View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21073_high_1 (Length: 1001)

Name: NF21073_high_1
Description: NF21073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21073_high_1
NF21073_high_1
[»] chr8 (29 HSPs)
chr8 (634-920)||(27521057-27521341)
chr8 (696-892)||(287321-287517)
chr8 (701-908)||(40267229-40267437)
chr8 (699-908)||(12167088-12167298)
chr8 (699-908)||(12411516-12411726)
chr8 (701-825)||(10895868-10895992)
chr8 (751-919)||(16291970-16292138)
chr8 (702-890)||(17894953-17895138)
chr8 (671-869)||(18666770-18666969)
chr8 (701-819)||(15637303-15637422)
chr8 (672-819)||(15614134-15614281)
chr8 (671-869)||(23689104-23689302)
chr8 (702-821)||(23136464-23136584)
chr8 (672-819)||(15605781-15605928)
chr8 (673-819)||(15624344-15624491)
chr8 (701-819)||(15648132-15648251)
chr8 (683-869)||(45250949-45251135)
chr8 (712-783)||(15605115-15605185)
chr8 (712-783)||(15613467-15613538)
chr8 (748-819)||(15613470-15613541)
chr8 (701-811)||(15624169-15624280)
chr8 (701-807)||(15637499-15637606)
chr8 (701-811)||(15647957-15648068)
chr8 (701-819)||(16250410-16250528)
chr8 (744-819)||(23161056-23161131)
chr8 (712-784)||(15624340-15624413)
chr8 (712-784)||(15624523-15624596)
chr8 (712-784)||(15637299-15637372)
chr8 (712-784)||(15648128-15648201)
[»] chr5 (7 HSPs)
chr5 (748-920)||(19205800-19205971)
chr5 (699-818)||(29857693-29857812)
chr5 (20-78)||(19205969-19206027)
chr5 (671-869)||(27588592-27588791)
chr5 (702-825)||(9663010-9663135)
chr5 (859-919)||(29857849-29857910)
chr5 (773-819)||(501173-501219)
[»] chr4 (9 HSPs)
chr4 (671-892)||(24003-24224)
chr4 (762-892)||(13914663-13914793)
chr4 (836-919)||(52538248-52538332)
chr4 (701-778)||(52537785-52537862)
chr4 (671-779)||(13914737-13914845)
chr4 (757-825)||(14288140-14288208)
chr4 (746-869)||(35648015-35648138)
chr4 (701-815)||(18066730-18066844)
chr4 (847-896)||(12573975-12574024)
[»] chr2 (8 HSPs)
chr2 (728-892)||(45049525-45049689)
chr2 (422-606)||(31650922-31651107)
chr2 (699-818)||(5243259-5243378)
chr2 (683-869)||(21119837-21120024)
chr2 (744-825)||(16311597-16311678)
chr2 (671-819)||(24972195-24972344)
chr2 (853-919)||(5243159-5243226)
chr2 (723-782)||(45049559-45049618)
[»] scaffold0022 (1 HSPs)
scaffold0022 (671-892)||(101071-101293)
[»] scaffold0018 (1 HSPs)
scaffold0018 (706-892)||(67168-67354)
[»] chr3 (12 HSPs)
chr3 (701-918)||(44907703-44907923)
chr3 (432-610)||(39351432-39351610)
chr3 (701-908)||(30160478-30160686)
chr3 (702-908)||(20795258-20795465)
chr3 (702-890)||(6445097-6445282)
chr3 (701-825)||(6440851-6440975)
chr3 (702-825)||(37197829-37197952)
chr3 (744-824)||(20919310-20919390)
chr3 (744-824)||(20928272-20928352)
chr3 (674-869)||(50246546-50246742)
chr3 (758-825)||(37187498-37187565)
chr3 (750-825)||(9270742-9270817)
[»] scaffold0036 (1 HSPs)
scaffold0036 (432-611)||(35339-35517)
[»] chr1 (10 HSPs)
chr1 (701-919)||(3832169-3832393)
chr1 (701-819)||(3417311-3417429)
chr1 (762-892)||(8313947-8314077)
chr1 (703-819)||(11440825-11440943)
chr1 (702-908)||(19095360-19095567)
chr1 (671-782)||(8314018-8314129)
chr1 (671-869)||(22544110-22544308)
chr1 (701-869)||(46514372-46514540)
chr1 (628-754)||(16428118-16428246)
chr1 (671-869)||(15535181-15535379)
[»] scaffold0490 (1 HSPs)
scaffold0490 (702-908)||(9160-9367)
[»] scaffold0289 (1 HSPs)
scaffold0289 (671-825)||(22111-22265)
[»] chr6 (9 HSPs)
chr6 (701-908)||(21992518-21992727)
chr6 (744-869)||(1607923-1608050)
chr6 (718-882)||(4749465-4749628)
chr6 (852-919)||(23401271-23401339)
chr6 (744-869)||(11550290-11550417)
chr6 (702-821)||(4856913-4857034)
chr6 (701-815)||(27434713-27434827)
chr6 (769-819)||(30890055-30890105)
chr6 (835-892)||(32681527-32681584)
[»] chr7 (2 HSPs)
chr7 (671-869)||(7946432-7946631)
chr7 (683-819)||(29493967-29494104)
[»] scaffold0059 (2 HSPs)
scaffold0059 (744-824)||(67180-67260)
scaffold0059 (744-824)||(75285-75365)
[»] scaffold0003 (1 HSPs)
scaffold0003 (701-815)||(52536-52650)
[»] scaffold0216 (1 HSPs)
scaffold0216 (751-819)||(18094-18162)
[»] scaffold0179 (1 HSPs)
scaffold0179 (839-891)||(32057-32109)
[»] scaffold0191 (1 HSPs)
scaffold0191 (703-825)||(17020-17139)


Alignment Details
Target: chr8 (Bit Score: 136; Significance: 2e-70; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 634 - 920
Target Start/End: Complemental strand, 27521341 - 27521057
Alignment:
Q  634 atctttatataagacaaaagccttcatcaa-aagttatagtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaa 732  Q
    |||||||||||| |||||||||| |||| | |||  |||||||||||| ||| ||| |||| ||| | ||||||||||||||||||||||||||| ||||    
T  27521341 atctttatataatacaaaagcctacatctataagcaatagtacacgtgtcatattcacatttttcatgtcatttaatgcttttctatcaaccaattaaaa 27521242  T
Q  733 tggatcttgaatcattta-ttttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnn 831  Q
    |||||| || |||||||| |||| ||| |||||||| |||||||||||||||  | | ||||||||||||||||||||||||| ||||||||||          
T  27521241 tggatcctgcatcatttatttttttatcagccaatcaaaatggatcatgactaatttctttttcatgagccaatcaaaattgaccatgtcatgatttttt 27521142  T
Q  832 nncctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaaaatcatcgctttcaacccattctcttttcc 920  Q
      |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  27521141 ttcctatacatagataatttgtttttcattattttcatctacatcttcctcccataaaaaatca----tttcaacccattctcttttcc 27521057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 696 - 892
Target Start/End: Original strand, 287321 - 287517
Alignment:
Q  696 tcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttc 795  Q
    |||| ||||||||| |||||  |||||||||| ||||| |||| ||| ||||||||||| |||||||||||| |||||||||||||||| | |||||||     
T  287321 tcttctcatttaatactttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaatggatcatgactcatttatttttt 287420  T
Q  796 atgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaaaa 892  Q
    || ||||||||||||||||||||| ||| |        |||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||    
T  287421 attagccaatcaaaattgatcatgacataattttttttcctatatatagacaaattgtttttcattattttcatctacctcttcctcccataaaaaa 287517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 701 - 908
Target Start/End: Complemental strand, 40267437 - 40267229
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatc-atgactcttctatttttcatga 799  Q
    ||||||||||||||| ||||||||||| ||||| ||| |||||||||||| ||| |||||||||||| ||||||||| ||||||| | ||||||||||||    
T  40267437 tcatttaatgcttttttatcaaccaatcaaaatagatattgaatcatttactttttattagccaatcaaaatggatcaatgactcat-tatttttcatga 40267339  T
Q  800 gccaatcaaaattgatcatgtcatgannnnnnnnc-ctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaaaatcatcg 898  Q
    | |||||||||||||| ||| |||||        |  |||| | ||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |    
T  40267338 gtcaatcaaaattgattatgacatgattttttttctatatacagagacaatttgcttttcattattttcatctacatcttcctcccataaaaaatcattg 40267239  T
Q  899 ctttcaaccc 908  Q
    ||||||||||    
T  40267238 ctttcaaccc 40267229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 699 - 908
Target Start/End: Complemental strand, 12167298 - 12167088
Alignment:
Q  699 tttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatg 798  Q
    |||||||||||| || || |||||||||| |||||| ||||||| | |||  |||| ||||| |||||| |||||||||||||||| | |||||||||||    
T  12167298 tttcatttaatgtttctccatcaaccaatgaaaatgaatcttgacttattccttttctattatccaatcaaaatggatcatgactcatttatttttcatg 12167199  T
Q  799 agccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcg--tttttcattattttcatctacatcttcctcccataaaaaatcat 896  Q
    ||||||||||||||||||||  |||||         ||||||||| | |||| |  ||||| ||||||||||||||  ||||||||||||||||||||||    
T  12167198 agccaatcaaaattgatcataacatgattttttca-ctatatataaacaatttggtttttttattattttcatctatctcttcctcccataaaaaatcat 12167100  T
Q  897 cgctttcaaccc 908  Q
     |||||||||||    
