View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21072_low_18 (Length: 285)
Name: NF21072_low_18
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 33606123 - 33605864
Alignment:
| Q |
9 |
gagatgaagaagaacttggaaaggaaaacaacaagagtgctgcatcatctaaggggaaaatcacattgagtgttactcaaactaagcctgagactggtga |
108 |
Q |
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| T |
33606123 |
gagatgaagaagaacttggaaaggaaaacaacaagagtgctgcatcatctaaggggaaaatcacattgagtgttactcaaactaagcctgagactggtga |
33606024 |
T |
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| Q |
109 |
agttattggtgtgtttgagagtattcagccgtctgacactgatttgggtgctaaagcaccaaaggatgttaaaatccaaggtgtttggtatgctcagctt |
208 |
Q |
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| T |
33606023 |
agttattggtgtgtttgagagtattcagccgtctgacactgatttgggtgctaaagcaccaaaggatgttaaaatccaaggtgtttggtatgctcagctt |
33605924 |
T |
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| Q |
209 |
gagtcatagatagctatagctagcttctttctcatgctttattctgttgtaaacttcaag |
268 |
Q |
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| T |
33605923 |
gagtcatagatagctatagctagcttctttctcatgctttattctgttgtaaacttcaag |
33605864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 6963189 - 6963396
Alignment:
| Q |
11 |
gatgaagaagaacttggaaaggaaaacaacaagagtgctgcatcatctaaggggaaaatcacattgagtgttactcaaactaagcctgagactggtgaag |
110 |
Q |
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| T |
6963189 |
gatgaggaagaacttggtaaggaaaataacaagagtgctgcatcatctaaagggaaaattacattgagtgtaactcagagtaagcctgaaactggtgagg |
6963288 |
T |
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| Q |
111 |
ttattggtgtgtttgagagtattcagccgtctgacactgatttgggtgctaaagcaccaaaggatgttaaaatccaaggtgtttggtatgctcagcttga |
210 |
Q |
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| T |
6963289 |
ttattggtgtgtttgaaagtattcagccttctgatactgatttaggtgctaaagctcctaaggatgttaagattcaaggtgtttggtatgctcagcttga |
6963388 |
T |
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| Q |
211 |
gtcataga |
218 |
Q |
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|||||||| |
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| T |
6963389 |
gtcataga |
6963396 |
T |
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