View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21073_low_3 (Length: 436)

Name: NF21073_low_3
Description: NF21073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21073_low_3
NF21073_low_3
[»] chr3 (12 HSPs)
chr3 (79-376)||(37147918-37148231)
chr3 (1-86)||(37147779-37147864)
chr3 (360-418)||(37148244-37148302)
chr3 (315-376)||(24098288-24098350)
chr3 (306-376)||(13712354-13712425)
chr3 (368-411)||(37148578-37148621)
chr3 (315-376)||(3750591-3750653)
chr3 (316-376)||(1772012-1772073)
chr3 (316-376)||(7515393-7515454)
chr3 (316-376)||(26997191-26997252)
chr3 (320-376)||(29777537-29777594)
chr3 (316-376)||(31324479-31324540)
[»] chr4 (3 HSPs)
chr4 (316-381)||(21956411-21956477)
chr4 (316-376)||(34979474-34979535)
chr4 (319-376)||(40289348-40289406)
[»] scaffold0220 (1 HSPs)
scaffold0220 (316-376)||(21809-21870)
[»] chr8 (4 HSPs)
chr8 (316-376)||(22444598-22444659)
chr8 (317-376)||(6121900-6121960)
chr8 (316-376)||(29276614-29276675)
chr8 (316-376)||(44728103-44728164)
[»] chr5 (3 HSPs)
chr5 (316-376)||(27496172-27496233)
chr5 (316-376)||(42091989-42092050)
chr5 (316-376)||(6641790-6641850)
[»] chr2 (2 HSPs)
chr2 (316-376)||(45638054-45638115)
chr2 (320-376)||(5483194-5483251)
[»] chr1 (1 HSPs)
chr1 (339-418)||(24677012-24677091)
[»] chr7 (1 HSPs)
chr7 (311-376)||(37042966-37043032)
[»] scaffold0062 (1 HSPs)
scaffold0062 (316-376)||(11710-11771)
[»] scaffold0051 (1 HSPs)
scaffold0051 (316-376)||(60468-60529)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 79 - 376
Target Start/End: Original strand, 37147918 - 37148231
Alignment:
Q  79 ttgatttcaaagtcctta-taattttatttacaatttaatttaattgtttctgaagtattttaggatattatgttagat--------------tttagtt 163  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||    
T  37147918 ttgatttcaaagtcctaaataattttatttacaatttaatttaattgtttctgaagtattttaggatattatgttagatttgggtggaaagattttagtt 37148017  T
Q  164 tctagttctagtctttccttcaattctcttgattctcatgcgtgctactggaatggaattgtgaggaagataatggactgagaaagtttcgacggaacc- 262  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||  ||||||||||| ||||||||||||||||||||||     
T  37148018 tctagttctagtctttccttcaattctcctgattctcatgcgtgcttctggaatgaaattgtgctgaagataatgggctgagaaagtttcgacggaaccg 37148117  T
Q  263 gatgagttgaagnnnnnnnnngccaaaaactctaacaagtttaattataaacaaggccaaatacctctctgggtccttaagtttcatgtttgtaacggat 362  Q
    |  |||||||||         |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |||    
T  37148118 gcggagttgaagaaaaaaaaagccaaaaactctaacaagtttaattataaagaaggccaaataccaccctgggtccttaagtttcatgtttgtaacagat 37148217  T
Q  363 aggtcctttaagtt 376  Q
    ||||||||||||||    
T  37148218 aggtcctttaagtt 37148231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 37147864 - 37147779
Alignment:
Q  1 aaaagtaatagccagacccgaacattagagaatacagagcttcaggctatggttttcgtaatggattgataatcgctattgatttc 86  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37147864 aaaaataatagccagacccgaacattagagaatacagagcttcaggctatggttttcgtaatggattgataatcgctattaatttc 37147779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 37148244 - 37148302
Alignment:
Q  360 gataggtcctttaagttgttaaaagcttacaccgttacccttccagtcatcctccgtta 418  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37148244 gataggtcctttaagttgttaaaagcttacaccgttacccttccggtcatcctccgtta 37148302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 24098350 - 24098288
Alignment:
Q  315 aaggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||| ||||||||||||||||||||| |||||||| ||||||  | |||||||||||||||||    
T  24098350 aaggtcaaatacctctctgggtcctttaagtttcacgtttgtttcagataggtcctttaagtt 24098288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 13712425 - 13712354
Alignment:
Q  306 attataaacaaggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||| ||||||||||||||| |||  ||||||||| |||||||| ||||||  | |||||||||||||||||    
T  13712425 attaaaaacaaggccaaatatctccatgggtcctttaagtttcacgtttgtttcagataggtcctttaagtt 13712354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 37148621 - 37148578
Alignment:
Q  368 ctttaagttgttaaaagcttacaccgttacccttccagtcatcc 411  Q
    ||||||||||||||||||||| || ||||||||| |||||||||    
T  37148621 ctttaagttgttaaaagcttatactgttaccctttcagtcatcc 37148578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 376
Target Start/End: Original strand, 3750591 - 3750653
Alignment:
Q  315 aaggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    ||||||| ||||||| |||||||||| |||||||| ||||||  | |||||||||||||||||    
T  3750591 aaggccagatacctccctgggtcctttaagtttcacgtttgtttcagataggtcctttaagtt 3750653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 1772073 - 1772012
Alignment:
Q  316 aggccaaatacctctctgggtcc-ttaagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||||||| |||||||| |||||||||| ||||||  |  ||||||||||||||||    
T  1772073 aggccaaatacctcactgggtcctttaagtttcacgtttgtttcatataggtcctttaagtt 1772012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 7515393 - 7515454
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||||||| || ||||||| |||||||| ||||||  | |||||||||||||||||    
T  7515393 aggccaaatacctccctaggtcctttaagtttcacgtttgtttcagataggtcctttaagtt 7515454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 26997191 - 26997252
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||||||| || ||||||| |||||||||||||||  |  ||||||||||||||||    
T  26997191 aggccaaatacctccctaggtcctttaagtttcatgtttgtttcaaataggtcctttaagtt 26997252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 29777594 - 29777537
Alignment:
Q  320 caaatacctctctgggtcc-ttaagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    ||||||||||||||||||| |||||||||| ||||||  | |||||||| ||||||||    
T  29777594 caaatacctctctgggtcctttaagtttcacgtttgtttcagataggtcatttaagtt 29777537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 31324540 - 31324479
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||||||| || ||||||| |||||||| ||||||  | |||||||||||||||||    
T  31324540 aggccaaatacctcccttggtcctttaagtttcacgtttgtttcagataggtcctttaagtt 31324479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 21956477 - 21956411
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagttgttaa 381  Q
    |||||||||||||| ||| |||||| |||||||||||||||  ||||||||||||||||||| ||||    
T  21956477 aggccaaatacctccctgagtcctttaagtttcatgtttgtttcggataggtcctttaagtttttaa 21956411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 34979474 - 34979535
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||||||| |||||||||| |||||||| ||||||  | |||||||||||||||||    
T  34979474 aggccaaatacctccctgggtcctttaagtttcacgtttgtttcagataggtcctttaagtt 34979535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 40289348 - 40289406
Alignment:
Q  319 ccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    ||||||||||| |||||||||| |||||||||||||||  | ||||||| |||||||||    
T  40289348 ccaaatacctccctgggtcctttaagtttcatgtttgtttcagataggtactttaagtt 40289406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 21809 - 21870
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    ||||||||||||||||| ||||||| |||||||| ||||||  |||||||||||||||||||    
T  21809 aggccaaatacctctctaggtcctttaagtttcacgtttgtttcggataggtcctttaagtt 21870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 22444598 - 22444659
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||| ||||||||| |||||||||| |||||||| ||||||  |||||||||||||||||||    
