View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21072_low_3 (Length: 692)

Name: NF21072_low_3
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21072_low_3
NF21072_low_3
[»] chr1 (4 HSPs)
chr1 (16-267)||(51783966-51784217)
chr1 (294-665)||(51783494-51783884)
chr1 (374-685)||(18901705-18902017)
chr1 (566-678)||(18153328-18153441)
[»] chr8 (4 HSPs)
chr8 (395-677)||(3897323-3897608)
chr8 (564-685)||(44668814-44668934)
chr8 (577-661)||(5537131-5537215)
chr8 (564-651)||(6818491-6818578)
[»] chr3 (4 HSPs)
chr3 (504-685)||(19932610-19932786)
chr3 (444-678)||(11034944-11035174)
chr3 (569-685)||(1311410-1311526)
chr3 (566-676)||(3224669-3224778)
[»] chr7 (13 HSPs)
chr7 (564-685)||(48187381-48187502)
chr7 (565-685)||(21268227-21268347)
chr7 (496-685)||(16421520-16421702)
chr7 (565-681)||(12528740-12528857)
chr7 (565-678)||(36017878-36017992)
chr7 (566-678)||(11283409-11283522)
chr7 (566-677)||(28384009-28384116)
chr7 (566-635)||(16483973-16484042)
chr7 (577-678)||(28392895-28392992)
chr7 (489-532)||(48187529-48187572)
chr7 (489-525)||(16931632-16931668)
chr7 (489-525)||(16937015-16937051)
chr7 (489-525)||(16955553-16955589)
[»] chr6 (3 HSPs)
chr6 (566-685)||(24540576-24540695)
chr6 (565-685)||(3509769-3509887)
chr6 (597-678)||(15277846-15277927)
[»] chr4 (3 HSPs)
chr4 (566-685)||(15418853-15418972)
chr4 (566-685)||(15425870-15425989)
chr4 (564-678)||(28654458-28654573)
[»] scaffold0003 (1 HSPs)
scaffold0003 (496-685)||(10232-10414)
[»] chr5 (1 HSPs)
chr5 (564-643)||(32870275-32870354)
[»] scaffold0655 (1 HSPs)
scaffold0655 (566-646)||(7491-7573)
[»] chr2 (2 HSPs)
chr2 (564-609)||(29963185-29963230)
chr2 (489-527)||(2038866-2038904)
[»] scaffold0172 (1 HSPs)
scaffold0172 (564-634)||(34716-34786)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 51784217 - 51783966
Alignment:
Q  16 aatattttcagaaagcaataaactagaattagagtacaatcttttgttcatttttaataaatggtccaccttggtttacatcgtaaaggctaacacatga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51784217 aatattttcagaaagcaataaactagaattagagtacaatcttttgttcatttttaataaatggtctaccttggtttacatcgtaaaggctaacacatga 51784118  T
Q  116 ttctaaatctaaactcttgtacagtggaaattgggtgacaatagttcacaactttataggctatttggggtcatttgagaattagaggttccttatagga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51784117 ttctaaatctaaactcttgtacagtggaaattgggtgacaatagttcacaactttataggctatttggggtcatttgagaattagaggttccttatagga 51784018  T
Q  216 aaaataaataaatattttgaaacagccaaaataatgtttgtgatttaagggt 267  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51784017 aaaataaataaatcttttgaaacagccaaaataatgtttgtgatttaagggt 51783966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 294 - 665
Target Start/End: Complemental strand, 51783884 - 51783494
Alignment:
Q  294 cataaaatttagcaaatttcgttcattttcttttgctggcagcaacatacattgatttctcaaaagactatcatcttgtagacatcattggaatatgaag 393  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51783884 cataaaatttagcgaatttcgttcattttcttttgctggcagcaacatacattgatttctcaaaagactatcatcttgtagacatcattggaatatgaag 51783785  T
Q  394 tttaaatgttgagtgaaatactttgtgtta------------------agaaccctcggccaaaccca------ttgcataggaataatgatggttagta 469  Q
    ||||||||||||||||||||||||||||||                  ||||||||| |||||||||       ||||||||||||||||||||||||||    
T  51783784 tttaaatgttgagtgaaatactttgtgttagtgaaatactttgtgttaagaaccctccgccaaacccccaatacttgcataggaataatgatggttagta 51783685  T
Q  470 gttactctaagttagtgtttatttaattgtgaaggtatagaggtagtggaacaaagacggttgtatggaaactgtaagagctattattgcaaattaaagg 569  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||| ||||||     |||||    
T  51783684 gttactctaagttagtgtttatttaattgtgaaggtatagagatagtggaacaaagacggttgtatgagaactgtaagagctactattgc-----aaagg 51783590  T
Q  570 taagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctat 665  Q
