View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21073_low_5 (Length: 427)
Name: NF21073_low_5
Description: NF21073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21073_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 31790107 - 31789704
Alignment:
| Q |
19 |
gtttctaccatgaatatccacaatatatgatgccaatgcaacaacaaaacaacaatttttacagtttaacatcaaatatttccaccacagcagcaacaac |
118 |
Q |
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| T |
31790107 |
gtttctaccatgaatatccacaatatatgatgccaatgcaacaacaaaacaacaatttttacagtttcacatcaaatatttccaccacagcagcaacaac |
31790008 |
T |
|
| Q |
119 |
attaggcagtgaagtttcactatcatcagtggcagcagcagcagaaaatcacagagatcaagttctgatgagtaatccccctccttcagatgcaattcca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31790007 |
attaggcagtgaagtttcactatcatcagtggcagcagcagcagaaaatcacagagatcaagttctgatgagtaatccccctccttcagatgcaattcca |
31789908 |
T |
|
| Q |
219 |
tttattgacttccttggagtaggagccacatgatcaaagttataaactaatcaaaaagctgcaatgcaaccc-nnnnnnnncccattgaagctcctcaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31789907 |
tttattgacttccttggagtaggagccacatgatcaaagttataaactaatcaaaaagctgcaatgcaacccttttttttttccattgaagctcctcaat |
31789808 |
T |
|
| Q |
318 |
ataggtgtggtccaacattacctaaaaaccattcgaggtaaacagaaaggatagttgctctactttggtcactgtgttacttgcgtcatttctgttcatc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31789807 |
ataggtgtggtccaacattacctaaaaaccattcgaggtaaacagaaaggatagttgctctactttggtcactgtgttacttgcgtcatttctgttcata |
31789708 |
T |
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| Q |
418 |
tcac |
421 |
Q |
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|||| |
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| T |
31789707 |
tcac |
31789704 |
T |
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