View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21074_low_15 (Length: 397)

Name: NF21074_low_15
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21074_low_15
NF21074_low_15
[»] chr8 (1 HSPs)
chr8 (10-381)||(39854407-39854777)
[»] chr4 (2 HSPs)
chr4 (35-381)||(21955259-21955600)
chr4 (86-248)||(11188340-11188502)
[»] chr3 (2 HSPs)
chr3 (96-375)||(52056034-52056312)
chr3 (96-375)||(53575644-53575922)
[»] scaffold0002 (1 HSPs)
scaffold0002 (96-375)||(466625-466903)
[»] chr5 (1 HSPs)
chr5 (96-375)||(35896017-35896295)
[»] chr2 (1 HSPs)
chr2 (96-375)||(30200789-30201067)
[»] chr1 (2 HSPs)
chr1 (96-375)||(31353555-31353833)
chr1 (96-375)||(16990842-16991120)
[»] chr7 (1 HSPs)
chr7 (96-277)||(27142913-27143094)


Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 381
Target Start/End: Complemental strand, 39854777 - 39854407
Alignment:
Q  10 aagaatattggaagccatagataaatatggtttttgataacattgagactgcttggaacttttgggttaagtatggatggtggaagggtttgatttggag 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39854777 aagaaaattggaagccatagataaatatggtttttgataacattgagactgcttggaacttttgggtaaagtatggatggtggaagggtttgatttggag 39854678  T
Q  110 ttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagccagacaaacatgatca 209  Q
      |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39854677 ggaggaaggattatacacacaagaaaaaagatggttcaactaattcatgtagatttgtttgctttaaagaaggtttacgaaagccagacaaacatgatcg 39854578  T
Q  210 taaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggttcatgaatttgtgga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       ||||||||||||||||||||||    
T  39854577 taaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggacttaaaaatgtggttg-aaaaaatggtggttcatgaatttgtgga 39854479  T
Q  310 agagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttcagaatt 381  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  39854478 agagcataaccatgatttacatctgcaagaaacaattcatatgttgtcatctcaacgaaaagtttcagaatt 39854407  T

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Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 35 - 381
Target Start/End: Original strand, 21955259 - 21955600
Alignment:
Q  35 tatggtttttgataacattgagactgcttggaacttttgggttaagtatggatggtggaagggtttgatttggagttaggaaggattatacacgcaagaa 134  Q
    |||||||||||| | |||||||  |||||||||||||||||   | |||||    ||||| |||| ||||||||   |||||  |||||||||  |||||    
T  21955259 tatggtttttgacagcattgaggttgcttggaacttttgggcatattatgg----tggaaaggttggatttggatcgaggaaacattatacacataagaa 21955354  T
Q  135 aaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagccagacaaacatgatcataaaacagtcaatccaagactagag 234  Q
    ||||||||||||| ||| |||||| ||||||||||| | ||||||||||||  | ||| |||||||||  ||  |||||||| ||||||||| || ||||    
T  21955355 aaaagatggttcagctagttcttccagatttgtttgatgtaaagaaggtttttggaagtcagacaaacgagaatataaaacaatcaatccaaaaccagag 21955454  T
Q  235 actagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggttcatgaatttgtggaagagcataaccatgatttacatctg 334  Q
    |||  ||| ||||||  ||||| |  |||| ||||||||||||||        ||||||| ||||||||||  || || ||||||||||||||||||||     
T  21955455 actgtaacaaattgtaaagcaacaccaggacttaaaaatgtggtt-ccaacattggtggtgcatgaatttgcagaggaacataaccatgatttacatcta 21955553  T
Q  335 caagaaataattcatatgttgtcatctcaacaaaaagtttcagaatt 381  Q
      | ||| | |||||||||||||||||||||||||||| ||| ||||    
T  21955554 tcacaaacacttcatatgttgtcatctcaacaaaaagtatcaaaatt 21955600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 248
Target Start/End: Original strand, 11188340 - 11188502
Alignment:
Q  86 atggtggaagggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggttt 185  Q
    |||||||||| ||| |||||||||| |||||  | ||| |||  |||| ||||||||||| ||| | |||||  ||||||||||| | ||| ||||||||    
T  11188340 atggtggaagagttggatttggagtgaggaaacaatattcacataagacaaaagatggtttaacgacttcttgcagatttgtttgttgtaacgaaggttt 11188439  T
Q  186 acgaaagccagacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattg 248  Q
     ||||||||||||||||  |||  ||||||  |||||||||| | |||||| ||||| |||||    
T  11188440 gcgaaagccagacaaacgagattttaaaactatcaatccaaggccagagaccagaacaaattg 11188502  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 96 - 375
Target Start/End: Complemental strand, 52056312 - 52056034
Alignment:
Q  96 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 195  Q
    |||| |||| ||||| ||||| |||||||||| || |||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  52056312 ggttggattcggagtgaggaaagattatacacacaggaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 52056213  T
Q  196 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 295  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  |||||| |||||| |||| ||||||| ||       || ||||     
T  52056212 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaagcaaggttaggacttaagaatgtggatg-gaaaattgatggtg 52056114  T
Q  296 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 375  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  52056113 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 52056034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 96 - 375
Target Start/End: Complemental strand, 53575922 - 53575644
Alignment:
Q  96 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 195  Q
    |||| |||| ||||| ||||| |||||||||| ||  ||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  53575922 ggttggattcggagtgaggaaagattatacacacagaaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 53575823  T
Q  196 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 295  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  |||||| |||||| |||| ||||||| ||       || ||||     
T  53575822 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaagcaaggttaggacttaagaatgtggatg-gaaaattgatggtg 53575724  T
Q  296 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 375  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  53575723 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 53575644  T

