View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21074_low_17 (Length: 372)

Name: NF21074_low_17
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21074_low_17
NF21074_low_17
[»] chr5 (22 HSPs)
chr5 (1-372)||(2610950-2611325)
chr5 (32-185)||(7609530-7609683)
chr5 (30-186)||(14863304-14863460)
chr5 (59-177)||(21052626-21052743)
chr5 (59-177)||(11320124-11320240)
chr5 (60-181)||(35185255-35185375)
chr5 (60-179)||(22180251-22180369)
chr5 (37-165)||(31619295-31619421)
chr5 (33-184)||(12187154-12187305)
chr5 (57-183)||(6102824-6102949)
chr5 (86-175)||(12036308-12036395)
chr5 (32-146)||(8435026-8435142)
chr5 (133-181)||(18677920-18677968)
chr5 (56-174)||(1447555-1447673)
chr5 (33-126)||(16801998-16802092)
chr5 (93-183)||(3600142-3600231)
chr5 (191-230)||(12241066-12241105)
chr5 (32-124)||(7319227-7319321)
chr5 (79-177)||(11815929-11816026)
chr5 (79-173)||(27544607-27544700)
chr5 (30-126)||(28511197-28511295)
chr5 (191-232)||(39828474-39828515)
[»] chr3 (33 HSPs)
chr3 (33-185)||(44291220-44291372)
chr3 (31-185)||(42163596-42163751)
chr3 (30-184)||(15671108-15671262)
chr3 (31-154)||(43862910-43863034)
chr3 (35-182)||(27143974-27144120)
chr3 (28-172)||(32720523-32720667)
chr3 (32-174)||(43652470-43652612)
chr3 (84-184)||(44041315-44041415)
chr3 (65-184)||(17109525-17109644)
chr3 (32-176)||(23208143-23208285)
chr3 (29-175)||(43014611-43014761)
chr3 (68-184)||(35322016-35322129)
chr3 (56-165)||(36258672-36258782)
chr3 (53-180)||(49710937-49711062)
chr3 (30-164)||(52992414-52992546)
chr3 (59-168)||(47877284-47877393)
chr3 (56-177)||(48338807-48338928)
chr3 (30-126)||(32961149-32961246)
chr3 (30-144)||(20585772-20585888)
chr3 (87-163)||(49419063-49419139)
chr3 (78-169)||(55446750-55446839)
chr3 (111-183)||(38359097-38359168)
chr3 (79-186)||(4020116-4020222)
chr3 (94-177)||(48252269-48252351)
chr3 (56-177)||(635703-635824)
chr3 (190-232)||(35990535-35990577)
chr3 (79-183)||(28709558-28709661)
chr3 (79-177)||(1711922-1712019)
chr3 (79-116)||(2379662-2379699)
chr3 (194-230)||(35060572-35060609)
chr3 (103-184)||(49261822-49261902)
chr3 (79-148)||(54801356-54801425)
chr3 (193-225)||(42088735-42088767)
[»] chr7 (28 HSPs)
chr7 (33-186)||(22035703-22035857)
chr7 (30-185)||(45907024-45907179)
chr7 (58-175)||(36636008-36636124)
chr7 (63-180)||(19689502-19689618)
chr7 (32-175)||(8117444-8117587)
chr7 (59-182)||(16861675-16861797)
chr7 (31-174)||(41434673-41434813)
chr7 (34-146)||(21798770-21798882)
chr7 (60-175)||(16563469-16563584)
chr7 (60-175)||(16602078-16602193)
chr7 (30-181)||(19777886-19778037)
chr7 (32-146)||(26203047-26203162)
chr7 (59-186)||(37928297-37928424)
chr7 (31-146)||(7833772-7833889)
chr7 (82-183)||(31487702-31487802)
chr7 (133-185)||(27364664-27364716)
chr7 (57-186)||(39786441-39786570)
chr7 (60-144)||(3624254-3624339)
chr7 (32-183)||(47445348-47445500)
chr7 (103-183)||(19677037-19677116)
chr7 (56-146)||(16979936-16980027)
chr7 (79-146)||(30774946-30775013)
chr7 (190-232)||(9483391-9483433)
chr7 (60-183)||(16685729-16685854)
chr7 (60-183)||(17659965-17660090)
chr7 (190-240)||(21454242-21454292)
chr7 (86-124)||(32279705-32279742)
chr7 (94-183)||(1359708-1359796)
[»] chr2 (28 HSPs)
chr2 (33-185)||(19889716-19889869)
chr2 (34-170)||(21646482-21646618)
chr2 (31-113)||(11610471-11610554)
chr2 (55-154)||(37913024-37913123)
chr2 (56-126)||(18243787-18243857)
chr2 (54-152)||(4141633-4141730)
chr2 (31-184)||(40574134-40574288)
chr2 (31-183)||(1870486-1870638)
chr2 (86-179)||(23788402-23788494)
chr2 (60-175)||(32345477-32345591)
chr2 (60-177)||(13738393-13738510)
chr2 (115-180)||(18243299-18243364)
chr2 (52-185)||(19994908-19995041)
chr2 (79-141)||(27896481-27896543)
chr2 (32-144)||(35501370-35501483)
chr2 (60-180)||(23760588-23760706)
chr2 (191-232)||(44013877-44013918)
chr2 (79-175)||(13717196-13717290)
chr2 (93-177)||(13835868-13835951)
chr2 (30-144)||(16498137-16498253)
chr2 (93-184)||(5444483-5444573)
chr2 (56-146)||(8580506-8580597)
chr2 (87-181)||(11610374-11610467)
chr2 (191-232)||(3103532-3103573)
chr2 (79-183)||(4557589-4557693)
chr2 (102-139)||(44818428-44818465)
chr2 (81-149)||(19606296-19606364)
chr2 (191-231)||(41508544-41508584)
[»] chr8 (34 HSPs)
chr8 (52-184)||(28462534-28462665)
chr8 (28-171)||(900237-900381)
chr8 (28-161)||(37919365-37919499)
chr8 (58-184)||(39065527-39065650)
chr8 (59-182)||(39209356-39209477)
chr8 (38-176)||(39534137-39534275)
chr8 (58-184)||(41675662-41675787)
chr8 (59-184)||(29795503-29795627)
chr8 (58-177)||(30924829-30924948)
chr8 (74-140)||(20821903-20821969)
chr8 (59-177)||(10029159-10029277)
chr8 (56-183)||(20542381-20542508)
chr8 (70-174)||(42654596-42654699)
chr8 (79-177)||(41726914-41727011)
chr8 (58-154)||(25347643-25347737)
chr8 (58-114)||(38362264-38362320)
chr8 (79-146)||(14110642-14110708)
chr8 (28-177)||(35901414-35901563)
chr8 (82-183)||(13873718-13873818)
chr8 (31-148)||(38388490-38388610)
chr8 (82-186)||(44648927-44649030)
chr8 (79-186)||(6270139-6270244)
chr8 (103-177)||(3347509-3347582)
chr8 (86-183)||(40607324-40607419)
chr8 (88-146)||(1988807-1988865)
chr8 (58-119)||(18131188-18131249)
chr8 (79-177)||(18200679-18200776)
chr8 (31-146)||(22266251-22266366)
chr8 (28-100)||(1551461-1551534)
chr8 (190-231)||(10170397-10170438)
chr8 (190-227)||(33697156-33697193)
chr8 (82-183)||(40489871-40489970)
chr8 (56-183)||(11150917-11151043)
chr8 (33-177)||(17720176-17720322)
[»] chr1 (38 HSPs)
chr1 (32-182)||(31884453-31884603)
chr1 (32-177)||(26855824-26855969)
chr1 (60-181)||(33827818-33827939)
chr1 (60-181)||(33840026-33840147)
chr1 (29-162)||(44109083-44109217)
chr1 (28-154)||(50127368-50127495)
chr1 (60-179)||(50468802-50468921)
chr1 (57-183)||(40391209-40391335)
chr1 (28-179)||(15419646-15419798)
chr1 (35-180)||(30627610-30627755)
chr1 (33-185)||(48282881-48283023)
chr1 (33-110)||(16963639-16963716)
chr1 (31-125)||(27742523-27742617)
chr1 (59-181)||(19066858-19066979)
chr1 (59-181)||(19114748-19114869)
chr1 (53-181)||(13534491-13534618)
chr1 (33-175)||(13969099-13969242)
chr1 (82-186)||(46295860-46295963)
chr1 (93-181)||(20471326-20471413)
chr1 (93-181)||(20560124-20560211)
chr1 (103-183)||(8001739-8001818)
chr1 (54-181)||(18910397-18910525)
chr1 (79-183)||(39238849-39238952)
chr1 (88-144)||(11802935-11802991)
chr1 (79-175)||(27688497-27688592)
chr1 (79-174)||(27517-27610)
chr1 (58-101)||(20359312-20359355)
chr1 (58-101)||(20551615-20551658)
chr1 (30-116)||(36160536-36160623)
chr1 (79-177)||(11449078-11449175)
chr1 (55-140)||(38597473-38597559)
chr1 (190-232)||(43328474-43328516)
chr1 (190-232)||(43609828-43609870)
chr1 (52-101)||(20471726-20471775)
chr1 (52-101)||(20559762-20559811)
chr1 (79-116)||(33148917-33148954)
chr1 (81-173)||(10226464-10226555)
chr1 (79-183)||(26829510-26829613)
[»] scaffold0006 (1 HSPs)
scaffold0006 (31-186)||(38771-38925)
[»] chr4 (34 HSPs)
chr4 (28-180)||(31647687-31647839)
chr4 (33-169)||(38320124-38320261)
chr4 (60-186)||(19147137-19147262)
chr4 (60-181)||(47397604-47397724)
chr4 (75-179)||(31241947-31242051)
chr4 (33-108)||(20542717-20542792)
chr4 (86-182)||(51100019-51100114)
chr4 (109-182)||(38319533-38319606)
chr4 (32-146)||(50086660-50086776)
chr4 (59-177)||(20775069-20775187)
chr4 (59-156)||(3319268-3319365)
chr4 (105-170)||(20542600-20542664)
chr4 (56-183)||(27284066-27284193)
chr4 (80-172)||(37431785-37431876)
chr4 (73-129)||(51759207-51759263)
chr4 (58-177)||(53142777-53142896)
chr4 (94-185)||(41142284-41142374)
chr4 (73-140)||(54248993-54249060)
chr4 (79-177)||(22019621-22019718)
chr4 (86-186)||(13967870-13967969)
chr4 (105-180)||(14347118-14347191)
chr4 (79-183)||(55090799-55090901)
chr4 (79-174)||(2565412-2565506)
chr4 (79-186)||(12094976-12095082)
chr4 (86-177)||(16341100-16341190)
chr4 (197-232)||(30127684-30127719)
chr4 (86-177)||(45921337-45921426)
chr4 (190-240)||(20119952-20120002)
chr4 (194-232)||(24875735-24875773)
chr4 (97-171)||(44190255-44190328)
chr4 (31-146)||(16072310-16072427)
chr4 (79-140)||(19480555-19480616)
chr4 (191-232)||(50269864-50269905)
chr4 (35-125)||(48202457-48202549)
[»] chr6 (16 HSPs)
chr6 (31-182)||(17506233-17506386)
chr6 (58-179)||(21809802-21809922)
chr6 (53-174)||(4803147-4803268)
chr6 (59-140)||(10008190-10008272)
chr6 (94-174)||(2398041-2398120)
chr6 (56-183)||(6770827-6770955)
chr6 (79-175)||(5611129-5611224)
chr6 (54-113)||(19418587-19418647)
chr6 (60-146)||(10252964-10253051)
chr6 (73-148)||(18493255-18493330)
chr6 (86-177)||(20208011-20208100)
chr6 (86-177)||(22102034-22102123)
chr6 (30-146)||(17900773-17900891)
chr6 (82-175)||(26608907-26608998)
chr6 (190-230)||(2820376-2820416)
chr6 (56-175)||(32134040-32134159)
[»] scaffold0034 (1 HSPs)
scaffold0034 (51-185)||(22414-22547)
[»] scaffold0078 (1 HSPs)
scaffold0078 (61-175)||(861-975)
[»] scaffold0886 (1 HSPs)
scaffold0886 (60-185)||(1095-1219)
[»] scaffold0117 (1 HSPs)
scaffold0117 (60-152)||(16852-16944)
[»] scaffold1372 (1 HSPs)
scaffold1372 (78-185)||(1261-1378)
