View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21074_high_23 (Length: 293)

Name: NF21074_high_23
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21074_high_23
NF21074_high_23
[»] chr1 (3 HSPs)
chr1 (18-286)||(41431413-41431680)
chr1 (18-102)||(41441970-41442054)
chr1 (33-101)||(41453252-41453320)
[»] chr2 (3 HSPs)
chr2 (18-101)||(33363235-33363318)
chr2 (18-101)||(33369666-33369749)
chr2 (189-238)||(33369859-33369908)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 41431413 - 41431680
Alignment:
Q  18 aaaaagtccaggaacagtggaaaattttggaggagcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatatcacatttagtattcaa 117  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41431413 aaaaggtccaggaacagtggaaaatgttggaggagcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatatcacatttagtattcaa 41431512  T
Q  118 tatactttttggacctgatgaactttattaatgcgtatatcccgttcatagttgattttttctaccaaatcccgttcatagctattgaaatggttggtct 217  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41431513 tatactttttggacctgatgaactttattaatgcgtatat-ccgatcatagttgattttttctaccaaatcccgttcatagctattgaaatggttggtct 41431611  T
Q  218 agttcctgtcttatcgaaagggtgttggatttctttacaatacatccttattgaatagtgccacaggtt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41431612 agttcctgtcttatcgaaagggtgttggatttctttacaatacatccttattgaatagtgccataggtt 41431680  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 41441970 - 41442054
Alignment:
Q  18 aaaaagtccaggaacagtggaaaattttggaggagcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatatc 102  Q
    ||||| |||||||| ||||||  ||| ||||| |||||||||| || ||||||||||||| ||| || |||||||||||||||||    
T  41441970 aaaaaatccaggaagagtggaggattctggagaagcatttgccgggtgagtttagtattcgtgacacaaaatagcttgtaatatc 41442054  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 41453252 - 41453320
Alignment:
Q  33 agtggaaaattttggaggagcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatat 101  Q
    ||||||| |||||| |  ||||||||||||| |||||| |||||| | |||||||||||||||||||||    
T  41453252 agtggaagattttgaaaaagcatttgccaggtgagtttggtattctttatactaaatagcttgtaatat 41453320  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 33363235 - 33363318
Alignment:
Q  18 aaaaagtccaggaacagtggaaaattttggaggagcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatat 101  Q
    ||||| |||||||| ||||||  |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  33363235 aaaaaatccaggaagagtggaggattttggaggagcatttgccgggtgagtttagtattcctgatactaaatagcttgtaatat 33363318  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 33369666 - 33369749
Alignment:
Q  18 aaaaagtccaggaacagtggaaaattttggaggagcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatat 101  Q
    ||||| |||||||| ||||||| ||||||||||||||||| || |||||||||||||||| || | ||||||||||||||||||    
T  33369666 aaaaaatccaggaagagtggaagattttggaggagcattttccgggcgagtttagtattcttgttgctaaatagcttgtaatat 33369749  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 33369859 - 33369908
Alignment:
Q  189 ccgttcatagctattgaaatggttggtctagttcctgtcttatcgaaagg 238  Q
    |||||||| |||||||||||||| |||||||||| |||||||||| ||||    
T  33369859 ccgttcattgctattgaaatggtaggtctagttcatgtcttatcggaagg 33369908  T

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