View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21074_high_13 (Length: 404)
Name: NF21074_high_13
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21074_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 32122940 - 32123330
Alignment:
| Q |
19 |
cattcttcccttttcccttctttctagacccaaaacatgggcaacgacccatcacctctaatcactagaattcagcacaaaaacaaaactttttcttgtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32122940 |
cattcttcccttttcccttctttctagacccaaaacatgggcaacgacccatcacctctaatcactagaattcagcacaaaaacaaaactttttcttgtc |
32123039 |
T |
|
| Q |
119 |
ttattatgaaacaatgccacaaatataaaaccttgaagataccaaactctgatcagaggttaaaacatcattgatggtgttgaatgcgacattgtaacaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32123040 |
ttattatgaaacaatgccacaaatataaaaccttgaagataccaaactctgatcagaggttaaaacatcattgatggtgttgaatgcgacattgtaataa |
32123139 |
T |
|
| Q |
219 |
cgcattatcattaccataacaatgtatgatattcatatgtgtttgtgttttggttaacgtggttgtttgtaaaaaagagaagaaattgtagattatgatg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32123140 |
cgcattatcattaccataacaatgtatgatattcatatgtgtttgtgttttggttaacgtggttgtttgtaaaaaagagaagaaattgtagattatgatg |
32123239 |
T |
|
| Q |
319 |
tgattatttgtagaaatagcaaaatttttt---------------ggatttgagaaaatatttaggattaaattaacactgatgatgatgt |
394 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32123240 |
tgattatttgtagaaatagcaaatttttttggatttggataacaaggatttgagaaaatatttaggattaaattaacactgatgatgatgt |
32123330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University