[»] scaffold0068 (1 HSPs)
scaffold0068 (60-181)||(52011-52131)
[»] scaffold0299 (1 HSPs)
scaffold0299 (56-177)||(18014-18136)
[»] scaffold0039 (1 HSPs)
scaffold0039 (57-174)||(29988-30105)
[»] scaffold0205 (1 HSPs)
scaffold0205 (191-232)||(21424-21465)
[»] scaffold0079 (1 HSPs)
scaffold0079 (86-177)||(51671-51761)
[»] scaffold0592 (1 HSPs)
scaffold0592 (52-101)||(9024-9073)
[»] scaffold0024 (1 HSPs)
scaffold0024 (190-227)||(151415-151452)
[»] scaffold0002 (1 HSPs)
scaffold0002 (121-177)||(120729-120784)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 2611325 - 2610950
Alignment:
Q  1 cacagaccaggacacgatac--acacgtcaataaggagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaa 97  Q
    |||| |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2611325 cacaaaccaggacacgatactgacacgtcaataaggagaatgttaaccagggcccctggggcattggttaagcaccaaatgaagtaagtttttattaaaa 2611226  T
Q  98 agtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcccc-gacccataataa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||  ||||||||||||    
T  2611225 agtaatgtaattattacttaataaaaagtgacagcttatatttccaagacataaatttctatttatagattccttaaccagtgcccttgacccataataa 2611126  T
Q  197 tttgagaaaataaaattattgaatgtaaccacatgtcttagtgtgtcatgtcggacatcagacacgcctttggtataaaagtgtctgtgctactgagttt 296  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2611125 tttgagaaaataaaattattgaatgtaaccacatgtcctagtgtgtcatgtcggacatcagacacgcctttggtataaaagtgtctgtgctactgagttt 2611026  T
Q  297 gaaacagttaaaacgccagcaagaggttgttaataaaatagaattatacttgtatattattattgaattgtatttt 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2611025 gaaacagttaaaacgccagcaagaggttgttaataaaatagaattatacttgtataatattattgaattgtatttt 2610950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 7609683 - 7609530
Alignment:
Q  32 aggagaatgttaaccagggc-cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 130  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |    
T  7609683 aggagaatgttaaccagtgctcccggggcattggttaagcaccaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaaatgata 7609584  T
Q  131 gcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 185  Q
    | |||||||||||| | ||||| || || ||||||||||||||| ||||||||||    
T  7609583 gtttatatttccaaaacagaaa-ttctaattatagattccttaatcagtgccccg 7609530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 14863304 - 14863460
Alignment:
Q  30 taaggagaatgttaaccagggccccgggg-cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 128  Q
    ||||||||||||||| ||| ||||| ||  ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  14863304 taaggagaatgttaatcagtgcccccggaacattggttaagcaccaaaaaaagtaagtttttattaaaaattaatgtaattattacttgataaaaagtga 14863403  T
Q  129 cagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccga 186  Q
    ||| |||||||| ||||| | ||| || ||||||||||||| |||||||||| |||||    
T  14863404 cagtttatattttcaagacataaa-ttatatttatagattctttaaccagtgtcccga 14863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 59 - 177
Target Start/End: Complemental strand, 21052743 - 21052626
Alignment:
Q  59 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 158  Q
    |||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||| |||||| |||| |||||    
T  21052743 cattggttaagcaccaaaagaagtaagtttttattaaaaaatcatgtaattattacttgataaaaagtgacagtttatatttgcaagatggaaa-tttta 21052645  T
Q  159 tttatagattccttaacca 177  Q
    |||||| ||||||||||||    
T  21052644 tttataaattccttaacca 21052626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 11320124 - 11320240
Alignment:
Q  59 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 158  Q
    ||||||||||||||||||  |||| | ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| |||||    
T  11320124 cattggttaagcaccaaaa-aagttaatttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttctaagatagaaa-tttta 11320221  T
Q  159 tttatagattccttaacca 177  Q
     ||||||||||||||||||    
T  11320222 attatagattccttaacca 11320240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 35185255 - 35185375
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| ||||| | ||| || |||    
T  35185255 attggttaagcaccaaataaaataagtttttattaaaaagtaatgtaattattactaaat-aaaagtgacagtttatattttcaagacataaaattctat 35185353  T
Q  160 ttatagattccttaaccagtgc 181  Q
    |||||||||| |||||||||||    
T  35185354 ttatagattctttaaccagtgc 35185375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 22180369 - 22180251
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    |||||||||||||||||| || ||| ||||||||||||| |||| ||||||||| |||||||||| |||||| |||||||| ||| ||||||| ||||||    
T  22180369 attggttaagcaccaaataaaataaatttttattaaaaaataatataattattatttaataaaaa-tgacagtttatattttcaaaatagaaaattttat 22180271  T
Q  160 ttatagattccttaaccagt 179  Q
    ||||||||||||||| ||||    
T  22180270 ttatagattccttaatcagt 22180251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 31619295 - 31619421
Alignment:
Q  37 aatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttat 136  Q
    |||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || || | ||||||| | ||||    
T  31619295 aatgttaaccagtgcctctgggcattggttaagcaccaaatgaagtaaatttttattaaaaagtaatgtaattattatttcat-agaagtgac-gtttat 31619392  T
Q  137 atttccaagatagaaatttttatttatag 165  Q
    ||||| |||| ||||| || |||||||||    
T  31619393 atttctaagacagaaaattctatttatag 31619421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 33 - 184
Target Start/End: Original strand, 12187154 - 12187305
Alignment:
Q  33 ggagaatgttaaccagggccccgg-ggcattggttaagcaccaaatgaagtaagtttttatt-aaaaagtaatgtaattattacttaataaaaagtgaca 130  Q
    |||||||||||||| | | ||| | ||||||| ||||||||||||| | ||||||||||||| ||||| |||||||||||||||||  |||||||||||     
T  12187154 ggagaatgttaacctgtgtccctgaggcattgattaagcaccaaataaggtaagtttttattaaaaaaataatgtaattattactt-gtaaaaagtgacc 12187252  T
Q  131 gcttatatttccaagatagaaatttttatttatagattccttaaccagtgcccc 184  Q
    | |||||||||||||| | ||| || ||||| ||||||| ||||||| ||||||    
T  12187253 gtttatatttccaagaca-aaaattctatttgtagattctttaaccaatgcccc 12187305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 6102824 - 6102949
Alignment:
Q  57 ggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattt 155  Q
    ||||||||||||||| |||||  |||||| |||||||||||| ||| ||||||||||||||||| |||||| | | |||||||||  |||| | || |||    
T  6102824 ggcattggttaagcaaccaaaataagtaactttttattaaaa-gtattgtaattattacttaatcaaaagtcaaaacttatattttgaagaca-aatttt 6102921  T
Q  156 ttatttatagattccttaaccagtgccc 183  Q
     ||||||||||||||||||||| |||||    
T  6102922 ctatttatagattccttaaccattgccc 6102949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 12036395 - 12036308
Alignment:
Q  86 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaac 175  Q
    |||||||||||| ||||||||||||||||||||| |||||| | | ||||||||| ||||| | || ||| ||||||||| |||||||||    
T  12036395 tttttattaaaa-gtaatgtaattattacttaatcaaaagtcaaaacttatattttcaagaca-aattttctatttataggttccttaac 12036308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 8435026 - 8435142
Alignment:
Q  32 aggagaatgttaaccagggccccgg-ggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 129  Q
    ||||||||||||||||| ||||| | ||||||||||||||| |||||  ||||||| |||||||||||| |  | ||||||||| ||  | |||||| ||    
T  8435026 aggagaatgttaaccagtgcccctgaggcattggttaagcatccaaaataagtaagattttattaaaaaatggtataattattagttggtcaaaagttac 8435125  T
Q  130 agcttatatttccaaga 146  Q
    |  ||||||||||||||    
T  8435126 actttatatttccaaga 8435142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 18677968 - 18677920
Alignment:
Q  133 ttatatttccaagatagaaatttttatttatagattccttaaccagtgc 181  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||||    
T  18677968 ttatattttcaagatagaaaattctatttatagattccttaaccagtgc 18677920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 1447673 - 1447555
Alignment:
Q  56 gggcattggttaagcaccaaatg-aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 154  Q
    |||||||||||||||| ||||   ||||||||||||| | ||||||| ||||||||||||||  | ||  || ||||||||||||||||| ||| |||||    
T  1447673 gggcattggttaagcaacaaaaataagtaagtttttaatgaaaagtagtgtaattattacttggtcaactgtaacagcttatatttccaaaata-aaatt 1447575  T
Q  155 tttatttatagattccttaa 174  Q
    | || |||| |||| |||||    
T  1447574 tctacttatggatttcttaa 1447555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 16801998 - 16802092
Alignment:
Q  33 ggagaatgttaaccagggccc-cggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 126  Q
    |||||||||||| ||| |||| | ||| |||||||||||| |||||  || ||| ||||||| |||||||||||||||||||||||||| ||||||    
T  16801998 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttat-aaaaagtaatgtaattattacttaatcaaaagt 16802092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 3600142 - 3600231
Alignment:
Q  93 taaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 183  Q
    ||||||||||||||||||||||||||| |||| | | | ||||||||| ||||| | ||  |||||||||||| || |||||||| |||||    
T  3600142 taaaaagtaatgtaattattacttaattaaaattcaaaacttatattttcaagaca-aatattttatttatagttttcttaaccattgccc 3600231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 12241066 - 12241105
