View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21074_high_8 (Length: 466)
Name: NF21074_high_8
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21074_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 10876271 - 10876515
Alignment:
| Q |
1 |
taggacggaaattagtcattcgttgaggactctccactttggatataagagctataaaagtacaattaagtcattttgtcagtttgtcattctgatgaaa |
100 |
Q |
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| T |
10876271 |
taggacggaaattagtcattcgttgaggactctccactttggatataagagctataaaagtacaattaagtccttttgtcagtttgtcattctgatgaaa |
10876370 |
T |
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| Q |
101 |
ctcataaaaataaatcgcatcaaatcaccctttaagtccactcatcgacaattaacaatatcgggcaatgatctgataaaccacgaggcagagccacatg |
200 |
Q |
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| T |
10876371 |
ctaagaaaaataaatcgcatcaaatcaccctttaagtccactcatcgacaattaataatatcgggcaatgatctgataaaccacgaggcagaaccacatg |
10876470 |
T |
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| Q |
201 |
aatatagttaggccataacaaactcaactcttctgacaataaaaa |
245 |
Q |
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| T |
10876471 |
aatatagttaggccataacaaactcaactcttctgacaataaaaa |
10876515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 13226743 - 13226802
Alignment:
| Q |
5 |
acggaaattagtcattcgttgaggactctccactttggatataagagctataaaagtaca |
64 |
Q |
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| T |
13226743 |
acggaaataactcagtcgttgaggactctccactttgggtataagagctataaaagtaca |
13226802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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