View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21073_high_2 (Length: 611)
Name: NF21073_high_2
Description: NF21073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21073_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 13968601 - 13969187
Alignment:
| Q |
1 |
gagaaacactataaatgaaacacaaacaacacnnnnnnnnngaagaaaggaaagagaggaatcaatcgtattcggagagcctttcatttc-aacgctgct |
99 |
Q |
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| T |
13968601 |
gagaaacactataaatgaaacacaaacaacacaaaaaaaaggacgaaaggaaagagaggaatcaatcgtattcggagagcctttcatttctaacgctgct |
13968700 |
T |
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| Q |
100 |
atatcgcgcaagcttgctattcccttctctctttcctttccatgcaaatttcattactctaacttttcatcttccaattttacgtaacaatcataaaaat |
199 |
Q |
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| T |
13968701 |
atatcgcgcaagcttgctattctcttctctctttcctttccatgcaaatttcattactctaacttttcatcttccaatttcacgtaaaattcataaaaat |
13968800 |
T |
|
| Q |
200 |
atatcaatttgatattgtaatattacatttacattcataattcgaagaaaatgagcgttatttcgcgtaacatttggcctgtttgcggtagtttatgttg |
299 |
Q |
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| T |
13968801 |
atatcaatttgatattgtaatattacatttacattcataattcgaagaaaatgagcgttatttcgcgtaacatttggcctgtttgcggtagtttatgttg |
13968900 |
T |
|
| Q |
300 |
tttttgtcctgcattgcgggaaagatcaagacatcctattaaacgttacaagaaattgcttgctgatatcttccctcgcacgccggtagaatcataataa |
399 |
Q |
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| T |
13968901 |
tttttgtcctgcattgcgggaaagatcaagacatcctattaaacgttacaagaaattgcttgctgatatcttccctcgcacgccggtagaataataataa |
13969000 |
T |
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| Q |
400 |
cnnnnnnnnnnncatttatgtaatataatttgtaattgtaatgttatttagagtgttggaaattataagcatgataatgataacgatgattatgatgatg |
499 |
Q |
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| T |
13969001 |
c--ttcttttttcatttat-aacaataatttgtaattttaatgtttattgtagttttgaaatttataatcatgatgatgata---atgacgatggtgatg |
13969094 |
T |
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| Q |
500 |
atcatgttgttgtaacaggaagaagaacctaatgatcgaaagatcagcaagttatgcgagtatgcatcgaaaaatcctcttcgtgttcctaag |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13969095 |
atcatgttgttgtaacaggaagaagaacctaatgatcgtaagatcagcaaattatgcgagtatgcatcgaaaaatcctcttcgtgttcctaag |
13969187 |
T |
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