View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21074_high_2 (Length: 959)

Name: NF21074_high_2
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21074_high_2
NF21074_high_2
[»] chr7 (3 HSPs)
chr7 (1-942)||(34889538-34890484)
chr7 (386-490)||(12163666-12163771)
chr7 (417-574)||(26562956-26563113)
[»] chr2 (8 HSPs)
chr2 (416-574)||(40800161-40800319)
chr2 (405-574)||(17560790-17560960)
chr2 (405-478)||(41501064-41501137)
chr2 (405-490)||(41969382-41969467)
chr2 (405-574)||(13779003-13779163)
chr2 (386-463)||(141022-141100)
chr2 (405-489)||(16907919-16908004)
chr2 (405-475)||(32071356-32071428)
[»] chr3 (7 HSPs)
chr3 (381-574)||(5528271-5528465)
chr3 (393-483)||(27158286-27158377)
chr3 (405-501)||(25410379-25410474)
chr3 (381-502)||(8868369-8868491)
chr3 (518-574)||(38944536-38944592)
chr3 (386-475)||(35314118-35314206)
chr3 (381-502)||(10896105-10896227)
[»] chr1 (4 HSPs)
chr1 (386-570)||(39003161-39003350)
chr1 (408-490)||(1485407-1485489)
chr1 (421-574)||(5696723-5696875)
chr1 (393-474)||(676087-676168)
[»] chr4 (3 HSPs)
chr4 (417-498)||(53402529-53402610)
chr4 (406-480)||(4826199-4826273)
chr4 (404-490)||(53618814-53618902)
[»] chr6 (3 HSPs)
chr6 (393-499)||(11714186-11714293)
chr6 (433-542)||(30655818-30655927)
chr6 (418-502)||(7810118-7810200)
[»] chr5 (2 HSPs)
chr5 (405-558)||(34443312-34443466)
chr5 (518-574)||(37496756-37496812)
[»] scaffold0606 (1 HSPs)
scaffold0606 (408-499)||(1962-2052)
[»] chr8 (1 HSPs)
chr8 (428-490)||(30678428-30678490)


Alignment Details
Target: chr7 (Bit Score: 779; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 779; E-Value: 0
Query Start/End: Original strand, 1 - 942
Target Start/End: Original strand, 34889538 - 34890484
Alignment:
Q  1 gccctgtggtttttcatcatagcatggtgatcttgcatatgtactttgtactgaacaacattaattccaaaactcttacctgctggctagttgtgctcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34889538 gccctgtggtttttcatcatagcatggtgatcttgcatatgtactttgtactgaacaacattaattccaaaactcttacctgctggctagttgtgctcct 34889637  T
Q  101 tcaattattgttgttttgtttttttaccccaaggttaaatacgacatcactgactacnnnnnnnnnnnnnnnnn--atctgttgggggtcttctgaattt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||    
T  34889638 tcaattattgttgttttgtttttttaccccaaggttaaatacgacatcactgactactttttttttttttttttttatctgttgggggtcttctgaattt 34889737  T
Q  199 acttggccaaaataaattgttgctattattattattacaattacaattaaaaacatttgtaagaaagaatttgcatgtgaggtaaaaaatgatatatcgg 298  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  34889738 acttggccaaaataaattgttgctattattactattacaattacaattaaaaacatttgtaagaaagaatttgcatgtgaggtaaaaactgatatgtcgg 34889837  T
Q  299 acaacgacggatgatggcaacggtggcagtgcggtgctccgacacggcgatggtgcgatttctacgatggaaagaagggtgcc---aggaacgttaccac 395  Q
      || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||   ||||||||||||||    
T  34889838 gtaaagacggatgatggcaacggtggtagtgcggtgctccgacacggcgatggtgcgatctccacgatggaacgaagggtgcctgcaggaacgttaccac 34889937  T
Q  396 tccaacactaagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttatacagga 495  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34889938 tccaacactaagtcagtgtaggaaatgaggttgaatgtgtacaagcgtgtgggaaaagaatcataccttgagggtgatgcggaatcacccttatacagga 34890037  T
Q  496 gaaggagatgacgacggattctgtgaaatgtggtgcctcatcaaggagccgttggaggccacaagtacggtgcaggaaggctgggatatgcttgagtctg 595  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  34890038 gaaggagacgacaacggattctgtgaaatgtggtgcctcatcaaggagccgttggaggccacaagtacggtgcaggaaggctgggacatgcttgagtccg 34890137  T