T  12167099 tgctttcaaccc 12167088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 699 - 908
Target Start/End: Complemental strand, 12411726 - 12411516
Alignment:
Q  699 tttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatg 798  Q
    |||||||||||| || || |||||||||| |||||| ||||||| | |||  |||| ||||| |||||| |||||||||||||||| | |||||||||||    
T  12411726 tttcatttaatgtttctccatcaaccaatgaaaatgaatcttgacttattccttttctattatccaatcaaaatggatcatgactcatttatttttcatg 12411627  T
Q  799 agccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcg--tttttcattattttcatctacatcttcctcccataaaaaatcat 896  Q
    ||||||||||||||||||||  |||||         ||||||||| | |||| |  ||||| ||||||||||||||  ||||||||||||||||||||||    
T  12411626 agccaatcaaaattgatcataacatgattttttca-ctatatataaacaatttggtttttttattattttcatctatctcttcctcccataaaaaatcat 12411528  T
Q  897 cgctttcaaccc 908  Q
     |||||||||||    
T  12411527 tgctttcaaccc 12411516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 701 - 825
Target Start/End: Original strand, 10895868 - 10895992
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgag 800  Q
    |||||||||| |||| ||||||||||| || ||||||| ||| ||||||||||| |||||| ||||| |||||||||||||||| | |||||||||| ||    
T  10895868 tcatttaatgtttttttatcaaccaatcaatatggatcatgactcatttattttttattagtcaatcaaaatggatcatgactcatttatttttcattag 10895967  T
Q  801 ccaatcaaaattgatcatgtcatga 825  Q
    ||||||||||||||||||| |||||    
T  10895968 ccaatcaaaattgatcatgacatga 10895992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 751 - 919
Target Start/End: Original strand, 16291970 - 16292138
Alignment:
Q  751 ttttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataatt 850  Q
    |||| ||||| |||||| |||||||||||||||| | ||||||||||||| |||||||||||||||||  |||||         ||||||||| | ||||    
T  16291970 ttttttattatccaatcaaaatggatcatgactcatttatttttcatgagtcaatcaaaattgatcataacatgatttttca--ctatatataaacaatt 16292067  T
Q  851 cg-tttttcattattttcatctacatcttcctcccataaaaaatcatcgctttcaac-ccattctcttttc 919  Q
     | ||||| ||||||||||||||| |||||||||||||||||||||   |||||||| ||||||| |||||    
T  16292068 tgattttttattattttcatctacctcttcctcccataaaaaatcactactttcaactccattctattttc 16292138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 702 - 890
Target Start/End: Complemental strand, 17895138 - 17894953
Alignment:
Q  702 catttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagc 801  Q
    ||||||||| |||| ||||||||||| | |||||||| ||| ||||   |||| | |||||||||| |||  ||||||||||| | ||||||| ||||||    
T  17895138 catttaatgttttt-tatcaaccaatcagaatggatcatgactcataatttttttcttagccaatcaaaagagatcatgactcatttattttttatgagc 17895040  T
Q  802 caatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaa 890  Q
    |||||||||||||||||| ||||          ||||||||| | |||| |||||||||||| | ||||||| |||||||| |||||||    
T  17895039 caatcaaaattgatcatgacatg--ctttttttctatatataaacaatttgtttttcattatctccatctacctcttcctctcataaaa 17894953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 671 - 869
Target Start/End: Original strand, 18666770 - 18666969
Alignment:
Q  671 agtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcattta-ttttatattagccaatcta 769  Q
    |||||| ||| ||||||| |||||||| | ||||||||||||||| ||||| ||||| ||| || ||  ||| ||||| | |||| |||||||||||| |    
T  18666770 agtacatgtggcatcttcacattcttcatctcatttaatgcttttttatcatccaatcaaattgaattatgactcattcatttttttattagccaatcaa 18666869  T
Q  770 aatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcat 869  Q
     ||| | |||||||| | || ||||||| | ||||||||||| ||||||| | |||        |||||||||||  |||| ||||||||||||||||||    
T  18666870 gatgaaccatgactcatttagttttcatcaaccaatcaaaatggatcatgccttgatttttttccctatatataggcaatttgtttttcattattttcat 18666969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 701 - 819
Target Start/End: Complemental strand, 15637422 - 15637303
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaa-tggatcatgactcttctatttttcatga 799  Q
    |||||||||| ||| |||||| ||||| | ||||||| ||||  |||||||||||||| | |||||  ||| ||||||||||||| | | ||||||||||    
T  15637422 tcatttaatgttttcctatcatccaatgacaatggattttgacacatttattttatatcaaccaataaaaaatggatcatgactcatttgtttttcatga 15637323  T
Q  800 gccaatcaaaattgatcatg 819  Q
    |||||||| ||| |||||||    
T  15637322 gccaatcataatggatcatg 15637303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 672 - 819
Target Start/End: Complemental strand, 15614281 - 15614134
Alignment:
Q  672 gtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaa 771  Q
    |||||||||||||||||  |||  || | |||||||||| |||| ||||| ||||| | ||||||| ||||  |||||||||||||| | |||||  |||    
T  15614281 gtacacgtgacatcttcatatttctcatctcatttaatgtttttttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaa 15614182  T
Q  772 tggatcatgactcttctatttttcatgagccaatcaaaattgatcatg 819  Q
      ||||||||| | | | ||||| |||||||||||| ||| |||||||    
T  15614181 aagatcatgacccatttgttttttatgagccaatcataatagatcatg 15614134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 671 - 869
Target Start/End: Complemental strand, 23689302 - 23689104
Alignment:
Q  671 agtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcattta-ttttatattagccaatcta 769  Q
    |||||| ||||||||||| |||||||| | ||||||||||||||  ||||| ||||| ||| || ||  ||| ||||| | |||| |||||| ||||| |    
T  23689302 agtacatgtgacatcttcacattcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagtcaatcaa 23689203  T
Q  770 aatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcat 869  Q
     ||| |  ||||||| | || ||||||| | ||||||||||||||||||| | |||        |||||||||| | |||| ||||||||||||||||||    
T  23689202 gatgaactatgactcatttagttttcatcaaccaatcaaaattgatcatgccttga-tttttttcctatatataaacaatttgtttttcattattttcat 23689104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 702 - 821
Target Start/End: Original strand, 23136464 - 23136584
Alignment:
Q  702 catttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactc-ttctatttttcatgag 800  Q
    ||||||||| |||  ||||| ||||| ||| || ||  ||| ||||||||||| |||||||||||| |||||  ||||||| | || || ||||||| ||    
T  23136464 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattagccaatcaaaatgattcatgacactttatagttttcatcag 23136563  T
Q  801 ccaatcaaaattgatcatgtc 821  Q
    ||| |||||||||||||||||    
T  23136564 ccagtcaaaattgatcatgtc 23136584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 672 - 819
Target Start/End: Complemental strand, 15605928 - 15605781
Alignment:
Q  672 gtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaa 771  Q
    |||||||||||||||||  |||  || | |||||||||| |||| ||||| ||||| | ||||||| ||||  |||||||||||||| | |||||  |||    
T  15605928 gtacacgtgacatcttcatatttctcatctcatttaatgtttttttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaa 15605829  T
Q  772 tggatcatgactcttctatttttcatgagccaatcaaaattgatcatg 819  Q
      ||||||||| | | | ||||| |||||||||| | ||| |||||||    
T  15605828 aagatcatgacccatttgttttttatgagccaattataatagatcatg 15605781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 673 - 819
Target Start/End: Complemental strand, 15624491 - 15624344
Alignment:
Q  673 tacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaat 772  Q
    ||||||||||||||||  |||  || | |||||||||| |||  ||||| ||||| ||||  ||| ||||  |||||||||||||| | |||||  |||     
T  15624491 tacacgtgacatcttcatatttctcatctcatttaatgttttcttatcatccaatcaaaaaagattttgacacatttattttatatcaaccaatagaaaa 15624392  T
Q  773 -ggatcatgactcttctatttttcatgagccaatcaaaattgatcatg 819  Q
     |||||||||||| | | |||||||| ||||||||||||| |||||||    
T  15624391 aggatcatgactcatttgtttttcatcagccaatcaaaatggatcatg 15624344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 701 - 819
Target Start/End: Complemental strand, 15648251 - 15648132
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaat-ggatcatgactcttctatttttcatga 799  Q