Alignment:
Q  191 taataatttgagaaaataaaattattgaatgtaaccacat 230  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  12241066 taataatttgagacaatgaaattattgaatgtaaccacat 12241105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 7319227 - 7319321
Alignment:
Q  32 aggagaatgttaaccagggccccg-gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaa 124  Q
    ||||||||||||| ||| |||||  |||||||||||||||| |||||   |||||| || |||||||||||  |||||| ||||||| |||||||    
T  7319227 aggagaatgttaaacagtgccccatgggcattggttaagcatccaaaaagagtaagattctattaaaaagttgtgtaataattacttgataaaaa 7319321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 11815929 - 11816026
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    |||||||||||||| |||||    |||||| ||||||| || |||||| ||| ||||||||| ||||| | |||||| ||||| ||||||| |||||||    
T  11815929 aagtaagtttttatgaaaaatatgtgtaatcattactttatcaaaagtaacatcttatattttcaagaca-aaatttctatttttagattcattaacca 11816026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 27544607 - 27544700
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattcctta 173  Q
    |||||| |||| || |||||||  |||||| ||||| | ||||||| | ||| ||||||||| ||||||| |||||| ||||| |||||||||||    
T  27544607 aagtaaattttcatgaaaaagttgtgtaatcattacatgataaaaaataacatcttatattttcaagata-aaatttctatttgtagattcctta 27544700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 28511295 - 28511197
Alignment:
Q  30 taaggagaatgttaaccagggccccggggcattggttaagc-accaaatgaagtaagtttttat-taaaaagtaatgtaattattacttaataaaaagt 126  Q
    |||| |||||||||||| | |||| |||| ||||||||||| ||||||  | ||||||||||||  |||||||| ||||||||||| || || ||||||    
T  28511295 taagtagaatgttaaccggtgccctggggtattggttaagcaaccaaaacatgtaagtttttataaaaaaagtagtgtaattattaattcatcaaaagt 28511197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 39828474 - 39828515
Alignment:
Q  191 taataatttgagaaaataaaattattgaatgtaaccacatgt 232  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  39828474 taataatttgagaatatgaaataattgaatgtaaccacatgt 39828515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 44291372 - 44291220
Alignment:
Q  33 ggagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacag 131  Q
    |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44291372 ggagaatgttaaccagtgcccccggggcattggttaagcaccaaaagaagtaagtatttattaaaaagtaatgtaattattacttaataaaaagtgacag 44291273  T
Q  132 cttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 185  Q
     |||||||||||||| ||||| || |||||||||||||||||||||||||||||    
T  44291272 tttatatttccaagacagaaa-ttctatttatagattccttaaccagtgccccg 44291220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 42163751 - 42163596
Alignment:
Q  31 aaggagaatgttaaccagggcc-ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 129  Q
    |||| ||||||||||| | ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42163751 aaggggaatgttaaccggtgcctccggggcattggttacacaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 42163652  T
Q  130 agcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 185  Q
     | |||||||||||||| ||||| || |||| ||||||||||||||||||||||||    
T  42163651 ggtttatatttccaagacagaaaattctattaatagattccttaaccagtgccccg 42163596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 15671262 - 15671108
Alignment:
Q  30 taaggagaatgttaaccagggccc-cggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 128  Q
    |||||||||||||||||||  |   ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15671262 taaggagaatgttaaccagtacatacggagcattggttaagaaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtga 15671163  T
Q  129 cagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcccc 184  Q
    ||| ||||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  15671162 cagtttatatttcgaagaca-aaaattttatttatagattccttaaccagtgcccc 15671108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 43862910 - 43863034
Alignment:
Q  31 aaggagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 129  Q
    |||||||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43862910 aaggagaatgttaaccggtgcccctggggcattggttaagccccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaagagtgac 43863009  T
Q  130 agcttatatttccaagatagaaatt 154  Q
    || |||||||||||||| |||||||    
T  43863010 agtttatatttccaagacagaaatt 43863034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 35 - 182
Target Start/End: Original strand, 27143974 - 27144120
Alignment:
Q  35 agaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagctt 134  Q
    |||||||||||||  ||||| || ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| ||    
T  27143974 agaatgttaaccaatgccccagg-cattggttaagcaacaaatgaactaagtttttattaaaaaataatgtaattattacttaataaaaagtcacagttt 27144072  T
Q  135 atatttccaagatagaaatttttatttatagattccttaaccagtgcc 182  Q
    ||||||| || | ||||| || |||||||||||| |||||||||||||    
T  27144073 atatttctaatacagaaaattctatttatagatttcttaaccagtgcc 27144120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 32720667 - 32720523
Alignment:
Q  28 aataaggagaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg 127  Q
    ||||||||||||||||| ||| |||| || | ||||||||||||| |||| |||||||||||||||||||| |||| |||||||||||||||||| ||||    
T  32720667 aataaggagaatgttaatcagtgccctggagtattggttaagcactaaattaagtaagtttttattaaaaaataatataattattacttaataaatagtg 32720568  T
Q  128 acagcttatatttccaagatagaaatttttatttatagattcctt 172  Q
    |||| |||||||| ||||| ||||| || |||| |||||||||||    
T  32720567 acagtttatattttcaagaaagaaaattctattaatagattcctt 32720523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 43652612 - 43652470
Alignment:
Q  32 aggagaatgttaaccagggccc-cggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 130  Q
    ||||||||||||||||| |||  |||| |||  ||||||||||||||||||||||||| || |||||||||||||||||||||  | ||||||| |||||    
T  43652612 aggagaatgttaaccagtgccttcgggacatccgttaagcaccaaatgaagtaagtttctactaaaaagtaatgtaattattatctgataaaaaatgaca 43652513  T
Q  131 gcttatatttccaagatagaaatttttatttatagattccttaa 174  Q
    | |||||||||||||||||||| |||||||||||||||||||||    
T  43652512 gattatatttccaagatagaaa-ttttatttatagattccttaa 43652470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 44041415 - 44041315
Alignment:
Q  84 agtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 183  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||| |||||||||||||    
T  44041415 agtttatattaaaaagtaatgtaattattacttaataaaaagtgacagtttatattaccaagacagaaaattctatttatagattcattaaccagtgccc 44041316  T
Q  184 c 184  Q
    |    
T  44041315 c 44041315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 65 - 184
Target Start/End: Complemental strand, 17109644 - 17109525
Alignment:
Q  65 ttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttata 164  Q
    |||| ||| |||| |||||| ||||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||||| || ||||||||    
T  17109644 ttaaacactaaataaagtaaatttttattaaaaagttatgtaattattacttaataaaatgttacagtttatatttccaagatagaaaattctatttata 17109545  T
Q  165 gattccttaaccagtgcccc 184  Q
     ||| ||||||| |||||||    
T  17109544 aatttcttaacccgtgcccc 17109525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 23208285 - 23208143
Alignment:
Q  32 aggagaatgttaaccagggccccgggg-cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 130  Q
    ||||||||||||||| | ||||| ||| ||||||||||  ||||||| || || ||||||||||||||||||||||||||   |||||||||||||||||    
T  23208285 aggagaatgttaaccggtgcccccgggacattggttaaataccaaataaaatacgtttttattaaaaagtaatgtaatta---cttaataaaaagtgaca 23208189  T
Q  131 gcttatatttccaagatagaaatttttatttatagattccttaacc 176  Q
    | |||||||| ||||| ||||| || |||||||||||| |||||||    
T  23208188 gtttatattttcaagacagaaaattctatttatagatttcttaacc 23208143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 43014611 - 43014761
Alignment:
Q  29 ataaggagaatgttaaccagggccc--cggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaat---tattacttaataaaa 123  Q
    |||||||||||||||| ||| ||||  |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||   ||||||| ||| |||    
T  43014611 ataaggagaatgttaatcagtgcccttcggggcattgattaagcaccaaataaagtaagtttttgttaaaaagtaatgtaattactattactaaat-aaa 43014709  T
Q  124 agtgacagcttatatttccaagatagaaatttttatttatagattccttaac 175  Q
    |||||||  |||||||||||||| ||||| || |||||||| |||| |||||    
T  43014710 agtgacaatttatatttccaagacagaaaattatatttataaattctttaac 43014761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 35322016 - 35322129
Alignment:
Q  68 agcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagat 167  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||  | ||| || |||||||||||    
T  35322016 agcaccaaaagaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga-agtttatatttctaag--acaaaattctatttatagat 35322112  T
Q  168 tccttaaccagtgcccc 184  Q
    |  ||||||| ||||||    
T  35322113 tttttaaccaatgcccc 35322129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 36258672 - 36258782
Alignment:
Q  56 gggcattggttaagcaccaaatgaagtaagtttttattaaaa-agtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 154  Q