Q  596 gtcatgtgcatggaaactagcgtgttcaccctagccataatgtcttggtccgatagttccatattcacgtgtctttataggattggttttctagccggtc 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34890138 gtcatgtgcatggaaactagcgtgttcaccctagccataatgtcttggtccgatagttccgtattcacgtgtctttataggattggttttctagccggtc 34890237  T
Q  696 aagaccaaaaaccatagagtaaatagggaataaaaaacaatagtactttattatcctgctattgttatcattgaatatagtagtaaatagcaaacaccaa 795  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34890238 aagaccaaaaaccatagagtaaatagggaataaaaaacaataatactttattatcctgctattgttatcattgaatatagtagtaaatagcaaacaccaa 34890337  T
Q  796 caaatgtagctaaagagaactctttaagttgatccatgaggggaatatatcttagtaatttgcagtttggtcaaaaagaaatataagttttcttaaatat 895  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34890338 caaatgtagctaaagagaactctttaagttgatccatgagggaaatatatcttagtaattcgcagtttggtcaaaaagaaatataagttttcttaaatat 34890437  T
Q  896 tgttgccatgaataatagaaattggtgctttgaattgattcaatcgt 942  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||    
T  34890438 tgttgccgtcaataatagaaattggtgctttgaattgattcaatcgt 34890484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 386 - 490
Target Start/End: Complemental strand, 12163771 - 12163666
Alignment:
Q  386 acgttaccactccaacactaa-gtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacc 484  Q
    |||||| ||||||||| || | || |||||| |||||| ||||||||||||||||   ||||||||| ||||| || |||||||||||||||||||| ||    
T  12163771 acgttagcactccaacgctcatgttagtgtaggaaatggggttgaatgtgtaaaattatgtgggaaatgaatcgtaacttgagggtgacgcggaatcgcc 12163672  T
Q  485 cttata 490  Q
    ||||||    
T  12163671 cttata 12163666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 574
Target Start/End: Original strand, 26562956 - 26563113
Alignment:
Q  417 gaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttatacaggagaaggagatgacgacggattc 516  Q
    ||||||||||| |||||||||||| |||| |||||  |||| |||||||| ||||||||| |||||| |||| | |||| || |||  |   |||  |||    
T  26562956 gaaatgaggttaaatgtgtaaaagtgtgtaggaaataaatcgtaccttgaaggtgacgcgaaatcactcttagataggataaagaggcgctaacgacttc 26563055  T
Q  517 tgtgaaatgtggtgcctcatcaaggagccgttggaggccacaagtacggtgcaggaag 574  Q
    |||||||||  |  |||||||| ||||| ||||||||||||| ||| | |||||||||    
T  26563056 tgtgaaatgcagcacctcatcagggagctgttggaggccacatgtatgatgcaggaag 26563113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 416 - 574
Target Start/End: Original strand, 40800161 - 40800319
Alignment:
Q  416 agaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttatacaggagaaggagatgacgacggatt 515  Q
    |||||||| ||||| |||||||||| |||  ||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||   |||  ||    
T  40800161 agaaatgatgttgattgtgtaaaagtgtggaggaaatgaatcgtaccttgagggtgacgcgaaatcacccttatataggagaaggagatgctaacgactt 40800260  T
Q  516 ctgtgaaatgtggtgcctcatcaaggagccgttggaggccacaagtacggtgcaggaag 574  Q
    | ||||||||||||| || ||||  ||| ||||||| |||||| |||||||||||||||    
T  40800261 ccgtgaaatgtggtgtcttatcagtgagtcgttggaagccacatgtacggtgcaggaag 40800319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 405 - 574
Target Start/End: Original strand, 17560790 - 17560960
Alignment:
Q  405 aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaa-gaatcataccttgagggtgacgcggaatcacccttatacaggagaaggaga 503  Q
    ||||||||||| ||||||||||||||||||||| |  |||||| |||| ||||  ||||||||||||||||| |||||||||||||| |||||||||||     
T  17560790 aagtcagtgtaggaaatgaggttgaatgtgtaagaatgtgtggaaaaatgaattgtaccttgagggtgacgcagaatcacccttatataggagaaggagg 17560889  T
