View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21073_low_6 (Length: 290)
Name: NF21073_low_6
Description: NF21073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21073_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 29435213 - 29434948
Alignment:
| Q |
7 |
ggacatcatcatgattccctgcatgaacatccaatgaaatatgaaaaattagcacatgtggatcatgtggtaggtttcaagtagagttttcctatccatt |
106 |
Q |
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| T |
29435213 |
ggacatcatcatgattccctgcatgaacaaccaatgaaatatgaaaaattaacacgtgtggatcatgtggtaggtttcaagtagagttttcctatccatt |
29435114 |
T |
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| Q |
107 |
tgttcttacaatgattccagctcctgtaacgattcccataaggaaatttggaacaagcgaagctacaaccatcatgatactctcgatcactgagaggcat |
206 |
Q |
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| T |
29435113 |
tgttcttacaatgattccagctcctgtaacgattcccataaggaaatttggaacaagcgaagctacaaccatcatgatactctcgatcactgagaggcat |
29435014 |
T |
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| Q |
207 |
ccatagacgttaagagtgaaaaacacatagtgaatgaatcctggcctgaatttcaccatgctatat |
272 |
Q |
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| T |
29435013 |
ccatagacgttaagagtgaaaaacacatagtgaatgaatcctggcctgaatttcaccatgttatat |
29434948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 29468426 - 29468171
Alignment:
| Q |
10 |
catcatcatgattccctgcatgaacatccaatgaaatatgaaaaattagcacatgtggatcatgtggtaggtttcaagtagagttttcctatccatttgt |
109 |
Q |
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| T |
29468426 |
catcatcatgattccctgcatgaataac-aat---atatgacaaattaacacatggggatcatgtggtaggtttcaagtagaattttcg---ccatttgt |
29468334 |
T |
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| Q |
110 |
tcttacaatgattccagctcctgtaacgattcccataaggaaatttggaacaagcgaagctacaaccatcatgatactctcgatcactgagaggcatcca |
209 |
Q |
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| T |
29468333 |
tcttacaatgattccagctcctgtaatgattcccatgagaaaatttggaacaagtgcagctacaaccatcatgagactctcaatcactgagatgcatccg |
29468234 |
T |
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| Q |
210 |
tagacgttaagagtgaaaaacacatagtgaatgaatcctggcctgaatttcaccatgctatat |
272 |
Q |
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| T |
29468233 |
tagatgttaatagtgaaaaacgcatagtgaatgaatccgggtctgaatttcaccatgttatat |
29468171 |
T |
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