    |||||| |||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||  ||||||||| |||| ||||| |    
T  36258672 gggcatgggttaaacaccaaataaagtaagtttttattaaaaaagtaatgtaatgattacttaataaaaaatgacattttatatttctaagacagaaaat 36258771  T
Q  155 tttatttatag 165  Q
    | |||||||||    
T  36258772 tctatttatag 36258782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 49710937 - 49711062
Alignment:
Q  53 ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaa 152  Q
    |||| |||||| ||||||||||||| || ||||||||||||||||| |||| ||||||||| || ||||||| | |||  ||||||||| |||| |||||    
T  49710937 ccggagcattgattaagcaccaaataaaataagtttttattaaaaattaatataattatta-tttataaaaaataacattttatatttctaagacagaaa 49711035  T
Q  153 tttttatttatagattccttaaccagtg 180  Q
     || ||||||||||||||||||||||||    
T  49711036 -ttctatttatagattccttaaccagtg 49711062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 52992414 - 52992546
Alignment:
Q  30 taaggagaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 129  Q
    |||||||||||||||||||   ||| |  ||||||||||||||||||| |||||| ||||||  ||||| ||||||||||||||| ||||||||| |||     
T  52992414 taaggagaatgttaaccagtaaccccga-cattggttaagcaccaaataaagtaattttttaccaaaaaataatgtaattattac-taataaaaaatgat 52992511  T
Q  130 agcttatatttccaagatagaaatttttatttata 164  Q
    || |||||||| ||| | ||||| |||||||||||    
T  52992512 agtttatattttcaaaacagaaaattttatttata 52992546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 168
Target Start/End: Complemental strand, 47877393 - 47877284
Alignment:
Q  59 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 158  Q
    ||||||||| ||||||||||||  || ||||||||||||| || ||||||||||| |||||||||| ||| || ||||||||  || ||| ||| |||||    
T  47877393 cattggttatgcaccaaatgaaacaaatttttattaaaaaatagtgtaattattatttaataaaaaatgatagtttatatttttaaaatataaaatttta 47877294  T
Q  159 tttatagatt 168  Q
    ||||||||||    
T  47877293 tttatagatt 47877284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 48338807 - 48338928
Alignment:
Q  56 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 154  Q
    ||||| |||||||||| |||||  |||||||||||||| |||||||  |||||| ||||||| || |||| | ||| ||||||||||||||||| |||||    
T  48338807 gggcaatggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacatcttatatttccaagata-aaatt 48338905  T
Q  155 tttatttatagattccttaacca 177  Q
    | |||||||| |||| |||||||    
T  48338906 tctatttataaattctttaacca 48338928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 32961149 - 32961246
Alignment:
Q  30 taaggagaatgttaaccagggccccggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 126  Q
    |||||||||||||||  || |||||||||||||||||||||| | ||| || ||||| ||||||||||||||  |||||| |||| ||| ||||||||    
T  32961149 taaggagaatgttaattagtgccccggggcattggttaagcagctaaaagaggtaagattttattaaaaagtggtgtaataattagttagtaaaaagt 32961246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 20585772 - 20585888
Alignment:
Q  30 taaggagaatgttaaccagggccccg-gggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg 127  Q
    ||||||||||||||||||| |||||  ||||||| |||||| | | ||| || ||||| ||||||||||||||  |||||| |||| ||||| ||||||     
T  20585772 taaggagaatgttaaccagtgcccctagggcattcgttaagtaactaaaagaggtaagattttattaaaaagtggtgtaataattagttaatcaaaagta 20585871  T
Q  128 acagcttatatttccaa 144  Q
    |||| ||||||||||||    
T  20585872 acagtttatatttccaa 20585888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 49419139 - 49419063
Alignment:
Q  87 ttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttat 163  Q
    |||||||||||||| |||||||||||| ||||||||||||||||  ||||||||| || | ||||| || |||||||    
T  49419139 ttttattaaaaagttatgtaattattagttaataaaaagtgacaatttatatttctaatacagaaaattctatttat 49419063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 55446750 - 55446839
Alignment:
Q  78 gaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattc 169  Q
    ||||||||||||||| |||||||  |||||| ||||||| || |||||| ||| ||||||||||||||| | |||||||||||| |||||||    
T  55446750 gaagtaagtttttat-aaaaagttgtgtaatcattactttattaaaagtaacatcttatatttccaagaca-aaatttttatttgtagattc 55446839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 38359097 - 38359168
Alignment:
Q  111 ttacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 183  Q
    |||||| || |||| | ||| |||||||||| |||||| |||||||||||||||||||||||||||| |||||    
T  38359097 ttactttatcaaaattaacatcttatatttctaagata-aaatttttatttatagattccttaaccattgccc 38359168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 4020116 - 4020222
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 178  Q
    |||||||||||||| ||||| |  |||||| |||||||||| |||| | |||  |||||||| ||||| | |||||| ||||| |||||||||||||||     
T  4020116 aagtaagtttttatgaaaaaattgtgtaataattacttaatcaaaattaacattttatattttcaagaca-aaatttctatttgtagattccttaaccat 4020214  T
Q  179 tgccccga 186  Q
    || |||||    
T  4020215 tgtcccga 4020222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 48252351 - 48252269
Alignment:
Q  94 aaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    ||||||| |||| ||||||| ||| | |||||| | | ||||||||| ||||||| || |||||||||||||||||||||||||    
T  48252351 aaaaagtgatgtcattattatttactcaaaagtcaaaacttatattttcaagata-aattttttatttatagattccttaacca 48252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 635824 - 635703
Alignment:
Q  56 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 154  Q
    |||||||||||||||| |||||  |  |||||||||||| ||||||  |||||| |||| ||||| |||||| ||| ||||| | | ||||| | |||||    
T  635824 gggcattggttaagcatccaaaacatataagtttttattgaaaagttgtgtaatcattatttaatcaaaagtaacatcttatttattcaagaca-aaatt 635726  T
Q  155 tttatttatagattccttaacca 177  Q
    | ||||| |||||||||||||||    
T  635725 tctatttgtagattccttaacca 635703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 35990577 - 35990535
Alignment:
Q  190 ataataatttgagaaaataaaattattgaatgtaaccacatgt 232  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  35990577 ataataatttgagaaaataaaataactgaatgtaaccacatgt 35990535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 28709661 - 28709558
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 178  Q
    |||||||||| ||| |||||||  | |||| |||| || || |||||| |||  |||||||| ||||||| |||||| ||||||||||||| |||||||     
T  28709661 aagtaagtttctataaaaaagttgtataatcattatttgatcaaaagtaacattttatattttcaagata-aaatttctatttatagattctttaaccat 28709563  T
Q  179 tgccc 183  Q
    |||||    
T  28709562 tgccc 28709558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 1712019 - 1711922
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    |||||| |||||| |||||| || | ||||||||||||| | ||| || ||| ||||||||| ||||| | |||||| || || |||||||||||||||    
T  1712019 aagtaaatttttaataaaaaatagtataattattacttagtcaaatgtaacatcttatattttcaagaca-aaatttataattttagattccttaacca 1711922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 2379699 - 2379662
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattactt 116  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  2379699 aagtaagtttttattaaaaagtagtgtaattcttactt 2379662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 35060572 - 35060609
Alignment:
Q  194 taatttgagaaaataaaatt-attgaatgtaaccacat 230  Q
    |||||||||||||||||||| |||||||||||||||||    
T  35060572 taatttgagaaaataaaattgattgaatgtaaccacat 35060609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 49261822 - 49261902
Alignment:
Q  103 tgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcccc 184  Q
    |||||||||||||  || |||||| ||| ||||||||| ||||| | |||||| ||||| || ||| |||||||||||||||    
T  49261822 tgtaattattactctatcaaaagtaacatcttatatttacaagaca-aaatttctatttgtatatttcttaaccagtgcccc 49261902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 54801425 - 54801356
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagata 148  Q
    |||||||||||||| ||||| |  |||||||||||||| |  |||||| ||| ||||||||| |||||||    
T  54801425 aagtaagtttttatgaaaaaattgtgtaattattactttagcaaaagtaacatcttatattttcaagata 54801356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 42088735 - 42088767
Alignment:
Q  193 ataatttgagaaaataaaattattgaatgtaac 225  Q
    |||||||||||||||||||| ||||||||||||    
T  42088735 ataatttgagaaaataaaataattgaatgtaac 42088767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 22035703 - 22035857
Alignment:
Q  33 ggagaatgttaaccagggcc-ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacag 131  Q
    ||||||||||||| |  ||| ||||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  22035703 ggagaatgttaactaatgcctccggggcatcggttaagttccaaatgaagtaagtttttattaaaaaataatgtaattattacttattaaaaagtgacag 22035802  T
Q  132 cttatatttccaagatagaaatttttatttatagattccttaaccagtgccccga 186  Q
     |||||||||||||| ||||| || ||||||||||||| ||||||||||||||||    
T  22035803 tttatatttccaagacagaaaattctatttatagattcattaaccagtgccccga 22035857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 45907179 - 45907024
Alignment:
Q  30 taaggagaatgttaaccaggg-ccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 128  Q