Q  504 tgacgacggattctgtgaaatgtggtgcctcatcaaggagccgttggaggccacaagtacggtgcaggaag 574  Q
     |   ||  ||||  ||||| | || |||||||||  ||||||||||||||||   |||||||||||||||    
T  17560890 cgctaacaaattccatgaaacgcggagcctcatcagagagccgttggaggccatgtgtacggtgcaggaag 17560960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 405 - 478
Target Start/End: Complemental strand, 41501137 - 41501064
Alignment:
Q  405 aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcgga 478  Q
    ||||||||||| ||||||||||| |||||||||||  |||||||||| ||||| ||||||||||||||||||||    
T  41501137 aagtcagtgtaggaaatgaggtttaatgtgtaaaaaagtgtgggaaatgaatcgtaccttgagggtgacgcgga 41501064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 405 - 490
Target Start/End: Original strand, 41969382 - 41969467
Alignment:
Q  405 aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaaga-atcataccttgagggtgacgcggaatcacccttata 490  Q
    |||||||||||||||||||||||||||| ||||||  |||||| |||| | ||| |||||||||||||||||| | |||||||||||    
T  41969382 aagtcagtgtaagaaatgaggttgaatgggtaaaa-agtgtggaaaaatatatcgtaccttgagggtgacgcgaagtcacccttata 41969467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 574
Target Start/End: Complemental strand, 13779163 - 13779003
Alignment:
Q  405 aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttatacaggagaaggagat 504  Q
    |||| |||||||||||||||||||||||||||||||  ||||||||| ||||  |||      ||||||   |||||||||||||||||||| |||   |    
T  13779163 aagttagtgtaagaaatgaggttgaatgtgtaaaagtttgtgggaaatgaattgtac------ggtgacatagaatcacccttatacaggaggaggcact 13779070  T
Q  505 gacgacggattctgtgaaatgtggtgcctcatcaaggagccgttggaggccacaagtacggtgcaggaag 574  Q
        ||||| ||  |||||||  | ||||| |||||||||| ||||||| |||| |||||||||||||||    
T  13779069 ---aacggaatccatgaaatgcagagcctcgtcaaggagccattggaggtcacatgtacggtgcaggaag 13779003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 386 - 463
Target Start/End: Complemental strand, 141100 - 141022
Alignment:
Q  386 acgttaccactccaacact-aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtggga-aaagaatcatacct 463  Q
    |||||| |||||||||||| |||||||| ||||||| ||||||||||||||||||  |||||||| || |||||||||||    
T  141100 acgttaacactccaacactcaagtcagtataagaaacgaggttgaatgtgtaaaa-agtgtgggataatgaatcatacct 141022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 489
Target Start/End: Original strand, 16907919 - 16908004
Alignment:
Q  405 aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttga-gggtgacgcggaatcacccttat 489  Q
    |||||| ||||  ||||||||||||||||||||||| ||| |||||| ||||| ||| || | |||||||||  ||||||| ||||    
T  16907919 aagtcattgtagaaaatgaggttgaatgtgtaaaagtgtgcgggaaatgaatcgtacgtttatgggtgacgcataatcacctttat 16908004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 475
Target Start/End: Complemental strand, 32071428 - 32071356
Alignment:
Q  405 aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaa--gaatcataccttgagggtgacgc 475  Q
    |||| ||||||  ||||||||||||||||||||||  || | ||||||  ||||||||||||||||| |||||    
T  32071428 aagttagtgtataaaatgaggttgaatgtgtaaaaatgtataggaaaaatgaatcataccttgagggcgacgc 32071356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 3e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 381 - 574
Target Start/End: Complemental strand, 5528465 - 5528271
Alignment:
Q  381 caggaacgttaccactccaacact-aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaa 479  Q
    |||| |||||| || ||||||||  ||||||| ||| |||||||||||||||||||||||| ||||| ||||  |||| ||||||||||||||||| |||    