    ||| || ||||||||||| ||||| |||||| ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||||    
T  51783589 taaaggcatcactccacgtgcttctgtacgtatatgtgtgaatatatttatgttataatgattattatagtgttgttgttttgaagtaaatgctat 51783494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 374 - 685
Target Start/End: Original strand, 18901705 - 18902017
Alignment:
Q  374 gacatcattggaatatgaagtttaaatgttgagtgaaatactttgtgttaagaaccctcggccaaaccca------ttgcataggaataatgatggttag 467  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  18901705 gacataattggaatatgaagtttaaatgttgagtgaaatactttgtgttaagaaccctcggccaaacccccaatacttgcataggaataatgatggttag 18901804  T
Q  468 tagttactctaagttagtgtttatttaattgtgaaggtatagaggtagtggaacaaagacggttgtatggaaactgtaagagctattattgcaaattaaa 567  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || | ||||     |||    
T  18901805 tagttactataagttagtgtttatttaattgtgaaggtatagaggtagtggaacaaagacgggtgtatggaaacggtaagagttactgttgc-----aaa 18901899  T
Q  568 ggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctatgt 667  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  18901900 ggtaagggtatcattccacgcgcttccgtacgtgtatttgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatgatatgt 18901999  T
Q  668 gctatatattgatgatgt 685  Q
    ||||||||||| ||||||    
T  18902000 gctatatattggtgatgt 18902017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 566 - 678
Target Start/End: Original strand, 18153328 - 18153441
Alignment:
Q  566 aaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatg-cta 664  Q
    |||||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||  |||| ||||||||| || |||||||||||| ||||||  ||    
T  18153328 aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtggtgataattatcataatggtgttgttttgaaatgaatgatta 18153427  T
Q  665 tgtgctatatattg 678  Q
    |||| |||||||||    
T  18153428 tgtgttatatattg 18153441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 395 - 677
Target Start/End: Complemental strand, 3897608 - 3897323
Alignment:
Q  395 ttaaatgttgagtgaaatactttgtgttaagaaccctcggccaaaccca-----ttgcataggaataatgatggttagtagttactctaagttagtgttt 489  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||      ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  3897608 ttaaatgttgagtgaaatactttgtgttaagaaccttcggccaaaccccaaactttgcataggaagaatgatggttagtagttacactaagttagtgttt 3897509  T
Q  490 atttaattgtgaaggtatagaggtagtggaacaaagacggttgtatggaaactgtaagagctattattgcaaattaaaggtaagggtatcactccacgcg 589  Q
    |||||||||||||||||| || || ||||||||||||||||||| |||||||| ||||||||| |||||     |||||||||||||||||||||||| |    
T  3897508 atttaattgtgaaggtattgatgttgtggaacaaagacggttgtgtggaaactttaagagctactattg-----taaaggtaagggtatcactccacgtg 3897414  T
Q  590 cttccgtacgtgtatgtgtgaatatat--ttgtgttatgatgattatcatagtgttgttgttttgaagtgaatg-ctatgtgctatatatt 677  Q
     |||||||||||||| |||  ||||||  ||||||| |||| |||||  | ||| |||||||||||| |||||| ||||||| || |||||    
T  3897413 tttccgtacgtgtatatgtatatatataattgtgttgtgataattattttggtggtgttgttttgaaatgaatgactatgtgttacatatt 3897323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 564 - 685
Target Start/End: Original strand, 44668814 - 44668934
Alignment:
Q  564 taaaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgct 663  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |    
T  44668814 taaaggtaagggcatcactctacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttg-tttgaagtgaatgtt 44668912  T
Q  664 atgtgctatatattgatgatgt 685  Q
    ||||||||||||||| ||||||    
T  44668913 atgtgctatatattggtgatgt 44668934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 577 - 661
Target Start/End: Complemental strand, 5537215 - 5537131
Alignment:
Q  577 atcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatg 661  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||  |||| ||||||||| || |||||||||||| ||||||    
T  5537215 atcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtagtgataattatcataatggtgttgttttgaaatgaatg 5537131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 564 - 651
Target Start/End: Original strand, 6818491 - 6818578
Alignment:
Q  564 taaaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgtttt 651  Q
    |||||||||||| ||||||||||||||||  |||||||||| | || |||||||||| || |||| |||||||||||| |||||||||    
T  6818491 taaaggtaagggcatcactccacgcgcttatgtacgtgtatatttgtatatatttgtattgtgataattatcatagtggtgttgtttt 6818578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 5e-67; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 504 - 685
Target Start/End: Original strand, 19932610 - 19932786
Alignment:
Q  504 gtatagaggtagtggaacaaagacggttgtatggaaactgtaagagctattattgcaaattaaaggtaagggtatcactccacgcgcttccgtacgtgta 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||     |||||||||||| |||||||||||||||||||||||||||    
T  19932610 gtatagaggtagtggaacaaagacggttgtatggaaactgtaagagctactattg-----taaaggtaagggcatcactccacgcgcttccgtacgtgta 19932704  T
Q  604 tgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctatgtgctatatattgatgatgt 685  Q
    | | |||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19932705 tttatgaatatatttgtgtcgtgatgattattatagtgttgttgttttgaagtgaatgctatgtgctatatattgctgatgt 19932786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 444 - 678
Target Start/End: Complemental strand, 11035174 - 11034944
Alignment:
Q  444 ttgcataggaataatgatggttagtagttactctaagttagtgtttatttaattgtgaaggtatagaggtagtggaacaaagacggttgtatggaaactg 543  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || | ||||||||||||||||  |||  ||||||||     
T  11035174 ttgcataggaatagtgatggttagtagttacactaagttagtgtttatttaattgtgaaggtgtaaatgtagtggaacaaagacctttgggtggaaactt 11035075  T
Q  544 taagagctattattgcaaattaaaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgtt 643  Q
    |||||| || |||||       |||||||||| |||||| |||||| |||||||| ||||| |||| ||||| ||||||| |||| ||||||||| || |    
T  11035074 taagagttactattg-----agaaggtaagggcatcacttcacgcgtttccgtacatgtatatgtgtatataattgtgttgtgataattatcataatgat 11034980  T
Q  644 gttgttttgaagtgaatg-ctatgtgctatatattg 678  Q
    ||||||||||| ||||||  |||||| |||||||||    
T  11034979 gttgttttgaaatgaatgattatgtgttatatattg 11034944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 569 - 685
Target Start/End: Original strand, 1311410 - 1311526
Alignment:
Q  569 gtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctatgtg 668  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  1311410 gtaagagtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatactatgtg 1311509  T
Q  669 ctatatattgatgatgt 685  Q
     ||||||||| ||||||    
T  1311510 ttatatattggtgatgt 1311526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 566 - 676
Target Start/End: Original strand, 3224669 - 3224778
Alignment:
Q  566 aaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctat 665  Q
    |||||||||| ||||||||||||| |||||||| ||||| ||   ||||||||||||| |||| |||| |||| || ||||| |||||| |||||| |||    
T  3224669 aaggtaagggcatcactccacgcgtttccgtacatgtatatgattatatatttgtgttgtgataattagcatattgctgttg-tttgaaatgaatgttat 3224767  T
Q  666 gtgctatatat 676  Q
    |||||||||||    
T  3224768 gtgctatatat 3224778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 564 - 685
Target Start/End: Complemental strand, 48187502 - 48187381
Alignment:
Q  564 taaaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgct 663  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48187502 taaaggtaagggcatcactccacgcgcttccatacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct 48187403  T
Q  664 atgtgctatatattgatgatgt 685  Q
