ||||| ||||||||||||||| ||| |||||||||| |||||||    
T  2269450 ttttatttaagagttgtgttatttgaatattcaattatatgacaactttt 2269499  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 9566850 - 9566887
Alignment:
Q  204 gttgtgttatttgaacattaaattatatgataactttt 241  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  9566850 gttgtgttatttgaacattcaattatatgacaactttt 9566887  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 38237196 - 38237250
Alignment:
Q  15 aattgattttgtaaaattgattctcggtgagttgaagataaaatagtttgtgttt 69  Q
    ||||||||||||| |||||||||| | | | |||||||||||||||||| |||||    
T  38237196 aattgattttgtacaattgattctagtttaattgaagataaaatagtttatgttt 38237250  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 16518903 - 16518842
Alignment:
Q  41 gtgagttgaagataaaatagtttgtgtttggatatattgatatgaaagtgagttgaactata 102  Q
    ||||||||| | ||||||  |||||||||||||| ||| || | ||||||||||||||||||    
T  16518903 gtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactata 16518842  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 53251 - 53292
Alignment:
Q  204 gttgtgttatttgaacattaaattatatgataactttttaga 245  Q
    ||||||||||||||||||| | ||||||||||| ||||||||    
T  53251 gttgtgttatttgaacatttatttatatgataagtttttaga 53292  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 7598889 - 7598852
Alignment:
Q  204 gttgtgttatttgaacattaaattatatgataactttt 241  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  7598889 gttgtgttatttgaacattcaattatatgaaaactttt 7598852  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 32033837 - 32033873
Alignment:
Q  42 tgagttgaagataaaatagtttgtgtttggatatatt 78  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  32033837 tgagttgaaaataaaataatttgtgtttggatatatt 32033873  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 32927997 - 32927945
Alignment:
Q  61 tttgtgtttggatatattgatatgaaagtgagttgaactatacagttgtgtgt 113  Q
    |||||||||||||| ||| || | |||||||||||||||||| | ||||||||    
T  32927997 tttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgt 32927945  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 35495095 - 35495043
Alignment:
Q  61 tttgtgtttggatatattgatatgaaagtgagttgaactatacagttgtgtgt 113  Q
    |||||||||||||||||| || | ||||| |||||||||||| | ||||||||    
T  35495095 tttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgt 35495043  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 8856428 - 8856376
Alignment:
Q  45 gttgaagataaaatagtttgtgtttggatatattgatatgaaagtgagttgaa 97  Q
    ||||||| ||||||  |||||||||||||| ||| || |||||||||||||||    
T  8856428 gttgaaggtaaaatgatttgtgtttggatacattcatgtgaaagtgagttgaa 8856376  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 32888918 - 32888974
Alignment:
Q  42 tgagttgaagataaaatagtttgtgtttggatatattgatatgaaagtgagttgaac 98  Q
    |||||||||||||||||  ||| |||||| ||||||| || | ||||||||||||||    
T  32888918 tgagttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgagttgaac 32888974  T

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