View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21072_low_35 (Length: 204)
Name: NF21072_low_35
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 23252812 - 23252987
Alignment:
| Q |
12 |
aagaaaattaatgtaaaggattctagttggattgcttgggccataaaccctaattcgattggcatgataggatcgcaagctctaatcggtcatcgaaact |
111 |
Q |
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| T |
23252812 |
aagaaaattaatgtaaaggattctagttggattgcttgggccataaaccctaattcgaatggcatgataggatcgcaagctctaatcggtcatcgaaact |
23252911 |
T |
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| Q |
112 |
ttgatggaagtttcaaagtctatacttcaccaataacaagttaccaaactatgttacaagagggtaacattagtct |
187 |
Q |
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| T |
23252912 |
ttgatggaagtttcaaagtctatacttcacaaataacaagttaccaaactatgttacaagagggtaacattagtct |
23252987 |
T |
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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 39324651 - 39324489
Alignment:
| Q |
12 |
aagaaaattaatgtaaaggattctagttggattgcttgggccataaaccctaattcgattggcatgataggatcgcaagctctaatcggtcatcgaaact |
111 |
Q |
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||||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||| | |||||| ||||||| ||||| | |||||| ||| ||| | |
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| T |
39324651 |
aagaaaaataacgtaaaagattctagttggattgcttgggccataaaccctacttcaaagggcatgttaggatcacaagccttgatcggttatcaaaatt |
39324552 |
T |
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| Q |
112 |
ttgatggaagtttcaaagtctatacttcaccaataacaagttaccaaactatgttacaagagg |
174 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
39324551 |
ttgatggaagtttcaaagcttatacttcgtcaataacaagttatcaaactatgttacaagagg |
39324489 |
T |
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