    ||||||||||||||||||| | |||||||  ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45907179 taaggagaatgttaaccagtgtccccgggatattggttaagcataaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtga 45907080  T
Q  129 cagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 185  Q
    ||| |||||||| ||||| | |||  | |||||||||||||||||||| ||||||||    
T  45907079 cagtttatatttacaagaca-aaaaatctatttatagattccttaacccgtgccccg 45907024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 36636124 - 36636008
Alignment:
Q  58 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 157  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||| ||||||||||||| || |    
T  36636124 gcattggttaagcaccaaataaagtaagtttttattaaaaaataatgtaattattacttaataaaaggtgaccgtttatatctccaagatagaaaattct 36636025  T
Q  158 atttatagattccttaac 175  Q
    ||||||| ||||||||||    
T  36636024 atttata-attccttaac 36636008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 19689502 - 19689618
Alignment:
Q  63 ggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttattta 162  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||  |||||| || |||||||| ||||||||||| || ||||||    
T  19689502 ggttaaacaccaaatgaagtaagtttt-attaaaaagtaatgtaattattatttaatacgaagtgatagtttatatttacaagatagaaagttgtattta 19689600  T
Q  163 tagattccttaaccagtg 180  Q
    |||||||||||| |||||    
T  19689601 tagattccttaatcagtg 19689618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 8117587 - 8117444
Alignment:
Q  32 aggagaatgttaaccaggg-ccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 130  Q
    ||||||||||||| ||| | |||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |||||||||| | |||    
T  8117587 aggagaatgttaatcagtgaccccggggcattggttaaacgctaaatgaagtaagtttttattaaaaagtaatgtaattattatttaataaaaaataaca 8117488  T
Q  131 gcttatatttccaagatagaaatttttatttatagattccttaac 175  Q
      |||||||| ||||| | ||| || |||||||||||||| ||||    
T  8117487 atttatattttcaagacataaa-ttctatttatagattccataac 8117444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 16861675 - 16861797
Alignment:
Q  59 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 158  Q
    |||| ||||||||||||| ||| |||| |||||||||||||||||||||||| || |||||||||| |||||| |||||||||||||| | ||| || ||    
T  16861675 catttgttaagcaccaaaagaaataaggttttattaaaaagtaatgtaattaatatttaataaaaaatgacagtttatatttccaagacataaa-ttcta 16861773  T
Q  159 tttatagattccttaaccagtgcc 182  Q
    |||||||||| ||||||| |||||    
T  16861774 tttatagatttcttaaccggtgcc 16861797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 41434673 - 41434813
Alignment:
Q  31 aaggagaatgttaaccagggc-cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 129  Q
    ||||||||||||||||| ||| ||||| ||||||||||| ||| |||   ||||| ||||||||||||| |||||||||||||| || ||||||||||||    
T  41434673 aaggagaatgttaaccaaggctcccggagcattggttaaacactaaa---agtaaatttttattaaaaaataatgtaattattatttgataaaaagtgac 41434769  T
Q  130 agcttatatttccaagatagaaatttttatttatagattccttaa 174  Q
    || ||||||||| |||| ||||| || ||||||||||||| ||||    
T  41434770 agtttatatttctaagacagaaa-ttatatttatagattctttaa 41434813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 21798770 - 21798882
Alignment:
Q  34 gagaatgttaaccagggccccgggg-cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagc 132  Q
    ||||||||||| ||| ||| ||||| | |||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| |||| ||||||     
T  21798770 gagaatgttaaacagtgccgcgggggctttggttaagcaccaaaagaagtaa-tttttattaagaagtaatgtaattattacttaatgaaaaatgacagt 21798868  T
Q  133 ttatatttccaaga 146  Q
    ||||| ||||||||    
T  21798869 ttataattccaaga 21798882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 16563584 - 16563469
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    ||||||||| ||| |||| || |||||||||||||||||||||||||||||||| ||| | |||| | | || |||||||||||||||| ||| || |||    
T  16563584 attggttaaacactaaataaattaagtttttattaaaaagtaatgtaattattatttactgaaaaataatagtttatatttccaagataaaaaattctat 16563485  T
Q  160 ttatagattccttaac 175  Q
    ||||| ||| ||||||    
T  16563484 ttatacatttcttaac 16563469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 16602078 - 16602193
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    ||||||||| ||| |||| || |||||||||||||||||||||||||||||||| ||| | |||| | | || |||||||||||||||| ||| || |||    
T  16602078 attggttaaacactaaataaattaagtttttattaaaaagtaatgtaattattatttactgaaaaataatagtttatatttccaagataaaaaattctat 16602177  T
Q  160 ttatagattccttaac 175  Q
    ||||| ||| ||||||    
T  16602178 ttatacatttcttaac 16602193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 19777886 - 19778037
Alignment:
Q  30 taaggagaatgttaaccagggccccggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 128  Q
    ||||||||||||||||||| || || ||| |||| ||||||| | ||| || ||||| |||||||||| ||| ||||||| |||| |||||||||| | |    
T  19777886 taaggagaatgttaaccagtgctccagggtattgattaagcagctaaaagaggtaagattttattaaagagtgatgtaataattagttaataaaaaataa 19777985  T
Q  129 cagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 181  Q
    ||| |||||||| ||||||| |  ||| || || | |||||||||||||||||    
T  19777986 cagtttatattttcaagata-atttttctacttttggattccttaaccagtgc 19778037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 26203162 - 26203047
Alignment:
Q  32 aggagaatgttaaccagggccccggggcattggttaagc-accaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 130  Q
    ||||||||||||||||| ||||| ||||||||||||||| || ||| || ||||  ||||||||||||||  |||||| |||| ||| | |||||||||     
T  26203162 aggagaatgttaaccagtgcccccgggcattggttaagcaactaaaagaggtaaaattttattaaaaagtggtgtaataattagttagtcaaaagtgact 26203063  T
Q  131 gcttatatttccaaga 146  Q
    | ||| ||||||||||    
T  26203062 ggttagatttccaaga 26203047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 186
Target Start/End: Original strand, 37928297 - 37928424
Alignment:
Q  59 cattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 157  Q
    |||||||||| || |||||  |||||||||||||| |||||||  |||||| ||||||| || |||| | |||  |||||||| ||||||| |||||| |    
T  37928297 cattggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacattttatattttcaagata-aaatttat 37928395  T
Q  158 atttatagattccttaaccagtgccccga 186  Q
    |||||||||||| ||||||| ||| ||||    
T  37928396 atttatagattctttaaccattgctccga 37928424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 7833889 - 7833772
Alignment:
Q  31 aaggagaatgttaaccagggccccg-gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 128  Q
    |||||||||||||||||  |||||| |||||||||||||||| |||||  ||||||| ||||||||||||||| || ||| |||| ||  | |||| | |    
T  7833889 aaggagaatgttaaccaatgccccgagggcattggttaagcagccaaaacaagtaagattttattaaaaagtagtgcaataattagttggtcaaaaataa 7833790  T
Q  129 cagcttatatttccaaga 146  Q
    ||| |||||||| |||||    
T  7833789 cagtttatattttcaaga 7833772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 31487802 - 31487702
Alignment:
Q  82 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 181  Q
    ||||||||||  ||||| |  |||||||||||||||||||||| | ||| ||||||||||||||||| |||||| |||| ||| ||| | |||||| |||    
T  31487802 taagtttttaagaaaaaattgtgtaattattacttaataaaaaataacatcttatatttccaagata-aaatttctattaataaattacctaaccaatgc 31487704  T
Q  182 cc 183  Q
    ||    
T  31487703 cc 31487702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 27364664 - 27364716
Alignment:
Q  133 ttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 185  Q
    |||||||||||||| | ||| || |||||||||||||||||||||||||||||    
T  27364664 ttatatttccaagacataaaattctatttatagattccttaaccagtgccccg 27364716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 186
Target Start/End: Complemental strand, 39786570 - 39786441
Alignment:
Q  57 ggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattt 155  Q
    ||||||||||||||| |||||  || ||| |||||  | ||||||| ||||||||||| ||||| |||||| | | ||||||||| ||||| | |  |||    
T  39786570 ggcattggttaagcaaccaaaacaaataacttttttattaaaagtagtgtaattattatttaatcaaaagttaaaacttatattttcaagaca-agtttt 39786472  T
Q  156 ttatttatagattccttaaccagtgccccga 186  Q
     ||||||||||||||||||||| || |||||    
T  39786471 ctatttatagattccttaaccattgtcccga 39786441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 3624339 - 3624254
Alignment:
Q  60 attggttaagcac-caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaa 144  Q
    ||||||||||||  |||| |||||||| ||||||||||||||  |||||| |||| || ||||||| | | |||||||||||||||    
T  3624339 attggttaagcattcaaaggaagtaagattttattaaaaagtggtgtaataattatttgataaaaaataaaagcttatatttccaa 3624254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 183
Target Start/End: Complemental strand, 47445500 - 47445348
Alignment:
Q  32 aggagaatgttaaccagggccccg-gggcattggttaagc-accaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 129  Q
    |||||||| ||||| || |||||  ||||||||||||||| |||| |  | |||||||||||| ||||| || | |||||||||||| || |||||| |     
T  47445500 aggagaatattaactagtgccccatgggcattggttaagcgaccagaacatgtaagtttttataaaaaaatagtttaattattacttcatcaaaagtaaa 47445401  T
Q  130 agcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 183  Q
