View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21072_low_17 (Length: 292)
Name: NF21072_low_17
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 45339823 - 45339933
Alignment:
| Q |
13 |
aatataattttaaaaacattattctatcaaaatagttaaaatattattttctaa-ttgtattgtcacccgattaataattaaatactatatcatcattat |
111 |
Q |
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| T |
45339823 |
aatataattttaaaaacattattctatcaaaatagttaaaatattattttctaatttgtattgtcacccgattaataattaaatactatatcatcattat |
45339922 |
T |
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| Q |
112 |
cttaaatctta |
122 |
Q |
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| T |
45339923 |
cttaaatctta |
45339933 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 45339954 - 45340038
Alignment:
| Q |
193 |
attaccagattatagctaaagaaaaaagtaccaatccaaatgtagtagtatttcaacagattagtaac-ttttggtggtggattt |
276 |
Q |
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| T |
45339954 |
attaccagattatagctaaagaaaaaagtactaatccaaatgtagtagtatttcaacagattagtaactttttggtggtggattt |
45340038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 45340067 - 45340165
Alignment:
| Q |
152 |
tctctattagttctctccaccgaacacgtaaccacattaaaattaccagattatagctaaagaaa-aaag-taccaatccaaatgtagtagtatttcaa |
248 |
Q |
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|||| |||||||||||| || |||||| |||| |||| ||| | | |||||||||||||||||| |||| ||| |||||||| ||||||||||||||| |
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| T |
45340067 |
tctccattagttctctctactgaacacataactacatctaaaatcctagattatagctaaagaaagaaagttactaatccaaacgtagtagtatttcaa |
45340165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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