    |||||||||| |||  ||||| ||||| ||||  ||| ||||  |||||||||||||| | |||||  |||  |||||||||||| | | ||||||||||    
T  15648251 tcatttaatgttttcttatcatccaatcaaaaaagattttgacacatttattttatatcaaccaatagaaaaaggatcatgactcatttgtttttcatga 15648152  T
Q  800 gccaatcaaaattgatcatg 819  Q
    |||||||||||| |||||||    
T  15648151 gccaatcaaaatggatcatg 15648132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 683 - 869
Target Start/End: Complemental strand, 45251135 - 45250949
Alignment:
Q  683 atcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttat-attagccaatctaaatggatcatga 781  Q
    |||||| || ||||| | ||||||||||||||  ||||| ||||| ||| || ||  ||| ||||| ||||| | ||||||| ||| | ||| | |||||    
T  45251135 atcttcacaatcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagccgatcaagatgaaccatga 45251036  T
Q  782 ctcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcat 869  Q
    ||| | || ||||||| | ||||||||||||||||||| | |||        |||||||||||| |||| ||||||||||||||||||    
T  45251035 ctcatttagttttcatcaaccaatcaaaattgatcatgccttga-tttttttcctatatatagacaatttgtttttcattattttcat 45250949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 783
Target Start/End: Complemental strand, 15605185 - 15605115
Alignment:
Q  712 ttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgact 783  Q
    |||| ||||||||||||||||  |||| ||| |||||| |||| ||| |||||||| |||||||||||||||    
T  15605185 ttttatatcaaccaataaaaaaagatcatgactcatttttttt-tatgagccaatcaaaatggatcatgact 15605115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 783
Target Start/End: Complemental strand, 15613538 - 15613467
Alignment:
Q  712 ttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgact 783  Q
    |||| ||||||||||||||||  |||| ||| |||||| ||||  || |||||||| |||||||||||||||    
T  15613538 ttttatatcaaccaataaaaaaagatcatgactcatttttttttcatgagccaatcaaaatggatcatgact 15613467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 748 - 819
Target Start/End: Complemental strand, 15613541 - 15613470
Alignment:
Q  748 ttattttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatg 819  Q
    ||||||||||| | |||||  |||  ||||||||||| | | |||||||||||||||||||||| |||||||    
T  15613541 ttattttatatcaaccaataaaaaaagatcatgactcatttttttttcatgagccaatcaaaatggatcatg 15613470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 701 - 811
Target Start/End: Complemental strand, 15624280 - 15624169
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaat-ggatcatgactcttctatttttcatga 799  Q
    |||||||||| |||  ||||| ||||| ||||||||| ||||  | |||||||||||| | |||||  |||| |||||||||||| | | ||||| ||||    
T  15624280 tcatttaatgttttcttatcatccaatcaaaatggattttgacacgtttattttatatcaaccaataaaaataggatcatgactcatttgtttttaatga 15624181  T
Q  800 gccaatcaaaat 811  Q
    |||||| |||||    
T  15624180 gccaattaaaat 15624169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 701 - 807
Target Start/End: Complemental strand, 15637606 - 15637499
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaa-tggatcatgactcttctatttttcatga 799  Q
    |||||||||| ||| |||||| ||||| | ||||||| ||||  |||||||||||||| | |||||  |||  |||||||||||| | | ||||||||||    
T  15637606 tcatttaatgttttcctatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatga 15637507  T
Q  800 gccaatca 807  Q
     |||||||    
T  15637506 tccaatca 15637499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 701 - 811
Target Start/End: Complemental strand, 15648068 - 15647957
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaat-ggatcatgactcttctatttttcatga 799  Q
    |||||||||| |||  ||||| ||||| ||||||||| |||   | |||||||||||| | |||||  |||| |||||||||||| | | ||||| ||||    
T  15648068 tcatttaatgttttcttatcatccaatcaaaatggattttggcacgtttattttatatcaaccaataaaaataggatcatgactcatttgtttttaatga 15647969  T
Q  800 gccaatcaaaat 811  Q
    ||||||||||||    
T  15647968 gccaatcaaaat 15647957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 701 - 819
Target Start/End: Original strand, 16250410 - 16250528
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaat-ggatcatgactcttctatttttcatga 799  Q
    |||||||||| |||  ||||| ||||| ||||| |||  |||  ||||| |||||||| | |||||| |||  ||| |||||||| | ||||||||||||    
T  16250410 tcatttaatgttttcttatcatccaatcaaaatagattatgacacatttgttttatatcaaccaatcaaaaaaggagcatgactcat-tatttttcatga 16250508  T
Q  800 gccaatcaaaattgatcatg 819  Q
    |||||||||||| |||||||    
T  16250509 gccaatcaaaatggatcatg 16250528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 744 - 819
Target Start/End: Complemental strand, 23161131 - 23161056
Alignment:
Q  744 tcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatg 819  Q
    |||||| |||| |||||| ||||| ||||| |||||||| | | || |||||||  ||||||||||||||||||||    
T  23161131 tcatttcttttttattagtcaatcaaaatgaatcatgacacatttagttttcataggccaatcaaaattgatcatg 23161056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 712 - 784
Target Start/End: Complemental strand, 15624413 - 15624340
Alignment:
Q  712 ttttctatcaaccaata-aaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactc 784  Q
    |||| |||||||||||| |||| ||||| ||| |||||| ||||  || |||||||| ||||||||||||||||    
T  15624413 ttttatatcaaccaatagaaaaaggatcatgactcatttgtttttcatcagccaatcaaaatggatcatgactc 15624340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 712 - 784
Target Start/End: Complemental strand, 15624596 - 15624523
Alignment:
Q  712 ttttctatcaaccaataaaaat-ggatcttgaatcatttattttatattagccaatctaaatggatcatgactc 784  Q
    |||| ||||||||||||||||  ||||| ||| |||||| |||| ||| ||||||||  |||||||||||||||    
T  15624596 ttttatatcaaccaataaaaaaaggatcatgactcatttgttttttatgagccaatcataatggatcatgactc 15624523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 712 - 784
Target Start/End: Complemental strand, 15637372 - 15637299
Alignment:
Q  712 ttttctatcaaccaataaaaa-tggatcttgaatcatttattttatattagccaatctaaatggatcatgactc 784  Q
    |||| |||||||||||||||| |||||| ||| |||||| ||||  || ||||||||  |||||||||||||||    
T  15637372 ttttatatcaaccaataaaaaatggatcatgactcatttgtttttcatgagccaatcataatggatcatgactc 15637299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 712 - 784
Target Start/End: Complemental strand, 15648201 - 15648128
Alignment:
Q  712 ttttctatcaaccaata-aaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactc 784  Q
    |||| |||||||||||| |||| ||||| ||| |||||| ||||  || |||||||| ||||||||||||||||    
T  15648201 ttttatatcaaccaatagaaaaaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgactc 15648128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 5e-68; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 748 - 920
Target Start/End: Complemental strand, 19205971 - 19205800
Alignment:
Q  748 ttattttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagata 847  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||        ||||||||||||||    
T  19205971 ttattttatattagccaatctaaatggatcatgactcatctatttttcatgagccaatcaaaattgatcatatcatgattttttt-cctatatatagata 19205873  T
Q  848 attcgtttttcattattttcatctacatcttcctcccataaaaaatcatcgctttcaacccattctcttttcc 920  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19205872 atttgtttttcattattttcatctacatcttcctcccataaaaaatcatcgctttcaacccattctcttttcc 19205800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 699 - 818
Target Start/End: Original strand, 29857693 - 29857812
Alignment:
Q  699 tttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatg 798  Q
    |||||||||||| || || |||||||||| |||||| |||||||   |||  |||| ||||| |||||| |||||||||||||||| | |||||||||||    
T  29857693 tttcatttaatgtttctccatcaaccaatgaaaatgaatcttgacgtattccttttctattatccaatcaaaatggatcatgactcatttatttttcatg 29857792  T
Q  799 agccaatcaaaattgatcat 818  Q
    || |||||||||||||||||    
T  29857793 agtcaatcaaaattgatcat 29857812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 19206027 - 19205969
Alignment:
Q  20 ttacctacagaagacaaagtgcagctggtcaagagtgttgttaacatcatgctcactta 78  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19206027 ttacctacagaagacaaagtgcagctgggcaagagtgttgttaacatcatgctcactta 19205969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 671 - 869
Target Start/End: Original strand, 27588592 - 27588791
Alignment:
Q  671 agtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttat-attagccaatcta 769  Q
    |||||| ||| ||||||| |||||||| | |||||||||  |||  ||||| ||||| ||| || ||  ||| ||||||||||| | ||||||||||| |    
T  27588592 agtacatgtggcatcttcacattcttcatctcatttaatattttcttatcatccaatcaaattgaattatgactcatttatttttttattagccaatcaa 27588691  T
Q  770 aatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcat 869  Q
     ||| | |||||||| | || ||||||| | ||||||||||||||||||| | |||        || ||||||||| |||| ||||||||||||||||||    
T  27588692 gatgaaccatgactcatttagttttcatcaaccaatcaaaattgatcatgccttgattttttttccaatatatagacaatttgtttttcattattttcat 27588791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 702 - 825
Target Start/End: Complemental strand, 9663135 - 9663010
Alignment:
Q  702 catttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactc--ttctatttttcatga 799  Q
    ||||||||| |||  ||||| ||||| ||| || ||  ||| ||||||||||| |||||||||||| |||||  |||| || |  ||||| ||||||| |    
T  9663135 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattagccaatcaaaatgattcataacacatttctagttttcatca 9663036  T
Q  800 gccaatcaaaattgatcatgtcatga 825  Q
    |||||||||||||| |||||||||||    
T  9663035 gccaatcaaaattgttcatgtcatga 9663010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 859 - 919
Target Start/End: Original strand, 29857849 - 29857910
Alignment:
Q  859 attattttcatctacatcttcctcccataaaaaatcatcgctttcaac-ccattctcttttc 919  Q
    ||||||||||||||| |||||||||||||||||||||  ||||||||| ||||||| |||||    
T  29857849 attattttcatctacctcttcctcccataaaaaatcactgctttcaacgccattctattttc 29857910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 819
Target Start/End: Original strand, 501173 - 501219
Alignment:
Q  773 ggatcatgactcttctatttttcatgagccaatcaaaattgatcatg 819  Q
    |||||||||||| | | |||||||||||||||||||||| |||||||    
T  501173 ggatcatgactcatttgtttttcatgagccaatcaaaatagatcatg 501219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 9e-48; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 671 - 892
Target Start/End: Complemental strand, 24224 - 24003
Alignment:
Q  671 agtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaa 770  Q
    ||||||| || |||||||  |||  |||| |||||||||| ||||  |||||||||| ||||| |||| ||| ||||||||||| |||||||||||| ||    
T  24224 agtacacatggcatcttcaaatttctcttctcatttaatgatttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaa 24125  T
Q  771 atggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcatc 870  Q
    |||||| ||||||| | |||||||||| ||||||||||||||||||||| |||||        |||||||||||| || | |||||||||||||||||||    
T  24124 atggataatgactcatttatttttcattagccaatcaaaattgatcatgacatgattttttttcctatatatagacaaattgtttttcattattttcatc 24025  T
Q  871 tacatcttcctcccataaaaaa 892  Q
    ||| ||||||||||||||||||    
T  24024 tacctcttcctcccataaaaaa 24003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 762 - 892
Target Start/End: Complemental strand, 13914793 - 13914663
Alignment:
Q  762 ccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcatt 861  Q
    |||||| |||| ||||||||||| | ||||||| || ||||||||||||||||||||  |||||        |||||||||||| || | ||||||||||    
T  13914793 ccaatcaaaatagatcatgactcatttattttttattagccaatcaaaattgatcattacatgattttttttcctatatatagacaaattgtttttcatt 13914694  T
Q  862 attttcatctacatcttcctcccataaaaaa 892  Q
    |||||||||||| ||||||||||||||||||    
T  13914693 attttcatctacctcttcctcccataaaaaa 13914663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 836 - 919
Target Start/End: Original strand, 52538248 - 52538332
Alignment:
Q  836 tatatatagataattcgtttttcattattttcatctacatcttcctcccataaaaaatcatcgctttcaaccc-attctcttttc 919  Q
    |||||| ||| |||| | |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  52538248 tatatagagacaatttgcttttcattattttcatctacatcttcctcccataaaaattcatagctttcaaccctattctcttttc 52538332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 701 - 778
Target Start/End: Original strand, 52537785 - 52537862
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatca 778  Q
    ||||||||||||||||||||||||||| ||||| ||| || ||||||||| ||| ||||||| |||| ||||||||||    
T  52537785 tcatttaatgcttttctatcaaccaatcaaaatagatattaaatcatttactttttattagcaaatcaaaatggatca 52537862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 671 - 779
Target Start/End: Complemental strand, 13914845 - 13914737
Alignment:
Q  671 agtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaa 770  Q
    ||||||| || |||||||  |||  |||| |||||||||||||||  |||||||||| ||||| |||| ||| ||||||||||| |||||||||||| ||    
T  13914845 agtacacatggcatcttcaaatttatcttctcatttaatgctttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaa 13914746  T
Q  771 atggatcat 779  Q
    || ||||||    
T  13914745 attgatcat 13914737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 757 - 825
Target Start/End: Complemental strand, 14288208 - 14288140
Alignment:
Q  757 attagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatga 825  Q
    ||||||||||| ||||| |||||||||| | |||||||||| ||||||||||||||||||||| |||||    
T  14288208 attagccaatcaaaatgaatcatgactcatttatttttcattagccaatcaaaattgatcatgacatga 14288140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 746 - 869
Target Start/End: Original strand, 35648015 - 35648138
Alignment:
Q  746 atttattttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatataga 845  Q
    ||||||||| |||||||||||| |||||  |||| || | | || ||||||  ||||||||||||||| |||||||||||        ||||||||| ||    
T  35648015 atttattttttattagccaatcaaaatgattcataacacatttagttttcactagccaatcaaaattgttcatgtcatgattttttttcctatatattga 35648114  T
Q  846 taattcgtttttcattattttcat 869  Q
     |||| ||||||||||||||||||    
T  35648115 caatttgtttttcattattttcat 35648138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 701 - 815
Target Start/End: Complemental strand, 18066844 - 18066730
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgag 800  Q
    |||||||||| |||  ||||| ||||| ||| || ||  ||| ||||||||||| |||||||||||| | ||||| |||||||| | || ||||||  |     
T  18066844 tcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaatcaagatggaccatgactcatttagttttcaccaa 18066745  T
Q  801 ccaatcaaaattgat 815  Q
    |||||||||||||||    
T  18066744 ccaatcaaaattgat 18066730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 847 - 896
Target Start/End: Original strand, 12573975 - 12574024
Alignment:
Q  847 aattcgtttttcattattttcatctacatcttcctcccataaaaaatcat 896  Q
    |||| |||||||||||||| ||||||| |||||||||||||||| |||||    
T  12573975 aatttgtttttcattatttccatctacctcttcctcccataaaagatcat 12574024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 5e-40; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 728 - 892
Target Start/End: Original strand, 45049525 - 45049689
Alignment:
Q  728 aaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgann 827  Q
    |||||| |||| ||| ||||||| ||| |||||||||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||| |||||      
T  45049525 aaaaatagatcatgactcatttaatttttattagccaatcaaaatggatcatgactcatttatttttcattagccaatcaaaattgatcatgacatgatt 45049624  T
Q  828 nnnnnncctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaaaa 892  Q
          |||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||    
T  45049625 ttttttcctatatatagacaaattgtttttcattattttcatctacctcttcctcccataaaaaa 45049689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 422 - 606
Target Start/End: Complemental strand, 31651107 - 31650922
Alignment:
Q  422 agtaaaattcagttggaaaaacaccaccaaaagataaatatgtta-gtcgtttctcatagacaagcacatgtgaaattaaaccaatcatttggagtaaaa 520  Q