    ||||||||||||||| ||||||    
T  48187402 atgtgctatatattggtgatgt 48187381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 565 - 685
Target Start/End: Complemental strand, 21268347 - 21268227
Alignment:
Q  565 aaaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgcta 664  Q
    ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| ||| |||||    
T  21268347 aaaggtaagggcatcacttcacgcgcttccgtacgtgtatgtgtgtatatatttgtgttgtgatgattattatagtgttgttgttttgaaatgagtgcta 21268248  T
Q  665 tgtgctatatattgatgatgt 685  Q
    |||||||||||||| ||||||    
T  21268247 tgtgctatatattggtgatgt 21268227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 496 - 685
Target Start/End: Original strand, 16421520 - 16421702
Alignment:
Q  496 ttgtgaaggtatagaggtagtggaacaaagacggttgtatggaaactgtaagagctattattgcaaattaaaggtaagggtatcactccacgcgcttccg 595  Q
    ||||||||||||||| |||||||||||||||  |||  |||| || | |||||| | || |||||||     |||||||| |||||||||||| | ||||    
T  16421520 ttgtgaaggtatagacgtagtggaacaaagaatgtttcatgggaattttaagagttcttgttgcaaa-----ggtaagggcatcactccacgcacgtccg 16421614  T
Q  596 tacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctatgtgctatatattgatgatgt 685  Q
    ||||||||||||||| |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  16421615 tacgtgtatgtgtgactat--ttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctatgtgttatatattggtgatgt 16421702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 565 - 681
Target Start/End: Complemental strand, 12528857 - 12528740
Alignment:
Q  565 aaaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatg-ct 663  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||| ||| ||||| || |||||||||||| ||||||  |    
T  12528857 aaaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgttatgataattgtcataatggtgttgttttgaaatgaatgatt 12528758  T
Q  664 atgtgctatatattgatg 681  Q
    ||||| |||||| |||||    
T  12528757 atgtgttatataatgatg 12528740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 565 - 678
Target Start/End: Original strand, 36017878 - 36017992
Alignment:
Q  565 aaaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatg-ct 663  Q
    ||||||||||| ||||||||||| |||||||||||||||| |||| ||||| ||||||| |||| ||||||||| || |||||||||||| ||||||  |    
T  36017878 aaaggtaagggcatcactccacgtgcttccgtacgtgtatatgtgtatataattgtgttgtgataattatcatattggtgttgttttgaaatgaatgatt 36017977  T
Q  664 atgtgctatatattg 678  Q
    ||||| |||||||||    
T  36017978 atgtgttatatattg 36017992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 566 - 678
Target Start/End: Complemental strand, 11283522 - 11283409
Alignment:
Q  566 aaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatg-cta 664  Q
    |||||||||| |||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||||||||| || |||||||| ||| ||||||  ||    
T  11283522 aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtgtataattgtgttgtgataattatcataatgatgttgtttagaaatgaatgatta 11283423  T
Q  665 tgtgctatatattg 678  Q
    |||| |||||||||    
T  11283422 tgtgttatatattg 11283409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 566 - 677
Target Start/End: Original strand, 28384009 - 28384116
Alignment:
Q  566 aaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctat 665  Q
    |||||||| ||||||||||||||  ||| ||||||||||||    |||||| |||||| |||| ||||||||| ||||||||||||||| |||||| |||    
T  28384009 aaggtaagagtatcactccacgcatttcggtacgtgtatgt----atatatctgtgttttgataattatcataatgttgttgttttgaaatgaatgttat 28384104  T
Q  666 gtgctatatatt 677  Q
    ||| ||||||||    
T  28384105 gtgttatatatt 28384116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 566 - 635
Target Start/End: Original strand, 16483973 - 16484042
Alignment:
Q  566 aaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatc 635  Q