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Target: scaffold0002 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 96 - 375
Target Start/End: Complemental strand, 466903 - 466625
Alignment:
Q  96 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 195  Q
    |||| |||| ||||| ||||| |||||||||| ||  ||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  466903 ggttggattcggagtgaggaaagattatacacacagaaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 466804  T
Q  196 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 295  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  |||||| |||||| |||| ||||||| ||       || ||||     
T  466803 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaagcaaggttaggacttaagaatgtggatg-gaaaattgatggtg 466705  T
Q  296 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 375  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  466704 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 466625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 96 - 375
Target Start/End: Original strand, 35896017 - 35896295
Alignment:
Q  96 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 195  Q
    |||| |||| ||||| ||||| |||||||||| ||  ||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  35896017 ggttggattcggagtgaggaaagattatacacacagaaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 35896116  T
Q  196 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 295  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  |||||| |||||| |||| ||||||| ||       || ||||     
T  35896117 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaagcaaggttaggacttaagaatgtggatg-gaaaattgatggtg 35896215  T
Q  296 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 375  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  35896216 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 35896295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 96 - 375
Target Start/End: Complemental strand, 30201067 - 30200789
Alignment:
Q  96 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 195  Q
    |||| |||| ||||| ||||| |||||||||| ||  ||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  30201067 ggttggattcggagtgaggaaagattatacacacagaaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 30200968  T
Q  196 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 295  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  |||||| |||||| |||| ||||||| ||       || ||||     
T  30200967 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaagcaaggttaggacttaagaatgtggatg-gaaaattgatggtg 30200869  T
Q  296 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 375  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  30200868 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 30200789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 96 - 375
Target Start/End: Original strand, 31353555 - 31353833
Alignment:
Q  96 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 195  Q
    |||| |||| ||||| ||||| |||||||||| ||  ||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  31353555 ggttggattcggagtgaggaaagattatacacacagaaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 31353654  T
Q  196 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 295  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  |||||| |||||| |||| ||||||| ||       || ||||     
T  31353655 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaagcaaggttaggacttaagaatgtggatg-gaaaattgatggtg 31353753  T
Q  296 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 375  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  31353754 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 31353833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 375
Target Start/End: Original strand, 16990842 - 16991120
Alignment:
Q  96 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 195  Q
    |||| |||| ||||| ||||| |||||||||| ||  ||||| |||||||||  |  ||||| ||| ||||||||||  ||||||||  | |||||||||    
T  16990842 ggttggattcggagtgaggaaagattatacacacagcaaaaaggatggttcagtttcttcttgtaggtttgtttgctgcaaagaaggcatgcgaaagcca 16990941  T
Q  196 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtggttgnnnnnnntggtggtt 295  Q
    ||||| |  ||| ||||||||   ||||||||||||||||| ||||| ||||||  | |||| |||||| |||| ||||||| ||       || ||||     
T  16990942 gacaagcgagattataaaacaaagaatccaagactagagaccagaacaaattgtgaaacaaggttaggacttaagaatgtggatg-gaaaattgatggtg 16991040  T
Q  296 catgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttc 375  Q
    ||||| |||||||| || || ||||| || |||| | ||| ||||| || |||||||||||| ||||||| ||| |||||    
T  16991041 catgattttgtggaggaccacaaccacgagttacttttgccagaaacaactcatatgttgtcgtctcaacgaaaggtttc 16991120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 277
Target Start/End: Original strand, 27142913 - 27143094
Alignment:
Q  96 ggtttgatttggagttaggaaggattatacacgcaagaaaaaagatggttcaactaattcttctagatttgtttgctttaaagaaggtttacgaaagcca 195  Q
    |||| |||||||||| ||||| |||||||||| || ||  || |||||||||| |  ||||| ||| || |||||||  ||||||||  |||||||||||    
T  27142913 ggttggatttggagtgaggaaagattatacacacaggagcaaggatggttcaatttcttcttgtaggttcgtttgctgcaaagaaggcatacgaaagcca 27143012  T
Q  196 gacaaacatgatcataaaacagtcaatccaagactagagactagaacgaattgtcgagcaagattaggaattaaaaatgtgg 277  Q
     |||| |  ||||||||||||   ||| |||||||||| || ||||| ||||||  |||||||||| || |||| |||||||    
T  27143013 aacaagcgagatcataaaacaaagaattcaagactagaaaccagaacaaattgtgaagcaagattatgacttaagaatgtgg 27143094  T

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