    ||||| ||| |||||||||||||||||||||||| |||||||||  || |||| ||||| |||| ||| ||||||| ||||    |||||||||||||||    
T  31651107 agtaagattgagttggaaaaacaccaccaaaagagaaatatgttttgttgtttttcataaacaaacacgtgtgaaactaaagtggtcatttggagtaaaa 31651008  T
Q  521 tcaaatttagaagaaaaatcaaatgaaagcttataactcattcgtgtgctttgtacgaatattgttctcgtgcatttaagcatttt 606  Q
    |||||| || ||||||||| ||||||||||||| || ||||||||||| |||||||||| |||||| |||| ||||||| ||||||    
T  31651007 tcaaatgtaaaagaaaaattaaatgaaagcttacaagtcattcgtgtgttttgtacgaacattgttgtcgtacatttaaacatttt 31650922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 699 - 818
Target Start/End: Complemental strand, 5243378 - 5243259
Alignment:
Q  699 tttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatg 798  Q
    |||||||||||| || || |||||||||| |||||| |||||||   |||  |||| ||||| |||||| |||||||||||||||| | |||||||||||    
T  5243378 tttcatttaatgtttctccatcaaccaatgaaaatgaatcttgacgtattccttttctattatccaatcaaaatggatcatgactcatttatttttcatg 5243279  T
Q  799 agccaatcaaaattgatcat 818  Q
    ||||||||||||||||||||    
T  5243278 agccaatcaaaattgatcat 5243259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 683 - 869
Target Start/End: Original strand, 21119837 - 21120024
Alignment:
Q  683 atcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttatttta-tattagccaatctaaatggatcatga 781  Q
    ||||||||||||||| | ||||||||||||||  ||||| ||||| ||| || ||  ||| ||||| |||||| |||||||||||| | ||| | |||||    
T  21119837 atcttcgcattcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcattttattattagccaatcaagatgaaccatga 21119936  T
Q  782 ctcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcat 869  Q
    ||| | || |||| || | ||||| |||||||||||||   |||        |||||||||||| |||| ||||||||||||||||||    
T  21119937 ctcatttagtttttatcaaccaattaaaattgatcatgctttgattttttttcctatatatagacaatttgtttttcattattttcat 21120024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 744 - 825
Target Start/End: Complemental strand, 16311678 - 16311597
Alignment:
Q  744 tcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatga 825  Q
    ||||||||||| ||||||  |||| |||||||||||||||| | || |||| || |||||||||||||| |||||| |||||    
T  16311678 tcatttattttttattagttaatcaaaatggatcatgactcatttaatttttatcagccaatcaaaatttatcatgccatga 16311597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 671 - 819
Target Start/End: Complemental strand, 24972344 - 24972195
Alignment:
Q  671 agtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcattta-ttttatattagccaatcta 769  Q
    |||||| ||| ||||||| |||||||| | ||||||||||||||  ||||| ||||| ||| || ||  ||| || || | |||| |||||| ||||| |    
T  24972344 agtacatgtggcatcttcacattcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcgttcatttttttattagtcaatcaa 24972245  T
Q  770 aatggatcatgactcttctatttttcatgagccaatcaaaattgatcatg 819  Q
     ||| | |||||||| | || ||||||| | |||||||||||||||||||    
T  24972244 gatgaaccatgactcatttagttttcatcaaccaatcaaaattgatcatg 24972195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 853 - 919
Target Start/End: Complemental strand, 5243226 - 5243159
Alignment:
Q  853 tttttcattattttcatctacatcttcctcccataaaaaatcatcgctttcaac-ccattctcttttc 919  Q
    ||||| ||||||||| ||||| |||||||| ||||||||||||  ||||||||| ||||||| |||||    
T  5243226 ttttttattattttcgtctacctcttcctctcataaaaaatcactgctttcaacgccattctattttc 5243159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 782
Target Start/End: Original strand, 45049559 - 45049618
Alignment:
Q  723 ccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgac 782  Q
    ||||| |||||||||| ||| |||||||||||  ||||||||||| |||| |||||||||    
T  45049559 ccaatcaaaatggatcatgactcatttatttttcattagccaatcaaaattgatcatgac 45049618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 83; Significance: 8e-39; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 671 - 892
Target Start/End: Original strand, 101071 - 101293
Alignment:
Q  671 agtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaa 770  Q
    ||||||| || |||||||  ||| ||||| |||||||||||||||  |||||||||| ||||| |||| ||| ||||||||||| |||||||||||| ||    
T  101071 agtacacatggcatcttcaaatttttcttctcatttaatgctttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaa 101170  T
Q  771 atggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatga-nnnnnnnncctatatatagataattcgtttttcattattttcat 869  Q
    |||||||||||||| | |||||||||| |||||||||||||||| |||  |||||          ||||||||||| || | ||||| ||||||||||||    
T  101171 atggatcatgactcatttatttttcataagccaatcaaaattgagcattacatgattttttttttctatatatagacaaattgttttacattattttcat 101270  T
Q  870 ctacatcttcctcccataaaaaa 892  Q
    |||| |||| |||||||||||||    
T  101271 ctacctctttctcccataaaaaa 101293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 706 - 892
Target Start/End: Complemental strand, 67354 - 67168
Alignment:
Q  706 taatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagccaat 805  Q
    ||||| |||| ||||||||||| |||||||||| ||| ||||||||||| ||||||| |||| ||||||||||| |||| | |||||||||| |||||||    
T  67354 taatgtttttttatcaaccaattaaaatggatcatgactcatttattttttattagcaaatcaaaatggatcataactcatttatttttcattagccaat 67255  T
Q  806 caaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaaaa 892  Q
    ||||||| ||||||  |||         |||||||||| | |||| |||||||||||||||||||||| |||||||||| |||||||    
T  67254 caaaatttatcatgaaatggttttttttcctatatatacacaatttgtttttcattattttcatctacctcttcctcccttaaaaaa 67168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 701 - 918
Target Start/End: Complemental strand, 44907923 - 44907703
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatca-tgactcttctatttttcatga 799  Q
    |||||||||| |||||||||||||||| ||||| ||| |||||||||||| ||| | |||||||||| |||||||||| |||||| | |||||| |||||    
T  44907923 tcatttaatgtttttctatcaaccaatcaaaatagatattgaatcatttacttttt-ttagccaatcaaaatggatcaatgactcatttatttt-catga 44907826  T
Q  800 gccaatcaaaattgatcatgtcatgannnnnnnnc-ctatatatagata--attcgtttttcattattttcatctacatcttcctcccataaaaaatcat 896  Q
    |  ||||||||||||| ||| |||||          ||||||||||| |  ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  44907825 gttaatcaaaattgattatgacatgattttttttttctatatatagagacaatttgcttttcattattttcatctacatcttcctcccataaaaaatcat 44907726  T
Q  897 cgctttcaaccc-attctctttt 918  Q
     ||||||||||| ||||||||||    
T  44907725 tgctttcaaccctattctctttt 44907703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 432 - 610
Target Start/End: Original strand, 39351432 - 39351610
Alignment:
Q  432 agttggaaaaacaccaccaaaagataaatatgttagtcgtt--tctcatagacaagcacatgtgaaattaaaccaatcatttggagtaaaatcaaattta 529  Q
    |||||||||||||| ||||||||| ||| ||||| ||||||  ||||||| |||| ||||||||||| ||| |  ||||||||| |||||||||||||||    
T  39351432 agttggaaaaacactaccaaaagagaaagatgtttgtcgttcctctcataaacaaacacatgtgaaactaa-ctgatcatttggtgtaaaatcaaattta 39351530  T
Q  530 gaagaaaaatcaaatgaaagcttataactcattcgtgtgctttgtacgaatattgttctcgtgcatttaagcattttcctt 610  Q
     || | |||| ||||||||| ||||| | ||||||||||||||||||||| | |||| |||| ||||||||||||||||||    
T  39351531 aaaaataaattaaatgaaagtttatatc-cattcgtgtgctttgtacgaacaatgttgtcgtacatttaagcattttcctt 39351610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 701 - 908
Target Start/End: Original strand, 30160478 - 30160686
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaat-ggatcatgactcttctatttttcatga 799  Q
    |||||||||| |||  ||||| ||||| |||||||||  |||  |||||||||||||| | |||||  |||  |||||||||||| | | ||||||||||    
T  30160478 tcatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatga 30160577  T
Q  800 gccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaaaatcatcgc 899  Q
    |||||||||||| |||||||  ||||         ||||||||||| ||||  ||||||||||||||||||||  ||||||||||| ||||| |||| |     
T  30160578 gccaatcaaaatggatcatgatatgatttttttttctatatatagacaatttatttttcattattttcatctatctcttcctcccacaaaaactcattga 30160677  T
