View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21072_low_5 (Length: 509)
Name: NF21072_low_5
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 28902684 - 28902192
Alignment:
| Q |
1 |
ttcatttgcaggagaaggtagatatgagagatccagatacaatagaaagttacttttttgaatattatcaagttatcaagaaaaaagaagggctgaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28902684 |
ttcatttgcaggagaaggtagatatgagagatccagatacaatagaaagttacttttttgaatattatcaagttatcaagaaaaaagaagggctgaattc |
28902585 |
T |
|
| Q |
101 |
tcaggatgtttatactgcccgtgacatcattaaaaatggaaaaaacaaatatgaagtaggtgagggggaagacgatactggtgactctgatgcgagtgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28902584 |
tcaggatgtttatactgcccgtgacatcattaaaaatggaaaaaacaaatatgaagtaggtgagggggaagacgatactggtgaatctgatgcgagtgac |
28902485 |
T |
|
| Q |
201 |
tttataggttctgattgtgatgacttggttggcacttcaagagttaaatcggtgaggagaaagaagtgcagtgaaaagctgaagtcaataataaaaggga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28902484 |
tttataggttctgattgtgatgacttggttggcacgtcaagagttaaatcggtgaggagaaagaagtgcagtgaaaagctgaagtcaataataaaaggga |
28902385 |
T |
|
| Q |
301 |
aagtggtgaaacatacgaaaaaggattttgttggatggggttcaagaagtctcatagattttcttaaaagtattggtagagacacgactgaagcgttgtc |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28902384 |
aagtagtgaaacatacgaaaaaggattttgttggatggggttcaagaagtctcatagattttcttaaaagtattggtagagacacgactgaagcgttgtc |
28902285 |
T |
|
| Q |
401 |
tgaacttgatgttgcttggatcatcatccagtactgccacacaaaccagctttttgaccccaagaaaaagaagatcgtaatttgtgatgcaaa |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28902284 |
tgaacttgatgttgcttggatcatcatccagtactgccacacaaaccagctttttgaccccaagaaaaagaagatcgtaatttgtgatgcaaa |
28902192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 28926334 - 28925832
Alignment:
| Q |
1 |
ttcatttgcaggagaaggtagatatgagagatccagatacaatagaaagttacttttttgaatattatcaagttatcaagaaaaaagaagggctgaattc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
28926334 |
ttcatttgcaggagaagatagatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatcaaagaaagagaagggctgaattc |
28926235 |
T |
|
| Q |
101 |
tcaggatgtttatactgcccgtgacatcattaaaaatggaaaaaacaaa---------------tatgaagtaggtgagggggaagacgatactggtgac |
185 |
Q |
| |
|
||||||| |||| | ||||||||||||| |||||||||| |||||||| |||||| |||||||||||||||| ||||||||||| |
|
|
| T |
28926234 |
tcaggatatttacattgcccgtgacatcgttaaaaatgggaaaaacaagcgtgacttggatccgtatgaaataggtgagggggaagatgatactggtgat |
28926135 |
T |
|
| Q |
186 |
tctgatgcgagtgactttataggttctgattgtgatgacttggttggcacttcaagagttaaatcggtgaggagaaagaagtgcagtgaaaagctgaagt |
285 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||| ||||| | || || |||||||||||||| |||| |||||||||||| | ||||||| || | |
|
|
| T |
28926134 |
tctgatgtgagcaactttataggatctgattgtgacgacttcgatgaaacgtcaagagttaaatcagtgaagagaaagaagtgtacgaaaaagctcaaat |
28926035 |
T |
|
| Q |
286 |
caataataaaagggaaagtggtgaaacatacgaaaaaggattttgttggatggggttcaagaagtctcatagattttcttaaaagtattggtagagacac |
385 |
Q |
| |
|
| ||||||||||||||| | |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28926034 |
c---aataaaagggaaagtagcgaaagataagaaaaaggattttgtaggatggggttcaagaagtctcatagattttcttaaaaatattggtagagacac |
28925938 |
T |
|
| Q |
386 |
gactgaagcgttgtctgaacttgatgttgcttggatcatcatccagtactgccacacaaaccagctttttgaccccaagaaaaagaagatcgtaatttgt |
