View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21074_low_14 (Length: 399)
Name: NF21074_low_14
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21074_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 9168915 - 9169286
Alignment:
| Q |
12 |
atgaatagcaggaaagttcaattagaagatcatttagtggtaaaagtggacacgagaacataatcaaacaaaacaattttggtcttgcacgctgtacata |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9168915 |
atgaatagcaggaaagttcaattagaagatcatttagtggtaaaagtggacacgagaacataatcaaacaaaacaattttggtcttgcacgctgtacata |
9169014 |
T |
|
| Q |
112 |
aacatgatgatttttctcagtcaagagtgaagacttggtttttaagcggtacaagaggtttttctttatagaacttggtgttgtcaatggtaagcacaac |
211 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9169015 |
aacatgatgatttttctcagtca-gagtgaagacttggtttttaagcggtacaagaggtttttctttatagaacttggtgttgtcaatgataagcacaac |
9169113 |
T |
|
| Q |
212 |
tttaccaggttcactaattttaaaactattgcaaaggagagggacgacggcggcagatctgttactcacaagtcacaagtgagatacgaagagagaagag |
311 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9169114 |
tttaccaggttcactaattttaaaactgttgcaaaggagagggacgacggcggcagatctgttactcacaagtcacaagtgagatacgaagagagaagag |
9169213 |
T |
|
| Q |
312 |
agggtgaaaagaaaaacttgcagttgctgttggtggtggtggtgcgagtaagacatggagaggaagagagaag |
384 |
Q |
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| T |
9169214 |
agggtgaaaagaaaaacttgcagttgctgttggtggtggtggtgcgagtaagacatggagaggaagagagaag |
9169286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 384
Target Start/End: Complemental strand, 21220200 - 21219824
Alignment:
| Q |
12 |
atgaatagcaggaaagttcaattagaagatcatttagtggtaaaagtggacacgagaacataatcaaacaaaacaattttggtcttgcacgctgtacata |
111 |
Q |
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|||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |
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| T |
21220200 |
atgaatagcaggaaagttaaattagaagattatttggtggtaaaagtggacacgagaacataatcaaacaaaacaactttggtcttacacgttgtacata |
21220101 |
T |
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| Q |
112 |
aacatgatgatttttctcagtca-agagtgaagacttggtttttaagcggtacaagaggtttttctttatagaacttggtgttgtcaatggtaagcacaa |
210 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21220100 |
aacatgatgatttttctcaatcagagagtgaagacttggtttttaaacggtacaagaggtttttctttatagaacttggtgttgtcaatggtaagcacaa |
21220001 |
T |
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| Q |
211 |
ctttaccaggttcactaattttaaaactattgcaaaggagagggacgacggcggcagatctgttactcacaagtcacaagtgagatacgaagagagaaga |
310 |
Q |
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| T |
21220000 |
ctttaccaggttcattagttttaaaactgttgcaaaggaaagggacggcggcggcagatctgttactcacaagtcacaagtgagatacaaagagagaaga |
21219901 |
T |
|
| Q |
311 |
gagggtgaaaagaaaaacttgcagttgctgttggtggtggtggt--gcgagtaagacatgga-gaggaagagagaag |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
21219900 |
gagggtgaaaagaaaaacttgcagttgctgttggtggtggtggtgggcgagtaagacatggaggaggaagagagaag |
21219824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 44643752 - 44643660
Alignment:
| Q |
139 |
tgaagacttggtttttaagcggtacaagaggtttttctttatagaacttggtgttgtcaatggtaagcacaactttaccaggttcactaatttt |
232 |
Q |
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||||| |||||| || |||||||||||||| || ||||| |||| |||| ||||||||||| || |||||||| |||||||||| |||||| |
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| T |
44643752 |
tgaaggcttggtcttcaagcggtacaagagcttcttcttcttagagcttgaa-ttgtcaatggtgagaacaactttcccaggttcaccaatttt |
44643660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 39895636 - 39895399
Alignment:
| Q |
23 |
gaaagttcaattagaagatcatttagtggtaaaagtggacacga-gaacataatcaaacaaaacaattttggtcttgcacgctgtacat----------- |
110 |
Q |
| |
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|||||| ||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39895636 |
gaaagtacaatttgaagatcatttggtggtaaaagtggacacaaagaacataatcaaacaaaacaattttggtcttgcacgttgtacattttcacttgtg |
39895537 |
T |
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| Q |
111 |
-aaacatgatgatttttctcagtca-agagtgaagacttggtttttaagcggtacaagaggtttttctttatagaacttggtgttgtcaatggtaagcac |
208 |
Q |
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| T |
39895536 |
caaacataatgatttatctcagtcagagagtgaagtcttggtcttcaagcggtacaagagctttttcttcctagaacttg-tgttgtcaatggtaagaac |
39895438 |
T |
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| Q |
209 |
aactttaccaggttcactaattttaaaactattgcaaag |
247 |
Q |
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|||||||||||||||| ||||||||||||| |||||||| |
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| T |
39895437 |
aactttaccaggttcattaattttaaaactgttgcaaag |
39895399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 8961840 - 8961793
Alignment:
| Q |
248 |
gagagggacgacggcggcagatctgttactcacaagtcacaagtgaga |
295 |
Q |
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|||||||||| ||||||||||||| |||||||||| |||||||||||| |
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| T |
8961840 |
gagagggacggcggcggcagatctattactcacaaatcacaagtgaga |
8961793 |
T |
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