T  22444598 aggcgaaatacctccctgggtcctttaagtttcacgtttgtttcggataggtcctttaagtt 22444659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 6121960 - 6121900
Alignment:
Q  317 ggccaaatacctctctgggtcc-ttaagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||||||||||||||| |||||||||| ||||||  | |||| ||||||||||||    
T  6121960 ggccaaatacctctctgggtcctttaagtttcacgtttgtttcagatatgtcctttaagtt 6121900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 29276614 - 29276675
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||||||| |||| | ||| |||||||||||||||  | |||||||||||||||||    
T  29276614 aggccaaatacctccctggattctttaagtttcatgtttgtttcagataggtcctttaagtt 29276675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 44728103 - 44728164
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    ||||||||||||||||  ||||||| |||||||||||||||  | ||||| |||||||||||    
T  44728103 aggccaaatacctctccaggtcctttaagtttcatgtttgtttcagatagatcctttaagtt 44728164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 27496233 - 27496172
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||||||| |||||||||| |||||||| ||||||  | |||||||||||||||||    
T  27496233 aggccaaatacctccctgggtcctttaagtttcacgtttgtttcagataggtcctttaagtt 27496172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 42091989 - 42092050
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||||||| |||||||||| |||||||| ||||||  | |||||||||||||||||    
T  42091989 aggccaaatacctccctgggtcctttaagtttcacgtttgtttcagataggtcctttaagtt 42092050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 6641790 - 6641850
Alignment:
Q  316 aggccaaatacctctctgggtccttaagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||| ||| | |||||||||||||||||||||||  | ||||| |||||||||||    
T  6641790 aggccaaatatctccccgggtccttaagtttcatgtttgtttcagatagatcctttaagtt 6641850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 45638054 - 45638115
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||| ||| |||||||||| |||||||||||||||  | |||||||||||||||||    
T  45638054 aggccaaatatctccctgggtcctttaagtttcatgtttgtttcagataggtcctttaagtt 45638115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 5483251 - 5483194
Alignment:
Q  320 caaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||||||| |||||| |||||||| ||||||  | |||||||||||||||||    
T  5483251 caaatacctctctgagtcctttaagtttcacgtttgtttcagataggtcctttaagtt 5483194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 24677091 - 24677012
Alignment:
Q  339 ttaagtttcatgtttgtaacggataggtcctttaagttgttaaaagcttacaccgttacccttccagtcatcctccgtta 418  Q
    |||||||||  |||||||  ||||  |||||||||||| |||||||||||  ||||||||||| |||||| ||| |||||    
T  24677091 ttaagtttcgcgtttgtactggatcagtcctttaagttattaaaagcttatgccgttaccctttcagtcaaccttcgtta 24677012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 37042966 - 37043032
Alignment:
Q  311 aaacaaggccaaatacctctctgggtcc-ttaagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||| || |||||||||||||||||| |||||||||||||||||   |||||| | |||||||||    
T  37042966 aaacaatgcgaaatacctctctgggtcctttaagtttcatgtttgtttaggatagatgctttaagtt 37043032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 11710 - 11771
Alignment:
Q  316 aggccaaatacctctctgggtcctt-aagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||||||| |||| ||||| |||||||||||||||  | ||||| |||||||||||    
T  11710 aggccaaatacctcactggatcctttaagtttcatgtttgtttcagatagatcctttaagtt 11771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 60468 - 60529
Alignment:
Q  316 aggccaaatacctctctgggtcc-ttaagtttcatgtttgtaacggataggtcctttaagtt 376  Q
    |||||||||||||| |||||||| |||||||||| ||||||  | ||||||| |||||||||    
T  60468 aggccaaatacctccctgggtcctttaagtttcacgtttgtttcagataggtactttaagtt 60529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University