485 |
Q |
| |
|
||| |||| || || ||| |||| ||||||| |||| ||| | |||||||||| | |||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
28925937 |
gaccaaagctttttccgaaattgaagttgcttcgatcgtcaatgattactgccacaaacaccagctttttgaccccaagaaaaagaaga---taatctgt |
28925841 |
T |
|
| Q |
486 |
gatgcaaat |
494 |
Q |
| |
|
||||||||| |
|
|
| T |
28925840 |
gatgcaaat |
28925832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 28917099 - 28916603
Alignment:
| Q |
1 |
ttcatttgcaggagaaggtagatatgagagatccagatacaatagaaagttacttttttgaatattatcaagttatcaagaaaaaagaagggctgaattc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
28917099 |
ttcatttgcaggagaagatagatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatcaaaaaaaaggaagggtggaattc |
28917000 |
T |
|
| Q |
101 |
tcaggatgtttatactgcccgtgacatcattaaaaatggaaaaaacaa---------------atatgaagtaggtgagggggaagacgatactggtgac |
185 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| | ||| |||||| ||||||||||||| ||||| ||||| |
|
|
| T |
28916999 |
tcaggatgtttatattgcccgtgacatcattaaaaatggaaacatcaagcgtgacttggaaccgtatgaaagaggtgagggggaa---gataccggtgaa |
28916903 |
T |
|
| Q |
186 |
tctgatgcgagtgactttataggttctgattgtgatgacttggttggcacttcaagagttaaatcggtgaggagaaagaagtgcagtgaaaagctgaagt |
285 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||| | || | |||||||||| | ||| | || | |
|
|
| T |
28916902 |
tctgatgcaagtgactttataggttctgattctgacgacttggttggcacgtcaagagttaaaccagtaaagagaaagaag------aataaggttaaat |
28916809 |
T |
|
| Q |
286 |
caataataaaagggaaagtggtgaaacatacgaaaaaggattttgttggatggggttcaagaagtctcatagattttcttaaaagtattggtagagacac |
385 |
Q |
| |
|
| |||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
28916808 |
c---aataaatgggaaagtaacaaaagataagaaaaaggattttgttggatggggttcaagaagtctcatagattttcttaaaaatattggtgaagacac |
28916712 |
T |
|
| Q |
386 |
gactgaagcgttgtctgaacttgatgttgcttggatcatcatccagtactgccacacaaaccagctttttgaccccaagaaaaagaagatcgtaatttgt |
485 |
Q |
| |
|
||| |||| || || ||| |||||||||||| ||||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
28916711 |
gaccaaagctttttccgaaattgatgttgcttcgatcatccataagtactgccaaaaaaaccagctttttgaccccaagaaaaagaagatggtaatctgc |
28916612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 28892739 - 28892237
Alignment:
| Q |
1 |
ttcatttgcaggagaaggtagatatgagagatccagatacaatagaaagttacttttttgaatattatcaagttatcaagaaaaaagaagggctgaattc |
100 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28892739 |
ttcatttgcaggaaaaggtcgatatgaaagatccagatacacaagaaagttacttttttgattattatcaaattatcaagaaaaaagaagggctgaattc |
28892640 |
T |
|
| Q |
101 |
tcaggatgtttatactgcccgtgacatcattaaaaatggaaaaaacaa---------atatgaagtaggtgagggggaagacgatactggtgactctgat |
191 |
Q |
| |
|
|||| | |||||| ||||||||| | |||| |||| |||||||||| ||||||| |||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
28892639 |
tcagcaagtttattttgcccgtgatactattataaatagaaaaaacaagtgtgatccatatgaaataggtgagggggaagatgataccggtgagtctgat |
28892540 |
T |
|
| Q |
192 |
gcgagtgactttataggttctgattgtgatgacttggttggcacttcaagagttaaatcggtgaggagaaagaag---tgcagtgaaaagctgaagtcaa |
288 |
Q |
| |
|
| ||| |||| |||| |||||||| ||||||| ||| || || || |||||||||||||||||||||||||| |||| ||||||| || | | |
|
|
| T |
28892539 |