    | ||||||||| ||| |   |||||| ||||||  |||||||||||||||||||    
T  47445400 aacttatattttcaa-agcaaaatttctatttaaggattccttaaccagtgccc 47445348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 19677037 - 19677116
Alignment:
Q  103 tgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 183  Q
    |||||| |||||||||| |||||| ||| ||||||||| ||||| | |||||| ||||| | ||||||||||||| |||||    
T  19677037 tgtaatcattacttaatcaaaagtaacatcttatattttcaagaca-aaatttctatttgtcgattccttaaccaatgccc 19677116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 16979936 - 16980027
Alignment:
Q  56 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaaga 146  Q
    |||||||||||||||| |||||  |||||| ||||||| |||||||  ||| |||||||||  || |||||| ||| ||||||||| |||||    
T  16979936 gggcattggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaacatcttatattttcaaga 16980027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 30775013 - 30774946
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaaga 146  Q
    |||||| |||||| ||||||| | |||||| ||||| | |||||| |||||||||||||||| |||||    
T  30775013 aagtaaatttttaataaaaagcagtgtaatcattacatgataaaatgtgacagcttatattttcaaga 30774946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 9483391 - 9483433
Alignment:
Q  190 ataataatttgagaaaataaaattattgaatgtaaccacatgt 232  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||    
T  9483391 ataataatttgagaaaatagaataattgaatgtaaccatatgt 9483433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 16685729 - 16685854
Alignment:
Q  60 attggttaagca-ccaaatgaagtaagtttttatt-aaaaagtaatgtaattattacttaataaaa-agtgacagcttatatttccaagatagaaatttt 156  Q
    |||||||||||| |||||  ||||||||||||||| |||||||  |||||| ||||||| || ||| ||| ||| |||||||||| |||| | ||| ||     
T  16685729 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagaca-aaacttc 16685827  T
Q  157 tatttatagattccttaaccagtgccc 183  Q
    ||||  ||||||||||||||| |||||    
T  16685828 tattagtagattccttaaccaatgccc 16685854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 17659965 - 17660090
Alignment:
Q  60 attggttaagca-ccaaatgaagtaagtttttatt-aaaaagtaatgtaattattacttaataaaa-agtgacagcttatatttccaagatagaaatttt 156  Q
    |||||||||||| |||||  ||||||||||||||| |||||||  |||||| ||||||| || ||| ||| ||| |||||||||| |||| | ||| ||     
T  17659965 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagaca-aaacttc 17660063  T
Q  157 tatttatagattccttaaccagtgccc 183  Q
    ||||  ||||||||||||||| |||||    
T  17660064 tattagtagattccttaaccaatgccc 17660090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 21454292 - 21454242
Alignment:
Q  190 ataataatttgagaaaataaaattattgaatgtaaccacatgtcttagtgt 240  Q
    |||||||||||| |||||  | ||||||||||||||||||||||| |||||    
T  21454292 ataataatttgaaaaaatggatttattgaatgtaaccacatgtctcagtgt 21454242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 32279742 - 32279705
Alignment:
Q  86 tttttattaaaaagtaatgtaattattacttaataaaaa 124  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  32279742 tttttattaaaaa-taatgtaattattacttaataaaaa 32279705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 1359708 - 1359796
Alignment:
Q  94 aaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 183  Q
    |||||||||||||||  ||| ||| | |||||||| | ||||| ||||||||| | |||||| |||| || ||||||||||||| |||||    
T  1359708 aaaaagtaatgtaatcgttatttagtcaaaagtgagaccttatgtttccaagaca-aaatttctattcatggattccttaaccaatgccc 1359796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 19889716 - 19889869
Alignment:
Q  33 ggagaatgttaaccagggccc-cggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacag 131  Q
    |||||||||||| ||| |||  |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||     
T  19889716 ggagaatgttaatcagtgccttcggggcattggttaagcatcaaatgaagtaagttttcattaaaaagtaatgtaattattacttaataaaaggtgacat 19889815  T
Q  132 cttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 185  Q
     |||||||||||| | | ||| || |||||||||||| ||||||||||||||||    
T  19889816 attatatttccaaaacataaaattctatttatagatttcttaaccagtgccccg 19889869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 170
Target Start/End: Complemental strand, 21646618 - 21646482
Alignment:
Q  34 gagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagc 132  Q
    ||||||||||||||| ||||  |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||      
T  21646618 gagaatgttaaccagtgccctaggggcattggttaaacaccaaatgaagtaagttttcattaaaaagtaatgtaattattacttaat-aaaagtgacact 21646520  T
Q  133 ttatatttccaagatagaaatttttatttatagattcc 170  Q
    |||||||||||||| ||||| || ||| ||||||||||    
T  21646519 ttatatttccaagacagaaaattctatgtatagattcc 21646482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 11610554 - 11610471
Alignment:
Q  31 aaggagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattatta 113  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  11610554 aaggagaatgttaaccagtgcccccggggcattggttaagcaccaaatgaagtaagttttcattaaaaagtaatgcaattatta 11610471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 37913123 - 37913024
Alignment:
Q  55 ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 154  Q
    |||| |||||||||||| |||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||| | |||||||| ||||||| |||||    
T  37913123 ggggtattggttaagcatcaaaagaagtaagtttttattaaaaattaatgtgattattacttgataaaaagtgacggtttatattttcaagataaaaatt 37913024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 18243857 - 18243787
Alignment:
Q  56 gggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 126  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  18243857 gggcattggttaagcaccaaataaagtaagtttttattaaaaagtaatataattattatttaataaaaagt 18243787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 4141633 - 4141730
Alignment:
Q  54 cggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaa 152  Q
    |||||||||| ||||||| ||||| |||||| |||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||| |||| |||||    
T  4141633 cggggcattgattaagcatcaaataaagtaaatttttattaaaa-gtaatgtaattattactgaataaaaagtgacggtttatatttctaagagagaaa 4141730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 40574288 - 40574134
Alignment:
Q  31 aaggagaatgttaaccagggccccg-gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 128  Q
    |||||||||| ||||||| |||||  ||||| |||||||||| |||||  |||||  |||| || |||||||  |||||||||||||  || |||||| |    
T  40574288 aaggagaatgctaaccagtgccccaagggcaatggttaagcatccaaaacaagtacattttcatgaaaaagttgtgtaattattactctatcaaaagtta 40574189  T
Q  129 cagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcccc 184  Q
    ||  |||||||||||||| | |||||| ||||| ||||||||||||||||||||||    
T  40574188 cattttatatttccaagaca-aaatttctatttgtagattccttaaccagtgcccc 40574134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 1870638 - 1870486
Alignment:
Q  31 aaggagaatgttaaccagggccc-cggggcattggttaagcaccaaatg-aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 128  Q
    |||||||||| ||| ||| |||| |||||||||||||||||| ||||   |||||| ||||||| ||||| |  ||||||||||||||||| |||||| |    
T  1870638 aaggagaatgctaaacagtgccctcggggcattggttaagcaacaaaaacaagtaactttttataaaaaaatg-tgtaattattacttaatcaaaagtca 1870540  T
Q  129 cagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 183  Q
     ||||||||||| ||||| | || ||| ||||||||| ||||||||||| |||||    
T  1870539 aagcttatattttcaagaca-aattttctatttatagtttccttaaccattgccc 1870486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 23788494 - 23788402
Alignment:
Q  86 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagt 179  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |  |||||||| ||| ||| ||| || ||||||||||||  |||||||||    
T  23788494 tttttattaaaaagtaatgtaattattacttaataaaaaatgataatttatattttcaaaatataaa-ttctatttatagattttttaaccagt 23788402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 32345477 - 32345591
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    ||||||||| ||  |||| |||||||||||||| ||||| |||| ||||||||| |||||||||| |||||| ||||||||  |||| ||||| || |||    
T  32345477 attggttaaacaataaataaagtaagtttttatcaaaaa-taatataattattatttaataaaaaatgacagtttatatttttaagacagaaaattctat 32345575  T
Q  160 ttatagattccttaac 175  Q
    |||||  |||||||||    
T  32345576 ttataatttccttaac 32345591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 13738510 - 13738393
Alignment:
Q  60 attggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 158  Q
    |||||||||||| |||||  |||||||||||||| ||||| |  |||||| ||||||| || | |||| ||| ||||||||| ||| | | |||||||||    
T  13738510 attggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactttatcagaagtaacatcttatattttcaaaaca-aaattttta 13738412  T
Q  159 tttatagattccttaacca 177  Q
    |||||||||||||||||||    
T  13738411 tttatagattccttaacca 13738393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 18243364 - 18243299
Alignment:
Q  115 ttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtg 180  Q
    |||||||||||||| || |||||||||||| | | ||| |||||||||||||||||||||||||||    
