View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21072_low_26 (Length: 251)
Name: NF21072_low_26
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 49521783 - 49522023
Alignment:
| Q |
1 |
tttctcctagggtgatactactttctgttgtcttgtttgggtccctaatcaaggttatttctgcatgaacagaccaaccagttatgtaaataaagacttt |
100 |
Q |
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| T |
49521783 |
tttctcctagggtgatactactttctgttgtcttgtttgggtccctaatcaaggttatttctgtatgaacagaccaaccagttatgtaaataaagacttt |
49521882 |
T |
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| Q |
101 |
agcattcataatggcattgtaaatatcttcccaacatcttccaggtacataatattttgttccagatattggaatccacggatgaacactctcagggacg |
200 |
Q |
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| T |
49521883 |
agcattcataatggcattgtaaatatcttcccaacatcttccaggtacataatattttgttccagatattggaatccacggatgaacactctcagggacg |
49521982 |
T |
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| Q |
201 |
tgagcgtcttggtataaagtaacactacaaccttgtctctg |
241 |
Q |
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| T |
49521983 |
tgagcgtcttggtataaagtaacactacaaccttgtctctg |
49522023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 49510864 - 49510989
Alignment:
| Q |
26 |
tgttgtcttgtttgggtccctaatcaaggttatttctgcatgaacagaccaaccagttatgtaaataaagactttagcattcataatggcattgtaaata |
125 |
Q |
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| T |
49510864 |
tgttgactcgtttggatctctaatcaaggttatttccgtgtaaacagaccaaccagttatgcaaataaaatgcttagcatcattaattgcattgcaagta |
49510963 |
T |
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| Q |
126 |
tcttcccaacatcttccaggtacata |
151 |
Q |
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| T |
49510964 |
tcttcccaacattttcccggcacata |
49510989 |
T |
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