    |||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||| ||||||    
T  16483973 aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatatatttgtgttgtgataattatc 16484042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 678
Target Start/End: Original strand, 28392895 - 28392992
Alignment:
Q  577 atcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctatgtgctatatat 676  Q
    ||||||||||||| ||| ||  ||||||||    |||||||||| || |||| ||||| ||| ||||||||||||||| |||||| |||||| |||||||    
T  28392895 atcactccacgcgtttcggtgtgtgtatgt----atatatttgttttttgataattattataatgttgttgttttgaaatgaatgttatgtgttatatat 28392990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 532
Target Start/End: Complemental strand, 48187572 - 48187529
Alignment:
Q  489 tatttaattgtgaaggtatagaggtagtggaacaaagacggttg 532  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  48187572 tatttaattgtgaaggtatagaggtagtagaacaaagaccgttg 48187529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 525
Target Start/End: Complemental strand, 16931668 - 16931632
Alignment:
Q  489 tatttaattgtgaaggtatagaggtagtggaacaaag 525  Q
    ||||||| |||||||||||||||||||||||||||||    
T  16931668 tatttaaatgtgaaggtatagaggtagtggaacaaag 16931632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 525
Target Start/End: Complemental strand, 16937051 - 16937015
Alignment:
Q  489 tatttaattgtgaaggtatagaggtagtggaacaaag 525  Q
    ||||||| |||||||||||||||||||||||||||||    
T  16937051 tatttaaatgtgaaggtatagaggtagtggaacaaag 16937015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 489 - 525
Target Start/End: Complemental strand, 16955589 - 16955553
Alignment:
Q  489 tatttaattgtgaaggtatagaggtagtggaacaaag 525  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  16955589 tatttaaatgtgaaggtatagaggtaatggaacaaag 16955553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 566 - 685
Target Start/End: Original strand, 24540576 - 24540695
Alignment:
Q  566 aaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctat 665  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  24540576 aaggtaagggtatcactccacacgcttccgtacgtttatgtgtgaatatatttgtgttgtgatgattatcatattgttgttgttttgaagtgaatgctat 24540675  T
Q  666 gtgctatatattgatgatgt 685  Q
    ||  ||||||||| ||||||    
T  24540676 gttttatatattggtgatgt 24540695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 565 - 685
Target Start/End: Original strand, 3509769 - 3509887
Alignment:
Q  565 aaaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgcta 664  Q
    ||||||||||| |||| |||| ||||||||||| ||||||||||||||||  ||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  3509769 aaaggtaagggcatcattccatgcgcttccgtatgtgtatgtgtgaatat--ttgtgttgtgatggttaccatagtgttgttgttttgaagtgaatgcta 3509866  T
Q  665 tgtgctatatattgatgatgt 685  Q
    |||||||||||||| ||||||    
T  3509867 tgtgctatatattggtgatgt 3509887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 597 - 678
Target Start/End: Original strand, 15277846 - 15277927
Alignment:
Q  597 acgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctatgtgctatatattg 678  Q
    ||||||||||||| ||||||||||||| |||| |||| |||| | ||||||||| ||| ||||||||||||| |||||||||    
T  15277846 acgtgtatgtgtgtatatatttgtgttttgataattaacataatattgttgtttggaaatgaatgctatgtgttatatattg 15277927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 566 - 685
Target Start/End: Original strand, 15418853 - 15418972
Alignment:
Q  566 aaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctat 665  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15418853 aaggtaagggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat 15418952  T
Q  666 gtgctatatattgatgatgt 685  Q
    ||  ||||||||| ||||||    
T  15418953 gttttatatattggtgatgt 15418972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 566 - 685