T  5528465 caggcacgttagcattccaacacccaagtcagagtaggaaatgaggttgaatgtgtaaaagtgtgtgagaaataaatcgtaccttgagggtgacgcagaa 5528366  T
Q  480 tcacccttatacaggagaaggagatgacgacggattctgtgaaatgtggtgcctcatcaaggagccgttggaggccacaagtacggtgcaggaag 574  Q
    ||||||||||| |||||||||||  | | ||||  | ||||| ||| || || |||| | ||||| |||||||||||   |||||||||||||||    
T  5528365 tcacccttatataggagaaggaggcgccaacggtctttgtgagatgcggcgcttcattagggagctgttggaggccatgtgtacggtgcaggaag 5528271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 393 - 483
Target Start/End: Original strand, 27158286 - 27158377
Alignment:
Q  393 cactccaacact-aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcac 483  Q
    |||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||| ||||  ||||||||||||||||  |||||||    
T  27158286 cactccaacacttaagtcagtgtacgaaataaggttgaatgtgtaaaagtgtgtgggaaatgaattgtaccttgagggtgacgttgaatcac 27158377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 405 - 501
Target Start/End: Complemental strand, 25410474 - 25410379
Alignment:
Q  405 aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttatacaggagaagga 501  Q
    ||||||||||| |||||||| ||||||||||||||   ||||||||| ||||| || || |||||||||| ||||||| ||||||| | ||||||||    
T  25410474 aagtcagtgtaggaaatgagattgaatgtgtaaaa-tatgtgggaaatgaatcgtatctggagggtgacgtggaatcatccttatataagagaagga 25410379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 381 - 502
Target Start/End: Original strand, 8868369 - 8868491
Alignment:
Q  381 caggaacgttaccactccaacact-aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaa 479  Q
    |||| |||||| |||||||||||| |||| |||||| |||||||||| |||||||| || | ||| || ||| | ||| ||||||| ||| |||||  ||    
T  8868369 caggcacgttagcactccaacactcaagttagtgtaggaaatgaggtcgaatgtgttaaggtgtgcggaaaatggatcgtaccttgcgggcgacgcaaaa 8868468  T
Q  480 tcacccttatacaggagaaggag 502  Q
    | ||||||||  |||||||||||    
T  8868469 taacccttatgtaggagaaggag 8868491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 518 - 574
Target Start/End: Complemental strand, 38944592 - 38944536
Alignment:
Q  518 gtgaaatgtggtgcctcatcaaggagccgttggaggccacaagtacggtgcaggaag 574  Q
    |||||||||| |||||||||| |||  |||||||||||||| ||| |||||||||||    
T  38944592 gtgaaatgtgatgcctcatcagggaatcgttggaggccacatgtatggtgcaggaag 38944536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 35314206 - 35314118
Alignment:
Q  386 acgttaccactccaacact-aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgc 475  Q
    |||||| ||||||||| || ||||||||  | |||||||| ||||||||  ||||  |||||||||| ||||| |||||||||||||||||    
T  35314206 acgttagcactccaacgctcaagtcagt--aggaaatgagattgaatgtacaaaaatgtgtgggaaatgaatcgtaccttgagggtgacgc 35314118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 381 - 502
Target Start/End: Original strand, 10896105 - 10896227
Alignment:
Q  381 caggaacgttaccactccaacact-aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaa 479  Q
    |||| |||||| ||||||||| || |||| ||||||  ||||||||| ||| |||| || | |||  | ||| ||||| ||||||||||| ||||| |||    
T  10896105 caggcacgttagcactccaacgctcaagttagtgtagtaaatgaggtcgaaagtgttaaggtgtgcagaaaatgaatcgtaccttgagggcgacgcagaa 10896204  T
Q  480 tcacccttatacaggagaaggag 502  Q
    | ||||||||  |||||||||||    
T  10896205 taacccttatgtaggagaaggag 10896227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 386 - 570
Target Start/End: Original strand, 39003161 - 39003350
Alignment:
Q  386 acgttaccactccaacact-aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacc 484  Q