Q  900 tttcaaccc 908  Q
    |||||||||    
T  30160678 tttcaaccc 30160686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 702 - 908
Target Start/End: Complemental strand, 20795465 - 20795258
Alignment:
Q  702 catttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaat-ggatcatgactcttctatttttcatgag 800  Q
    ||||||||| |||  ||||| ||||| |||||||||  |||  |||||||||||||| | |||||  |||  |||||||||||| | | |||||||||||    
T  20795465 catttaatgttttcatatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 20795366  T
Q  801 ccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaaaatcatcgct 900  Q
    |||||||||||  ||||||  ||||         ||||||||||| |||| |||||||||||||||||||||  ||||||||||| ||||| |||| | |    
T  20795365 ccaatcaaaatgaatcatgatatgatttttttttctatatatagacaatttgtttttcattattttcatctatctcttcctcccacaaaaactcattgat 20795266  T
Q  901 ttcaaccc 908  Q
    ||||||||    
T  20795265 ttcaaccc 20795258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 702 - 890
Target Start/End: Complemental strand, 6445282 - 6445097
Alignment:
Q  702 catttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagc 801  Q
    ||||||||| |||| ||||||||||| | |||||||| ||| ||||   |||| | |||||||||| |||  ||||||||||| | ||||||| ||||||    
T  6445282 catttaatgttttt-tatcaaccaatcagaatggatcatgactcataatttttttcttagccaatcaaaagagatcatgactcatttattttttatgagc 6445184  T
Q  802 caatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaa 890  Q
    |||||||||||||||||| ||||          ||||||||| | |||| |||||||||||| | ||||||| |||||||| |||||||    
T  6445183 caatcaaaattgatcatgacatg--ctttttttctatatataaacaatttgtttttcattatctccatctacctcttcctctcataaaa 6445097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 701 - 825
Target Start/End: Complemental strand, 6440975 - 6440851
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgag 800  Q
    |||||||||| ||||  |||||||||| |||||  | | ||| ||| ||||||| |||| ||||||| ||||| |||||||||| | |||||||||| ||    
T  6440975 tcatttaatgttttttcatcaaccaatcaaaatataccatgactcaattattttttatttgccaatcaaaatgaatcatgactcatttatttttcattag 6440876  T
Q  801 ccaatcaaaattgatcatgtcatga 825  Q
     |||| ||||||||||||| |||||    
T  6440875 tcaattaaaattgatcatgacatga 6440851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 702 - 825
Target Start/End: Original strand, 37197829 - 37197952
Alignment:
Q  702 catttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagc 801  Q
    ||||||||| |||  ||||| ||||| ||| || ||  ||| ||||||||||| ||||| |||||| |||||  ||||||| | | || ||||||| |||    
T  37197829 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattaaccaatcaaaatgattcatgacacatttagttttcatcagc 37197928  T
Q  802 caatcaaaattgatcatgtcatga 825  Q
    ||||||||||||||||||||||||    
T  37197929 caatcaaaattgatcatgtcatga 37197952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 744 - 824
Target Start/End: Original strand, 20919310 - 20919390
Alignment:
Q  744 tcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatg 824  Q
    ||||||||||| |||||||||||| |||||  ||||||| | | || ||||||  ||||||||||||||||||||||||||    
T  20919310 tcatttattttttattagccaatcaaaatgattcatgacacatttagttttcaccagccaatcaaaattgatcatgtcatg 20919390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 744 - 824
Target Start/End: Original strand, 20928272 - 20928352
Alignment:
Q  744 tcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatg 824  Q
    ||||||||||| |||||||||||| |||||  ||||||| | | || ||||||  ||||||||||||||||||||||||||    
T  20928272 tcatttattttttattagccaatcaaaatgattcatgacacatttagttttcaccagccaatcaaaattgatcatgtcatg 20928352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 674 - 869
Target Start/End: Complemental strand, 50246742 - 50246546
Alignment:
Q  674 acacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatt--tattttatattagccaatctaaa 771  Q
    ||||||| ||||||| |||||||| | ||||||||||||||  ||||  ||||| ||| || ||  ||| |||||  | |||| |||||||||||| | |    
T  50246742 acacgtggcatcttcacattcttcatctcatttaatgctttcttatcgtccaatcaaattgaattatgactcattcattttttttattagccaatcaaga 50246643  T
Q  772 tggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcat 869  Q
    || | |||||||| | || ||||||| | |||||||||| |||||||| | |||        |||||||||||| |||| ||||||||||||||||||    
T  50246642 tgaaccatgactcatttagttttcatcaaccaatcaaaagtgatcatgccttga-tttttttcctatatatagacaatttgtttttcattattttcat 50246546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 758 - 825
Target Start/End: Original strand, 37187498 - 37187565
Alignment:
Q  758 ttagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatga 825  Q
    |||||||||| |||  ||||| ||||| | ||||||| |||||||||||||||||||||||| |||||    
T  37187498 ttagccaatcaaaagagatcacgactcatttattttttatgagccaatcaaaattgatcatgacatga 37187565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 750 - 825
Target Start/End: Complemental strand, 9270817 - 9270742
Alignment:
Q  750 attttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatga 825  Q
    ||||| |||| ||||||  ||||  |||||||||| | |||||||||| ||||||| ||||||||||||| |||||    
T  9270817 attttttatttgccaattaaaataaatcatgactcatttatttttcattagccaattaaaattgatcatgacatga 9270742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 432 - 611
Target Start/End: Original strand, 35339 - 35517
Alignment:
Q  432 agttggaaaaacaccaccaaaagataaatatgttagtcgtttctcatagacaagcacatgtgaaattaaaccaatcatttggagtaaaatcaaatttaga 531  Q
    |||||||||||||||||||||| ||||| ||||| ||| |||||| || |||| ||  |||||| | ||||   |||||| ||||| ||||||||||| |    
T  35339 agttggaaaaacaccaccaaaacataaagatgtttgtcatttctcgtaaacaaacatgtgtgaact-aaactggtcatttagagtagaatcaaatttaaa 35437  T
Q  532 agaaaaatcaaatgaaagcttataactcattcgtgtgctttgtacgaatattgttctcgtgcatttaagcattttcctta 611  Q
    ||| |||| ||||||||| ||||||||||||||||||||||||||||| ||| || | || |||||| ||||||||||||    
T  35438 agagaaattaaatgaaagtttataactcattcgtgtgctttgtacgaacatttttgttgtacatttacgcattttcctta 35517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 701 - 919
Target Start/End: Original strand, 3832169 - 3832393
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatc-atgactcttctatttttcatga 799  Q
    |||||||||| |||||||||||||||| ||||| ||| |||||||||||| ||| |||||||||||| || |||||| ||||||| | ||||||||||||    
T  3832169 tcatttaatgtttttctatcaaccaatcaaaatagatattgaatcatttactttttattagccaatcaaattggatcaatgactcatttatttttcatga 3832268  T
Q  800 gcc--aatcaaaattgatcatgtcatgannnnnnnncctatatat----agataattcgtttttcattattttcatctacatcttcctcccataaaaaat 893  Q
    | |  ||||||||||||| | | |||||        |||||||||    ||| |||| |  |||||||||||||||||||||| |||||||||||||||     
T  3832269 gtcaaaatcaaaattgattacgacatga-tttttttcctatatatatagagacaatttg-ctttcattattttcatctacatcatcctcccataaaaaaa 3832366  T
Q  894 catcgctttcaaccc-attctcttttc 919  Q
    ||| ||||||||||| |||||||||||    
T  3832367 cattgctttcaaccctattctcttttc 3832393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 701 - 819
Target Start/End: Original strand, 3417311 - 3417429
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgag 800  Q
    ||||||||||| ||| ||||||||||| ||||||  | |||| ||||  ||||| |||||| ||||| |||||||||||||||| | |||||||||| ||    
T  3417311 tcatttaatgcatttttatcaaccaatcaaaatgtttattgactcatccattttctattagtcaatcaaaatggatcatgactcatttatttttcatcag 3417410  T
Q  801 ccaatcaaaattgatcatg 819  Q
    |||||||||||||||||||    
T  3417411 ccaatcaaaattgatcatg 3417429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 762 - 892
Target Start/End: Complemental strand, 8314077 - 8313947
Alignment:
Q  762 ccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcatt 861  Q
    |||||| |||| ||||||||||| | ||||||| || ||||||||||||||||||||| |||||        |||||||||||| || |  |||||||||    
T  8314077 ccaatcaaaatagatcatgactcatttattttttattagccaatcaaaattgatcatgacatgattttttttcctatatatagacaaattatttttcatt 8313978  T