Target Start/End: Original strand, 15425870 - 15425989
Alignment:
Q  566 aaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctat 665  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  15425870 aaggtaagggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtattgttgttttgaagtgaatgctat 15425969  T
Q  666 gtgctatatattgatgatgt 685  Q
    || |||||||||| ||||||    
T  15425970 gttctatatattggtgatgt 15425989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 564 - 678
Target Start/End: Complemental strand, 28654573 - 28654458
Alignment:
Q  564 taaaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatg-c 662  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||| ||||| || |||| |||| ||||||||| ||  ||||||||||| ||||||      
T  28654573 taaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtgtatataattctgttgtgataattatcataatggggttgttttgaaatgaatgat 28654474  T
Q  663 tatgtgctatatattg 678  Q
    |||||| |||||||||    
T  28654473 tatgtgttatatattg 28654458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 496 - 685
Target Start/End: Original strand, 10232 - 10414
Alignment:
Q  496 ttgtgaaggtatagaggtagtggaacaaagacggttgtatggaaactgtaagagctattattgcaaattaaaggtaagggtatcactccacgcgcttccg 595  Q
    ||||||||||||||| |||||||||||||||  |||  |||| || | |||||| | || |||||||     |||||||| |||||||||||| | ||||    
T  10232 ttgtgaaggtatagacgtagtggaacaaagaatgtttcatgggaattttaagagttcttgttgcaaa-----ggtaagggcatcactccacgcacgtccg 10326  T
Q  596 tacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgttgttgttttgaagtgaatgctatgtgctatatattgatgatgt 685  Q
    ||||||||||||||| |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  10327 tacgtgtatgtgtgactat--ttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctatgtgttatatattggtgatgt 10414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 564 - 643
Target Start/End: Complemental strand, 32870354 - 32870275
Alignment:
Q  564 taaaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattatcatagtgtt 643  Q
    ||||||||||||| || ||||||| |||||||||||| ||| |||| |||||||| |||| |||||||||||||||||||    
T  32870354 taaaggtaagggtttcgctccacgtgcttccgtacgtatatatgtgtatatatttatgttgtgatgattatcatagtgtt 32870275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 566 - 646
Target Start/End: Original strand, 7491 - 7573
Alignment:
Q  566 aaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaata--tatttgtgttatgatgattatcatagtgttgtt 646  Q
    |||||||||| |||||||||||||||||||||| ||||||| |  |||  |||||||||| |||| |||||||| ||||||||    
T  7491 aaggtaagggcatcactccacgcgcttccgtacatgtatgtttatatatctatttgtgttgtgataattatcatggtgttgtt 7573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 564 - 609
Target Start/End: Complemental strand, 29963230 - 29963185
Alignment:
Q  564 taaaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtg 609  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  29963230 taaaggtaaggatatcactccacgcgcttccgtacgtgtgtgtgtg 29963185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 527
Target Start/End: Original strand, 2038866 - 2038904
Alignment:
Q  489 tatttaattgtgaaggtatagaggtagtggaacaaagac 527  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  2038866 tatttaattgtgaaggtatggatgtagtggaacaaagac 2038904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 564 - 634
Target Start/End: Complemental strand, 34786 - 34716
Alignment:
Q  564 taaaggtaagggtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttatgatgattat 634  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||  |||||  |||||| |||| |||||    
T  34786 taaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtatatataactgtgttgtgataattat 34716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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