View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21074_low_11 (Length: 438)
Name: NF21074_low_11
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21074_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 3644843 - 3645247
Alignment:
| Q |
17 |
aatatatggtgctgttgaatctgcttccattgcattgtttggtcccataattggaacatgggttgataagttgacttaccaaaaggtgtgatcccaaata |
116 |
Q |
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| T |
3644843 |
aatatatggtgctgttgaatctgcttccattgcattgtttggtcccataattggaacatgggttgataagttgacttaccaaaaggtgtgatcccaaata |
3644942 |
T |
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| Q |
117 |
tattgctaacttcttctttgaacaaattgagattttagtttgcggttgcagttgcagttgcgtttcaattcttaatattgtaaagaattgtagtcaaatg |
216 |
Q |
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| T |
3644943 |
tattgctaacttcttctttgaacaaatcaagattttagtttgcggttg------cagttgcgtttcaattcttaatattgtaaagaattgtagtcaaatg |
3645036 |
T |
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| Q |
217 |
tgattcacgttcgcgttgtggtcatacagacatccaaaattttgatgtcatgtactgtataatttgggttttatgtctgtttttggtgtaaccgtagaag |
316 |
Q |
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| T |
3645037 |
tgattcacgttcgcgttgtggtcatacagacatccaaagttttgatgtcatgtactgtataatttgggttttatgtctgtttttggtgtaaccgtagaag |
3645136 |
T |
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| Q |
317 |
ataaaaaagtaaacagagaaataaacatatatagtgtcacatacagcgtcagtgttctgatgttcaaataagacaattgttatgttaatcatcacatatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3645137 |
ataaaaaagtaaacagagaaataaacatatatagtgtcacatacagcgtcagtgatctgatgttcaaataacacaattgttatgttaatcatcacatatg |
3645236 |
T |
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| Q |
417 |
cttagattctt |
427 |
Q |
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| T |
3645237 |
cttagattctt |
3645247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 3635411 - 3635507
Alignment:
| Q |
17 |
aatatatggtgctgttgaatctgcttccattgcattgtttggtcccataattggaacatgggttgataagttgacttaccaaaaggtgtgatcccaa |
113 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3635411 |
aatatatggggctgttgaatctgcttccattgcattgtttggtcctttgattggaacatgggttgataagttgacttatgtgaaggtgtgatcccaa |
3635507 |
T |
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