Q  862 attttcatctacatcttcctcccataaaaaa 892  Q
    |||||||||||| | ||||||||||||||||    
T  8313977 attttcatctacctattcctcccataaaaaa 8313947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 703 - 819
Target Start/End: Original strand, 11440825 - 11440943
Alignment:
Q  703 atttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactc--ttctatttttcatgag 800  Q
    ||||||||| ||| ||| ||||||| |||||||||||| | ||||||||||| |||||| ||||| ||||||||||||||||  || | |||||||| |     
T  11440825 atttaatgcatttttattaaccaatcaaaatggatcttaactcatttattttttattagtcaatcaaaatggatcatgactcatttatttttttcattaa 11440924  T
Q  801 ccaatcaaaattgatcatg 819  Q
    | |||||||||||||||||    
T  11440925 ctaatcaaaattgatcatg 11440943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 702 - 908
Target Start/End: Original strand, 19095360 - 19095567
Alignment:
Q  702 catttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaat-ggatcatgactcttctatttttcatgag 800  Q
    ||||||||| |||  |||||  ||||||||||||||  |||  |||||||||||||| | |||||  |||  |||||||||||| | | |||||||||||    
T  19095360 catttaatgttttcttatcattcaataaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 19095459  T
Q  801 ccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaaaatcatcgct 900  Q
    ||||||||||| ||||| |  ||||         ||||||||||| |||| |||||||||||||||||||||  |||||||||||  |||| |||| | |    
T  19095460 ccaatcaaaatggatcacgatatgatttttttttctatatatagacaatttgtttttcattattttcatctatctcttcctcccactaaaactcattgat 19095559  T
Q  901 ttcaaccc 908  Q
    ||||||||    
T  19095560 ttcaaccc 19095567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 671 - 782
Target Start/End: Complemental strand, 8314129 - 8314018
Alignment:
Q  671 agtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaa 770  Q
    ||||||| ||||||||||  |||  | || |||||||||| |||| ||||||||||| ||||| |||| ||| ||||||||||| |||||||||||| ||    
T  8314129 agtacacatgacatcttcaaatttcttttctcatttaatgtttttttatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaa 8314030  T
Q  771 atggatcatgac 782  Q
    || |||||||||    
T  8314029 attgatcatgac 8314018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 671 - 869
Target Start/End: Complemental strand, 22544308 - 22544110
Alignment:
Q  671 agtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttat-attagccaatcta 769  Q
    |||||| ||||||||||| |||||||| | ||||||||||||||  ||||| ||||| ||| || ||  ||| ||||| ||||| | ||||||||||| |    
T  22544308 agtacatgtgacatcttcacattcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagccaatcaa 22544209  T
Q  770 aatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcat 869  Q
     ||| | |||||||| | || ||||||| | ||||||||||||||||||| | |||        |||||||||| | |||| ||||||||||||||||||    
T  22544208 gatgaaccatgactcatttagttttcatcaaccaatcaaaattgatcatgccttga-tttttttcctatatataaacaatttgtttttcattattttcat 22544110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 701 - 869
Target Start/End: Original strand, 46514372 - 46514540
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgag 800  Q
    |||||||||| ||||  |||||||||| |||||  |||  || ||||||| ||| ||||  |||||| ||||| || |||| || | |||||||||| ||    
T  46514372 tcatttaatgttttttcatcaaccaatcaaaatatatcacgactcatttactttttatttaccaatcaaaatgaatgatgattcatttatttttcattag 46514471  T
Q  801 ccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcat 869  Q
    ||||| ||||||||||||| |||||        |||||||||||| || | | ||||||||||||||||    
T  46514472 ccaattaaaattgatcatgacatgattttttcccctatatatagacaacttgcttttcattattttcat 46514540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 628 - 754
Target Start/End: Original strand, 16428118 - 16428246
Alignment:
Q  628 atctttatctttatataagacaaaagccttcatcaaaagttatagtacac--gtgacatcttcgcattcttcttttcatttaatgcttttctatcaacca 725  Q
    |||||||||  ||||||| ||||| |||||| | |||| | ||||||||   ||||||||||   ||||| | |||||||||||| |||||||| || ||    
T  16428118 atctttatccatatataatacaaatgccttccttaaaattgatagtacatatgtgacatctttatattctccatttcatttaatgtttttctatgaatca 16428217  T
Q  726 ataaaaatggatcttgaatcatttatttt 754  Q
    || ||||| ||| ||||||||||||||||    
T  16428218 attaaaatagattttgaatcatttatttt 16428246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 671 - 869
Target Start/End: Complemental strand, 15535379 - 15535181
Alignment:
Q  671 agtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcattta-ttttatattagccaatcta 769  Q
    |||||| ||| ||||||| |||||||| |||||||||||| |||  ||||| ||||| ||| || ||  ||| ||||| | |||| |||||| ||||| |    
T  15535379 agtacatgtggcatcttcacattcttcatttcatttaatgttttcttatcatccaatcaaattgaattatgactcattcatttttttattagtcaatcaa 15535280  T
Q  770 aatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcat 869  Q
     ||| |  ||||||| | || ||||||| | ||||||||||||||||||| | |||        |||||||||| | |||| ||||||||||||||||||    
T  15535279 gatgaactatgactcatttagttttcatcaaccaatcaaaattgatcatgccttga-tttttttcctatatataaacaatttgtttttcattattttcat 15535181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 702 - 908
Target Start/End: Original strand, 9160 - 9367
Alignment:
Q  702 catttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaat-ggatcatgactcttctatttttcatgag 800  Q
    ||||||||| |||  ||||| ||||| |||||||||  | |  |||||||||||||| | |||||  |||  |||||||||||| | |||||||||||||    
T  9160 catttaatgttttcttatcatccaatcaaaatggattataacacatttattttatatcaaccaataaaaagaggatcatgactcatttatttttcatgag 9259  T
Q  801 ccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaaaatcatcgct 900  Q
    ||||||||||| |||||||  ||||         ||||||||||| |||| |||||||||||||||||||||  ||||||||||| ||||| |||| | |    
T  9260 ccaatcaaaatggatcatgatatgatttttttttctatatatagacaatttgtttttcattattttcatctatctcttcctcccacaaaaactcattgat 9359  T
Q  901 ttcaaccc 908  Q
    ||||||||    
T  9360 ttcaaccc 9367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 671 - 825
Target Start/End: Complemental strand, 22265 - 22111
Alignment:
Q  671 agtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaa 770  Q
    ||||||| ||||||||||  |||  || | |||||||||||||||  |||||||||| |||||  ||| ||| ||||||||||| |||| | ||||| ||    
T  22265 agtacacatgacatcttctaatttctcatctcatttaatgctttttcatcaaccaatcaaaatatatcatgactcatttattttttatttgtcaatcaaa 22166  T
Q  771 atggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatga 825  Q
    ||  |||||||||| | |||||||||| ||||||| ||||||||||||| |||||    
T  22165 ataaatcatgactcatttatttttcattagccaattaaaattgatcatgacatga 22111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 701 - 908
Target Start/End: Complemental strand, 21992727 - 21992518
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaat-ggatcatgactcttctatttttcatga 799  Q
    |||||||||| |||  ||||| ||||| |||||||||  |||  |||||||||||||| | |||||| |||  |||||||||||| | | |||||| |||    
T  21992727 tcatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaatcaaaagaggatcatgactcatttgtttttcttga 21992628  T
Q  800 gccaatcaaaattgatcatgtcatgannnnnnnnc-ctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaaaatcatcg 898  Q
    |||||||||||| |||||||  ||||          ||||||||||| |||| |||||||||||||||||||||  ||||||||||| ||||| |||| |    
T  21992627 gccaatcaaaatggatcatgatatgattttttttttctatatatagacaatttgtttttcattattttcatctatctcttcctcccacaaaaactcattg 21992528  T
Q  899 ctttcaaccc 908  Q
     |||||||||    
T  21992527 atttcaaccc 21992518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 744 - 869
Target Start/End: Complemental strand, 1608050 - 1607923
Alignment:
Q  744 tcatttattttatattagccaatctaaatggatcatgactcttctat--ttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatata 841  Q
    ||||||||||| |||||||||||| |||||  ||||||| | | |||  ||||||| |||||||||||||||||||||||||||        ||||||||    
T  1608050 tcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtcatgatttttttccctatata 1607951  T