gtcagtaacttcatagattctgattatgatgacctggatgatacggcaggagttaaatcggtgaggagaaagaagaattgcataaaaaagctcaaattat |
28892440 |
T |
|
| Q |
289 |
taataaaagggaaagtggtgaaacatacgaaaaaggattttgttggatggggttcaagaagtctcatagattttcttaaaagtattggtagagacacgac |
388 |
Q |
| |
|
||| || ||||| | |||| | | |||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
28892439 |
taaatcaa---aaagtagagaaagacaagaaaaaagattttgttggatggggttcaagaagtctcgtagattttcttaaaaatattggtgaagacacgac |
28892343 |
T |
|
| Q |
389 |
tgaagcgttgtctgaacttgatgttgcttggatcatcatccagtactgccacacaaaccagctttttgaccccaagaaaaagaagatcgtaatttgtgat |
488 |
Q |
| |
|
|||| || || ||| |||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
28892342 |
caaagctttttccgaaattgatgttgcttcaatcatcagtaagtactgccacaaaaaccagctttttgaccccaagaaaaagaagaaggtaatctgtgat |
28892243 |
T |
|
| Q |
489 |
gcaaat |
494 |
Q |
| |
|
|||||| |
|
|
| T |
28892242 |
gcaaat |
28892237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 168 - 427
Target Start/End: Complemental strand, 28935748 - 28935501
Alignment:
| Q |
168 |
gaagacgatactggtgactctgatgcgagtgactttataggttctgattgtgatgacttggttggcacttcaagagttaaatcggtgaggagaaagaagt |
267 |
Q |
| |
|
||||| ||| ||||||||||||||| |||| |||||||||||||||||||||| ||| | | || ||| | |||||||||||||||||||||||| || |
|
|
| T |
28935748 |
gaagatgatgctggtgactctgatgtgagttactttataggttctgattgtgacgacctagatgacacagccggagttaaatcggtgaggagaaagaggt |
28935649 |
T |
|
| Q |
268 |
gcagtgaaaagctgaagtcaataataaaagggaaagtggtgaaacatacgaaaaaggattttgttggatggggttcaagaagtctcatagattttcttaa |
367 |
Q |
| |
|
||| |||| ||||||| |||| |||| || ||| | | ||| | || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28935648 |
gca---------tgaaatcaataa---aaggaaaagcagtaaaagagaagaacagtgactttgttggatggggttcaagaagtctcatagattttcttaa |
28935561 |
T |
|
| Q |
368 |
aagtattggtagagacacgactgaagcgttgtctgaacttgatgttgcttggatcatcat |
427 |
Q |
| |
|
| |||||||||||||||| | |||| || | |||| ||||||||||| ||| ||||| |
|
|
| T |
28935560 |
agatattggtagagacacggcaaaagcatttacggaacatgatgttgcttcgataatcat |
28935501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 28935879 - 28935749
Alignment:
| Q |
1 |
ttcatttgcaggagaaggtagatatgagagatccagatacaatagaaagttacttttttgaatattatcaagttatcaagaaaaaagaagggctgaattc |
100 |
Q |
| |
|
||||||| ||||| ||| ||||||||| ||||||||||||| | ||||||||||||| | |||||| || ||||| || ||||||||||||| ||| |
|
|
| T |
28935879 |
ttcattttcaggaaaagatagatatgaaagatccagatacatttgaaagttactttta-gtgtattatgaatacatcaaaaagaaagaagggctgagttc |
28935781 |
T |
|
| Q |
101 |
tcaggatgtttatactgcccgtgacatcatta |
132 |
Q |
| |
|
||| | ||| ||| ||||||||||||||||| |
|
|
| T |
28935780 |
tcaacaagttcatattgcccgtgacatcatta |
28935749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 34009631 - 34009511
Alignment:
| Q |
102 |
caggatgtttatactgcccgtgacatcattaaaaatggaaaaaacaa---------------atatgaagtaggtgagggggaagacgatactggtgact |
186 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
34009631 |
caggatgtttatattgcccgtgacatcattaacaattgaaaaaacaagtgtgacttggatccatatgaagtaggtgagggggaagatgatactggtgaat |
34009532 |
T |
|
| Q |
187 |
ctgatgcgagtgactttatag |
207 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
34009531 |
ctgatgtgagtgactttatag |
34009511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University