    |||||| || ||||||||| || |||||||| ||||||| |||||||||||||||| ||||||||||  |||| |||||||||||||| |||||||||||    
T  39003161 acgttagcagtccaacactcaaatcagtgtaggaaatgaagttgaatgtgtaaaagtgtgtgggaaattaatcgtaccttgagggtgatgcggaatcacc 39003260  T
Q  485 cttataca----ggagaaggagatgacgacggattctgtgaaatgtggtgcctcatcaaggagccgttggaggccacaagtacggtgcag 570  Q
    |||||| |     ||| ||||| ||   ||   ||||| |||||| |||||||||| | |||||||||||||| |||| |||||||||||    
T  39003261 cttatataagatcgaggaggaggtgctaacatcttctgcgaaatgcggtgcctcattagggagccgttggagggcacatgtacggtgcag 39003350  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 408 - 490
Target Start/End: Original strand, 1485407 - 1485489
Alignment:
Q  408 tcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttata 490  Q
    |||||||| ||| |||| | ||||||||||||  ||| |||||| |||||||||||||||||||||||||||||| |||||||    
T  1485407 tcagtgtaggaattgagatggaatgtgtaaaaatgtgagggaaatgaatcataccttgagggtgacgcggaatcatccttata 1485489  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 574
Target Start/End: Complemental strand, 5696875 - 5696723
Alignment:
Q  421 tgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttatacaggagaaggagatgacgacggattctgtg 520  Q
    |||||||||||||| ||| | || ||||||| ||||| ||||||||||||||||| ||||| |||||||| ||| | |||||  |   ||  ||| ||||    
T  5696875 tgaggttgaatgtgcaaacgtgt-tgggaaatgaatcgtaccttgagggtgacgcagaatcgcccttatatagggggaggaggcgctaacaaattatgtg 5696777  T
Q  521 aaatgtggtgcctcatcaaggagccgttggaggccacaagtacggtgcaggaag 574  Q
    ||||| || ||||||||   |||||||||||||||||| | ||| |||||||||    
T  5696776 aaatgcggcgcctcatccgagagccgttggaggccacatgaacgatgcaggaag 5696723  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 393 - 474
Target Start/End: Complemental strand, 676168 - 676087
Alignment:
Q  393 cactccaacact-aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacg 474  Q
    |||||||||| | ||||||||||| ||||| |||| |||||||||||| |||||| |||| ||||| |||||| |||||||||    
T  676168 cactccaacattcaagtcagtgtaggaaataaggtcgaatgtgtaaaaccgtgtgagaaatgaatcttacctt-agggtgacg 676087  T

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Target: chr4 (Bit Score: 58; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 417 - 498
Target Start/End: Original strand, 53402529 - 53402610
Alignment:
Q  417 gaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttatacaggagaa 498  Q
    ||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||    
T  53402529 gaaatgaggatgaatgtgtaaaagtgtgtgggaaatgaatcgtaccttgagggtgacgcgaaatcacccttatataggagaa 53402610  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 406 - 480
Target Start/End: Original strand, 4826199 - 4826273
Alignment:
Q  406 agtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaat 480  Q
    ||||||||||||||||||| |||| || ||||||| |||||||||| ||||| ||| |||||| |||||||||||    
T  4826199 agtcagtgtaagaaatgagattgagtgggtaaaagtgtgtgggaaatgaatcgtactttgaggatgacgcggaat 4826273  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 490
Target Start/End: Original strand, 53618814 - 53618902
Alignment:
Q  404 taagtcagtgtaagaaatgaggttgaatgtg--taaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttata 490  Q
    |||||||||||||||||||||||||||||||   ||||    |||| ||| ||||| |||||||||||||||| ||| ||||| |||||    
T  53618814 taagtcagtgtaagaaatgaggttgaatgtgaaaaaaaaaacgtggaaaatgaatcgtaccttgagggtgacgtggagtcaccattata 53618902  T

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Target: chr6 (Bit Score: 56; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 393 - 499