T  18243364 ttaataaaaagtgaaagtttatatttccaaaacaaaaaattttatttatagattccttaaccagtg 18243299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 19995041 - 19994908
Alignment:
Q  52 cccggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagataga 150  Q
    |||||||||| |||||||||   ||| || |||||  ||||||||||||| ||||||| |||| ||| | |||||| |||| |||||||||||||||| |    
T  19995041 cccggggcatcggttaagcagttaaaagaggtaagcatttattaaaaagtgatgtaataattagttagtcaaaagtaacagtttatatttccaagata-a 19994943  T
Q  151 aatttttatttatagattccttaaccagtgccccg 185  Q
      ||| ||||| | ||||| |||||||||||||||    
T  19994942 tttttctatttttggattctttaaccagtgccccg 19994908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 27896481 - 27896543
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttc 141  Q
    ||||||||||| ||||||||||  ||||||||||||| ||| |||||| ||||||||||||||    
T  27896481 aagtaagttttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttc 27896543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 35501370 - 35501483
Alignment:
Q  32 aggagaatgttaaccagggccccggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 130  Q
    ||||||||||||| || | | |||||||||||||||||||   ||| |||||||| |||||||||||||| ||||||| |||| ||| | |||| | | |    
T  35501370 aggagaatgttaatcatgcctccggggcattggttaagcaggtaaaagaagtaagattttattaaaaagtgatgtaataattagttagtcaaaaataaaa 35501469  T
Q  131 gcttatatttccaa 144  Q
    | ||||||||||||    
T  35501470 gtttatatttccaa 35501483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 23760706 - 23760588
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    ||||||||||||| | |  |||||| ||||  ||||||||||||||||||||||||| ||||||| | | || ||||||||  |||| | ||| || |||    
T  23760706 attggttaagcactacaaaaagtaaattttatttaaaaagtaatgtaattattacttgataaaaa-taagagtttatatttttaagacataaa-ttatat 23760609  T
Q  160 ttatagattccttaaccagtg 180  Q
    |||||||||| ||||||||||    
T  23760608 ttatagattcgttaaccagtg 23760588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 44013877 - 44013918
Alignment:
Q  191 taataatttgagaaaataaaattattgaatgtaaccacatgt 232  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  44013877 taataattttagaaaataaaattattgaatgtaatcacatgt 44013918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 13717196 - 13717290
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaac 175  Q
    ||||||||||| || ||||||| |||||||||||||||| |||||| | |||  |||||||| ||||| | |||||| ||||| || ||||||||||    
T  13717196 aagtaagttttcatcaaaaagttatgtaattattacttattaaaaa-taacattttatattttcaagaca-aaatttctatttgtatattccttaac 13717290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 13835868 - 13835951
Alignment:
Q  93 taaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    |||||| || |||||||||||||||||||||||| | | ||||||||| ||||| || | ||| ||||||||| || ||||||||    
T  13835868 taaaaaatagtgtaattattacttaataaaaagtcaaaacttatattttcaagacag-attttctatttatagttttcttaacca 13835951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 16498253 - 16498137
Alignment:
Q  30 taaggagaatgttaaccagggcc-ccggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg 127  Q
    |||||| |||||||||||| ||| || ||||||||||||||||   ||| || ||||| |||||||||||||| ||||||| |||| ||| | |||| |     
T  16498253 taaggacaatgttaaccagtgccaccagggcattggttaagcagttaaaagaggtaagattttattaaaaagtgatgtaataattagttagtcaaaatta 16498154  T
Q  128 acagcttatatttccaa 144  Q
    |||  ||||||||||||    
T  16498153 acaatttatatttccaa 16498137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 5444573 - 5444483
Alignment:
Q  93 taaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcccc 184  Q
    ||||||||  |||| |||||||||||| |||||| | | ||||||||| ||||| | |||||||||||||||| ||| |||| || ||||||    
T  5444573 taaaaagttgtgtatttattacttaattaaaagtcaaaacttatattttcaagaca-aaatttttatttatagtttctttaatcattgcccc 5444483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 8580506 - 8580597
Alignment:
Q  56 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaaga 146  Q
    |||||||||||||||| |||||  |||| |||||| || |||||    | ||||||||||||||| |||||| ||| |||||||||||||||    
T  8580506 gggcattggttaagcatccaaagtaagttagttttcatgaaaaatgtgtctaattattacttaatcaaaagtaacatcttatatttccaaga 8580597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 11610467 - 11610374
Alignment:
Q  87 ttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 181  Q
    |||| |||| || ||||| |||||||| ||||||||| |||||  ||||||||||| ||||| |||    |||||||||||||||||| ||||||    
T  11610467 tttttttaacaaataatgcaattattatttaataaaa-gtgactccttatatttccgagataaaaaagactatttatagattccttaatcagtgc 11610374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 3103573 - 3103532
Alignment:
Q  191 taataatttgagaaaataaaattattgaatgtaaccacatgt 232  Q
    ||||||||||||||||||| || ||||||||||||| |||||    
T  3103573 taataatttgagaaaataagataattgaatgtaaccgcatgt 3103532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 4557589 - 4557693
Alignment:
Q  79 aagtaagtttttattaaaaa-gtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    |||||||||||||| ||||| ||   ||||| |||||| ||| |||| | ||  ||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  4557589 aagtaagtttttatgaaaaaagttgagtaataattactcaatcaaaaataacttcttatatttccaagata-aaatttctatttgtagattctttaacca 4557687  T
Q  178 gtgccc 183  Q
     |||||    
T  4557688 ttgccc 4557693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 44818465 - 44818428
Alignment:
Q  102 atgtaattattacttaataaaaagtgacagcttatatt 139  Q
    |||||||||||||||||||||||||||||  |||||||    
T  44818465 atgtaattattacttaataaaaagtgacaatttatatt 44818428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 19606364 - 19606296
Alignment:
Q  81 gtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatag 149  Q
    ||||| ||||||||||||||  |||||| |||| || || |||||| |||| |||||||||||| ||||    
T  19606364 gtaagattttattaaaaagtggtgtaataattagttcatcaaaagtaacagtttatatttccaaaatag 19606296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 41508544 - 41508584
Alignment:
Q  191 taataatttgagaaaataaaattattgaatgtaaccacatg 231  Q
    |||||||||||||||||| ||| |||||||||||| |||||    
T  41508544 taataatttgagaaaatagaataattgaatgtaactacatg 41508584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 28462665 - 28462534
Alignment:
Q  52 cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaa 151  Q
    |||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| | ||    
T  28462665 cccgggacattggttaaacaccaaatgaagtaagtttttattaaaa-gtaatgtaattattacttaataaaaagtgatagtttatatttccaagacaaaa 28462567  T
Q  152 atttttatttatagattccttaaccagtgcccc 184  Q
    | || ||||||||||||| ||||||||||||||    
T  28462566 aattctatttatagattctttaaccagtgcccc 28462534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 900381 - 900237
Alignment:
Q  28 aataaggagaatgttaaccagggc-cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 126  Q
    ||||||||||||||||||| | || ||| ||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |    
T  900381 aataaggagaatgttaaccggtgctcccagggcattggttaaacaccaaataaagtaagtttttattaaaaagtaatataattattacttaataaaaaat 900282  T
Q  127 gacagcttatatttccaagatagaaatttttatttatagattcct 171  Q
    ||||| ||| |||| ||||| ||||| || ||||||||| |||||    
T  900281 gacagtttaaattttcaagacagaaaattatatttatagtttcct 900237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 37919365 - 37919499
Alignment:
Q  28 aataaggagaatgttaaccagggcc-ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 126  Q
    |||||||||||| |||||| | ||| |||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |    
T  37919365 aataaggagaatattaaccggtgcctccggagcattggttaagcaccgaataaagtaaatttttattaaaaagtaatgtaattattacttaataaaaaat 37919464  T
Q  127 gacagcttatatttccaagatagaaatttttattt 161  Q
    ||||| |||||||| ||| | | ||| ||||||||    
T  37919465 gacagtttatattttcaaaacaaaaaattttattt 37919499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 58 - 184
Target Start/End: Complemental strand, 39065650 - 39065527
Alignment:
Q  58 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 157  Q
    ||||||||||||||| ||| ||||||| ||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||  |||| ||||| || |    
T  39065650 gcattggttaagcactaaaagaagtaaatttttattaaaaaataatgtcattattacttgataaaaagtgacagtttatatttttaagacagaaa-ttct 39065552  T
Q  158 atttatagattccttaaccagtgcccc 184  Q
    |||||||||  ||||||||||||||||    
T  39065551 atttataga--ccttaaccagtgcccc 39065527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 39209477 - 39209356
Alignment:
Q  59 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 158  Q
    |||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||| ||||| ||||||||||| |||||||||||| | ||||| || ||    
T  39209477 cattggttaagcaccaaacgaagtaaatttttattaaaaagtgatgt-attattatttaat-aaaagtgacagtttatatttccaaaacagaaaattcta 39209380  T
Q  159 tttatagattccttaaccagtgcc 182  Q
    |||||| |||||||||| ||||||    
T  39209379 tttataaattccttaactagtgcc 39209356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 39534275 - 39534137
Alignment:
Q  38 atgttaaccagggccccg-gggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttat 136  Q
