View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21072_low_6 (Length: 474)
Name: NF21072_low_6
Description: NF21072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21072_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 23821648 - 23821190
Alignment:
| Q |
1 |
tatctgaatatgaaatgaaactggcagccgcaccttccacttccagaagcttagatttgagcaagctacaatctgatcttgatgccgttattattaggga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23821648 |
tatctgaatatgaaatgaaactggcagccgcaccttccacttccagaagcttagatttgagcaagctacaatctgatcttgatgccgttattattaggga |
23821549 |
T |
|
| Q |
101 |
agatgaccccctgaatagcaggcacagttgagtgaagctgtatacgcaactcattagaaattgacaaacacaacctcagaagcttagatatgggcaattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23821548 |
agatgaccccctgaatagcaggcacagttgagtgaagctgtttacgcaactcattagaaattgacaaacacaacctcagaagcttagatatgagcaattt |
23821449 |
T |
|
| Q |
201 |
acaagcgggtctttctgccattgtcagggaaaatgaatatcttgatccacagttacaggataggtaaaagttatttttcaacaatttattggaaacaaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
23821448 |
acaagcgggtctttctgccattgtcagggaaaatgaatatcttgatccacagttacaggataggtgaaagttatttttcaacaatatattggaaacaaat |
23821349 |
T |
|
| Q |
301 |
aaaacagtcaattgccaaccctgccttttttagtcttcaaaattgattagaaaatagaaatacatcaagaa-ttttaattcttcggattgttttaatggt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23821348 |
aaaacagtcaattgccaaccctgccttttttagtcttcaaagttga-tagaaaatagaaatacatcaagaatttttaattcttcggattgttttaatggt |
23821250 |
T |
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| Q |
400 |
tgagtttcatgtttgttcttggatttgtccattatgttttaaattaggcctagatgtatt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23821249 |
tgagtttcatgtttgttcttggatttgtccattatgttttaaattaggcctagatgtatt |
23821190 |
T |
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