Q  842 tagataattcgtttttcattattttcat 869  Q
    | || |||| |||||||||| |||||||    
T  1607950 ttgacaatttgtttttcattgttttcat 1607923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 718 - 882
Target Start/End: Original strand, 4749465 - 4749628
Alignment:
Q  718 atcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatca 817  Q
    |||||||||| | |||||||| ||| ||||  ||||| | |||| ||||| |||  ||||||||||| | ||||||| ||||||||||||||||||||||    
T  4749465 atcaaccaatcagaatggatcatgactcata-attttttcttagtcaatcaaaagagatcatgactcatttattttttatgagccaatcaaaattgatca 4749563  T
Q  818 tgtcatgannnnnnnncctatatatagataattcgtttttcattattttcatctacatcttcctc 882  Q
    || |||||          |||||||| | |||| |||||||||||| ||||||||| ||||||||    
T  4749564 tgacatgatttttttctatatatataaacaatttgtttttcattatcttcatctacctcttcctc 4749628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 852 - 919
Target Start/End: Original strand, 23401271 - 23401339
Alignment:
Q  852 gtttttcattattttcatctacatcttcctcccataaaaaatcatcgctttcaac-ccattctcttttc 919  Q
    |||||| ||||||||||||||| |||||||||||||||||||||  ||||||||| ||||||| |||||    
T  23401271 gttttttattattttcatctacctcttcctcccataaaaaatcactgctttcaacgccattctattttc 23401339  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 744 - 869
Target Start/End: Original strand, 11550290 - 11550417
Alignment:
Q  744 tcatttattttatattagccaatctaaatggatcatgactcttctat--ttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatata 841  Q
    ||||||||||| ||||| |||||| |||||  ||||||| | | |||  ||||||| ||||||||||||||||||||||| |||        ||||||||    
T  11550290 tcatttattttttattaaccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtcttgatttttttccctatata 11550389  T
Q  842 tagataattcgtttttcattattttcat 869  Q
    | || |||| |||||||||| |||||||    
T  11550390 ttgacaatttgtttttcattgttttcat 11550417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 702 - 821
Target Start/End: Complemental strand, 4857034 - 4856913
Alignment:
Q  702 catttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctat--ttttcatga 799  Q
    ||||||||| |||  ||||| ||||| ||| || ||  ||| ||||||||||| ||||| |||||| |||||  ||||||| | | |||  ||||||| |    
T  4857034 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattaaccaatcaaaatgattcatgacacatttatagttttcatca 4856935  T
Q  800 gccaatcaaaattgatcatgtc 821  Q
    ||||||||||||||||||||||    
T  4856934 gccaatcaaaattgatcatgtc 4856913  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 701 - 815
Target Start/End: Original strand, 27434713 - 27434827
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgag 800  Q
    |||||||||| |||  ||||| ||||| ||| || ||  ||| ||||||||||| |||||||||||| | ||||| |||||||| | || ||||||  |     
T  27434713 tcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaatcaagatggaccatgactcatttagttttcaccaa 27434812  T
Q  801 ccaatcaaaattgat 815  Q
    |||||||||||||||    
T  27434813 ccaatcaaaattgat 27434827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 769 - 819
Target Start/End: Complemental strand, 30890105 - 30890055
Alignment:
Q  769 aaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatg 819  Q
    |||| ||||||||||| | |||||| ||||| |||||||||||||||||||    
T  30890105 aaattgatcatgactcatttattttacatgatccaatcaaaattgatcatg 30890055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 835 - 892
Target Start/End: Original strand, 32681527 - 32681584
Alignment:
Q  835 ctatatatagataattcgtttttcattattttcatctacatcttcctcccataaaaaa 892  Q
    ||||||||||| ||||  ||||||||||||||||| |   ||||||||||||||||||    
T  32681527 ctatatatagacaatttatttttcattattttcatgtgtttcttcctcccataaaaaa 32681584  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 671 - 869
Target Start/End: Complemental strand, 7946631 - 7946432
Alignment:
Q  671 agtacacgtgacatcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcattta-ttttatattagccaatcta 769  Q
    |||||| |||||||||||  ||||||| | |||||||||| |||  ||||| ||||| ||| |  ||  ||| ||||| | |||| |||||||||||| |    
T  7946631 agtacatgtgacatcttcatattcttcatctcatttaatgttttcttatcatccaatcaaattaaattatgactcattcatttttttattagccaatcaa 7946532  T
Q  770 aatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatgannnnnnnncctatatatagataattcgtttttcattattttcat 869  Q
     ||| | |||||||| | || ||||||| | ||||||||||| ||||||||  |||        |||||||||||| |||| ||||||||||||||||||    
T  7946531 gatgaaccatgactcatttagttttcatcaaccaatcaaaatggatcatgttttgatttttttccctatatatagacaatttgtttttcattattttcat 7946432  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 683 - 819
Target Start/End: Original strand, 29493967 - 29494104
Alignment:
Q  683 atcttcgcattcttcttttcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttat-attagccaatctaaatggatcatga 781  Q
    |||||| |||||||| | | ||||||||||||  ||||| ||||| ||| || ||  ||| ||||| ||||| | ||||||||||| | ||| |||||||    
T  29493967 atcttcacattcttcatcttatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagccaatcaagatgaatcatga 29494066  T
Q  782 ctcttctatttttcatgagccaatcaaaattgatcatg 819  Q
    ||| | || ||||||| | |||||||||||||||||||    
T  29494067 ctcatttagttttcatcaaccaatcaaaattgatcatg 29494104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 744 - 824
Target Start/End: Complemental strand, 67260 - 67180
Alignment:
Q  744 tcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatg 824  Q
    ||||||||||| |||||||||||| |||||  | ||||| | | || ||||||  ||||||||||||||||||||||||||    
T  67260 tcatttattttttattagccaatcaaaatgatttatgacacatttagttttcaccagccaatcaaaattgatcatgtcatg 67180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 744 - 824
Target Start/End: Complemental strand, 75365 - 75285
Alignment:
Q  744 tcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatgtcatg 824  Q
    ||||||||||| |||||||||||| |||||  | ||||| | | || ||||||  ||||||||||||||||||||||||||    
T  75365 tcatttattttttattagccaatcaaaatgatttatgacacatttagttttcaccagccaatcaaaattgatcatgtcatg 75285  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 701 - 815
Target Start/End: Complemental strand, 52650 - 52536
Alignment:
Q  701 tcatttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgag 800  Q
    |||||||||| |||  ||||| ||||| ||| || ||  ||| ||||||||||| |||||||||||| | ||||| |||||||| | || ||||||  |     
T  52650 tcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaatcaagatggaccatgactcatttagttttcaccaa 52551  T
Q  801 ccaatcaaaattgat 815  Q
    |||||||||||||||    
T  52550 ccaatcaaaattgat 52536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 751 - 819
Target Start/End: Original strand, 18094 - 18162
Alignment:
Q  751 ttttatattagccaatctaaatggatcatgactcttctatttttcatgagccaatcaaaattgatcatg 819  Q
    ||||||||||||||||| | ||| | |||||||| | || ||||||| | |||||||||||||||||||    
T  18094 ttttatattagccaatcaagatgaaccatgactcatttagttttcatcaaccaatcaaaattgatcatg 18162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 839 - 891
Target Start/End: Complemental strand, 32109 - 32057
Alignment:
Q  839 atatagataattcgtttttcattattttcatctacatcttcctcccataaaaa 891  Q
    ||||||| ||||  |||||||||| ||||||||||||||||||||||| ||||    
T  32109 atatagacaatttttttttcattactttcatctacatcttcctcccatgaaaa 32057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 703 - 825
Target Start/End: Complemental strand, 17139 - 17020
Alignment:
Q  703 atttaatgcttttctatcaaccaataaaaatggatcttgaatcatttattttatattagccaatctaaatggatcatgactcttctatttttcatgagcc 802  Q
    |||||||| ||||  |||||||||| ||||| |||  ||| ||||||||||| ||||| |||||  |||| ||||||||||  | ||| ||| || || |    
T  17139 atttaatgttttttcatcaaccaatcaaaatagat--tgactcatttattttttattaaccaattaaaatagatcatgacttatttatattttattag-c 17043  T
Q  803 aatcaaaattgatcatgtcatga 825  Q
    ||||||||||||||||| |||||    
T  17042 aatcaaaattgatcatgacatga 17020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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