Target Start/End: Original strand, 11714186 - 11714293
Alignment:
Q  393 cactccaacact-aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttatac 491  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||||  || ||||||| ||||  |||||||||||||||| ||| |||||||||||     
T  11714186 cactccaacactcaagtctgtgtaggaaatgaggttgaatgtgtaaaaatgtatgggaaatgaattgtaccttgagggtgacgtggagtcacccttatat 11714285  T
Q  492 aggagaag 499  Q
    ||||||||    
T  11714286 aggagaag 11714293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 433 - 542
Target Start/End: Original strand, 30655818 - 30655927
Alignment:
Q  433 tgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttatacaggagaaggagatgacgacggattctgtgaaatgtggtgcc 532  Q
    ||||||||||| ||||||| ||||  |||||||||||||| ||||||||||||||||| |  |||||||||||   | | |||| |||||||| || |||    
T  30655818 tgtaaaagcgtttgggaaatgaattgtaccttgagggtgatgcggaatcacccttatatacaagaaggagatgctaaagaattccgtgaaatgcggcgcc 30655917  T
Q  533 tcatcaagga 542  Q
    ||||||||||    
T  30655918 tcatcaagga 30655927  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 502
Target Start/End: Complemental strand, 7810200 - 7810118
Alignment:
Q  418 aaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttatacaggagaaggag 502  Q
    |||||| ||||||||||||||||  |||| |||| |||||||||||| |||||||| |||| ||||||||| | |||||||||||    
T  7810200 aaatgaagttgaatgtgtaaaag--tgtgcgaaatgaatcataccttcagggtgactcggagtcacccttacataggagaaggag 7810118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 405 - 558
Target Start/End: Original strand, 34443312 - 34443466
Alignment:
Q  405 aagtcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaa--gaatcataccttgagggtgacgcggaatcacccttatacaggagaaggag 502  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||||   |||  ||||||||||||||||| || || |||||||||||   ||||||    
T  34443312 aagtcagtgtaggaaatgaagttgaatgtgtaaaagtgtgtgggaaaatgaaattgtaccttgagggtgacgcagagtcgcccttatacagagaaaggag 34443411  T
Q  503 atgacgacggattctgtgaaatgtggtgcctcatcaaggagccgttggaggccaca 558  Q
          || | ||| ||||||||||| |||||||||||| ||||||||||||||||    
T  34443412 gctctaactgcttccgtgaaatgtggagcctcatcaagg-gccgttggaggccaca 34443466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 518 - 574
Target Start/End: Original strand, 37496756 - 37496812
Alignment:
Q  518 gtgaaatgtggtgcctcatcaaggagccgttggaggccacaagtacggtgcaggaag 574  Q
    ||||||||||||||||||||| |||  | |||||||||||| |||||||||||||||    
T  37496756 gtgaaatgtggtgcctcatcagggaatcattggaggccacatgtacggtgcaggaag 37496812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 408 - 499
Target Start/End: Complemental strand, 2052 - 1962
Alignment:
Q  408 tcagtgtaagaaatgaggttgaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttatacaggagaag 499  Q
    |||||||| ||||||| |||| | | ||||||| |||||| ||| ||||| |||||||||||||| || |||||||||||||| ||||||||    
T  2052 tcagtgtaggaaatgacgttggaagagtaaaagtgtgtgg-aaatgaatcgtaccttgagggtgatgcagaatcacccttatataggagaag 1962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 428 - 490
Target Start/End: Complemental strand, 30678490 - 30678428
Alignment:
Q  428 gaatgtgtaaaagcgtgtgggaaaagaatcataccttgagggtgacgcggaatcacccttata 490  Q
    |||||||||||||   |||| ||| ||||  |||||||||||||| |||||||||||||||||    
T  30678490 gaatgtgtaaaagtacgtggaaaatgaattctaccttgagggtgatgcggaatcacccttata 30678428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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