View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21072_low_14 (Length: 343)
Name: NF21072_low_14
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 16466109 - 16466302
Alignment:
| Q |
1 |
aaggtgctaaagtggtggagtatggggcccacagaattaaaagaaaatagaaattaagaagtaatgaaagaactaaaaggaatgatttaaacgacgtcgt |
100 |
Q |
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| T |
16466109 |
aaggtgctaaagtgttggagtatggggcccacagaattaaaagaaaatagaaattaagaagtaatgaaagaactaaaaggaatgatttaaacgacgtcgt |
16466208 |
T |
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| Q |
101 |
tagtgatgaagttctgaatctggaaggcattggtgaagttgaaagaggtaatgtgtttgtgtttggttcnnnnnnncttctatgaaacatcatt |
194 |
Q |
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| T |
16466209 |
tagtgatgaagttctgaatctggaaggcattggtgaagttgaaagaggtaatgtgtttgtgtttggttctttttttcttctatgaaacatcatt |
16466302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 16466370 - 16466447
Alignment:
| Q |
267 |
taaaaggagttgaagagttaagttgaggaacatgaattgaggttagtttgtgatgaaagcaatggaa-caagttgatt |
343 |
Q |
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| T |
16466370 |
taaaaggagttgaagagttaagttgaggaacatgaattgaggttactttgtgatggaagcaatggaagcaagttgatt |
16466447 |
T |
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