    ||||||||||| |||||  |||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||  ||||||| ||||    
T  39534275 atgttaaccagtgcccccagggcgttagttaagcaccaaatgaggtaaatttttattaaaaagtaatgtaattattacttgataaagggtgacagtttat 39534176  T
Q  137 atttccaagatagaaatttttatttatagattccttaacc 176  Q
    |||| ||||| ||||| || || |||||||||| ||||||    
T  39534175 attttcaagacagaaa-ttctaattatagattctttaacc 39534137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 58 - 184
Target Start/End: Complemental strand, 41675787 - 41675662
Alignment:
Q  58 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 157  Q
    ||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||| || |||||||| ||| | ||||| || |    
T  41675787 gcattggttaagcaccaaaagaagtaaatttttattaaaaagaaatataattattacttgataaaaaatgatagtttatattttcaaaacagaaa-ttct 41675689  T
Q  158 atttatagattccttaaccagtgcccc 184  Q
    |||| |||||||||||| | |||||||    
T  41675688 atttgtagattccttaatcggtgcccc 41675662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 59 - 184
Target Start/End: Original strand, 29795503 - 29795627
Alignment:
Q  59 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 158  Q
    |||| ||||||||||||| ||| ||||||||| |||||||||||||||||||||| || |||||||||||||| ||||| ||  |||||| ||| || ||    
T  29795503 cattcgttaagcaccaaaagaattaagtttttgttaaaaagtaatgtaattattaattgataaaaagtgacagtttatagttttaagata-aaaattcta 29795601  T
Q  159 tttatagattccttaaccagtgcccc 184  Q
    ||| | ||||||||||||| ||||||    
T  29795602 tttttggattccttaaccaatgcccc 29795627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 30924829 - 30924948
Alignment:
Q  58 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 157  Q
    |||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| || ||||||||| | ||||| ||||| || | ||| || |    
T  30924829 gcatcggttaagcaccaaaagaagtaagtttttgttagaaagtaatgtaattattacttgatgaaaagtgacggattatagttccatgacaaaaaattct 30924928  T
Q  158 atttatagattccttaacca 177  Q
    |||| | |||||||||||||    
T  30924929 atttttggattccttaacca 30924948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 20821903 - 20821969
Alignment:
Q  74 aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatattt 140  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  20821903 aaataaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacaatttatattt 20821969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 10029159 - 10029277
Alignment:
Q  59 cattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 157  Q
    ||||||||||||| |||||| |||||| ||||||| |||||||  | |||| ||||||| || |||||| ||| ||||||||||||||||| ||||||||    
T  10029159 cattggttaagcatccaaatcaagtaaatttttatgaaaaagttgtataatcattacttgatcaaaagtaacatcttatatttccaagata-aaattttt 10029257  T
Q  158 atttatagattccttaacca 177  Q
    |||| |||||| ||||||||    
T  10029258 atttgtagatttcttaacca 10029277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 20542381 - 20542508
Alignment:
Q  56 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 154  Q
    |||||||||||||||| |||||   ||||||||||||  |||||    |||||| |||||||||| |||||| ||| |||||||||||||||  ||||||    
T  20542381 gggcattggttaagcatccaaaacgagtaagtttttaagaaaaaagtgtgtaatcattacttaatcaaaagtaacatcttatatttccaaga-cgaaatt 20542479  T
Q  155 tttatttatagattccttaaccagtgccc 183  Q
    | ||||| ||||||||||||||| |||||    
T  20542480 tctatttgtagattccttaaccaatgccc 20542508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 42654596 - 42654699
Alignment:
Q  70 caccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattc 169  Q
    |||||||| |||||||||||| || ||||| ||| |||||||||||||||||||| ||| || ||||||||| |||| | ||| ||||||| ||||||||    
T  42654596 caccaaataaagtaagtttttttttaaaagcaatataattattacttaataaaaaatgatagtttatatttctaagaca-aaaattttattgatagattc 42654694  T
Q  170 cttaa 174  Q
     ||||    
T  42654695 tttaa 42654699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 41726914 - 41727011
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    |||||||||||||| |||||   ||||||| ||||||| ||||||| | |||  |||||||||||||| | |||||||||||| |||||||||||||||    
T  41726914 aagtaagtttttatgaaaaaactatgtaatcattactttataaaaaataacattttatatttccaagaca-aaatttttatttgtagattccttaacca 41727011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 25347643 - 25347737
Alignment:
Q  58 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 154  Q
    |||||||||||| ||||||  |||||||||||| || ||||||||  ||||||||||||||| ||||||||||  ||||| |||||||||| |||||    
T  25347643 gcattggttaagaaccaaaaaaagtaagtttttgttgaaaagtaa-ataattattacttaatgaaaagtgaca-tttatagttccaagatataaatt 25347737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 38362320 - 38362264
Alignment:
Q  58 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattac 114  Q
    |||||||||||||| ||||| |||||| |||||||||||||| ||||||||||||||    
T  38362320 gcattggttaagcatcaaataaagtaaatttttattaaaaagcaatgtaattattac 38362264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 14110708 - 14110642
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaaga 146  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||||||||| | ||||||||| ||||    
T  14110708 aagtaaatttttattaaaaagttatgtaattattactt-ataaaaagtgacggtttatatttctaaga 14110642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 35901563 - 35901414
Alignment:
Q  28 aataaggagaatgttaaccagggccccggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 126  Q
    |||| |||||||||||||| | |||   ||| |||||||||||| |||||  |||||||||||||| |||||||  || ||| |||| ||||| ||||||    
T  35901563 aatatggagaatgttaaccggtgccaaagggtattggttaagcatccaaaacaagtaagtttttatgaaaaagttgtgcaatcattatttaattaaaagt 35901464  T
Q  127 gacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
     ||| |||| |||| ||| | | |||||| ||||| |||||||||||||||    
T  35901463 aacatcttacattttcaaaaca-aaatttctatttgtagattccttaacca 35901414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 13873718 - 13873818
Alignment:
Q  82 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 181  Q
    ||||||||||| ||||| | ||| ||| |||||||||| |||| | ||| |||||||||| |||| | ||| ||||||||||||||||||||| || |||    
T  13873718 taagtttttatgaaaaaattatgcaatcattacttaattaaaaataacatcttatatttctaagaca-aaaattttatttatagattccttaatcattgc 13873816  T
Q  182 cc 183  Q
    ||    
T  13873817 cc 13873818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 38388490 - 38388610
Alignment:
Q  31 aaggagaatgttaaccagggcccc--ggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg 127  Q
    ||||| |||||||||||| ||||   ||||||| ||||||||| | ||| || ||||| |||||||||||||| ||||||| |||| ||| | ||||||     
T  38388490 aaggacaatgttaaccagtgccctcgggggcatcggttaagcagctaaaagaggtaagattttattaaaaagtgatgtaataattagttagtcaaaagta 38388589  T
Q  128 acagcttatatttccaagata 148  Q
    | || ||||||||||||||||    
T  38388590 atagtttatatttccaagata 38388610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 44649030 - 44648927
Alignment:
Q  82 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 181  Q
    |||||||| || |||||||  |||||| ||||||| || |||||| |||  |||||||| ||||| | |||||| ||||| ||||||||||||||| |||    
T  44649030 taagttttcatgaaaaagttgtgtaatcattactttatcaaaagtaacattttatattttcaagaca-aaatttctatttgtagattccttaaccattgc 44648932  T
Q  182 cccga 186  Q
    |||||    
T  44648931 cccga 44648927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 6270244 - 6270139
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 178  Q
    ||||||||||| || |||||||  |||||| ||||||| || |||| | ||| ||||||||||||||| | ||||||||| || ||||||||||||| |     
T  6270244 aagtaagttttcataaaaaagttgtgtaatcattactttatcaaaa-taacaccttatatttccaagaca-aaatttttaattgtagattccttaactat 6270147  T
Q  179 tgccccga 186  Q
    ||||||||    
T  6270146 tgccccga 6270139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 3347582 - 3347509
Alignment:
Q  103 tgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    |||||||||||||| || |||||| ||| ||||||||| ||||| | |||||||||||| |||||| ||||||||    
T  3347582 tgtaattattactttattaaaagtaacatcttatattttcaagaca-aaatttttatttgtagatttcttaacca 3347509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 40607324 - 40607419
Alignment:
Q  86 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 183  Q
    |||||||||||| ||| ||||||||||||||||| |||||| | | |||||||||  |||||| || ||| |||||||| ||| |||||||| |||||    
T  40607324 tttttattaaaa-gtagtgtaattattacttaatcaaaagtcaaaacttatatttttaagata-aattttctatttataaatttcttaaccattgccc 40607419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 1988807 - 1988865
Alignment:
Q  88 tttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaaga 146  Q
    ||||||||||||||||||||| |||| ||| | |||||| |||| ||||||||| ||||    
T  1988807 tttattaaaaagtaatgtaataattagttagtcaaaagtaacagtttatatttcgaaga 1988865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 18131188 - 18131249
Alignment:
Q  58 gcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaat 119  Q
    |||||||||||||| |||||  |||||| |||||||||||| ||| |||||||||||||||||    
T  18131188 gcattggttaagcaaccaaaacaagtaactttttattaaaa-gtagtgtaattattacttaat 18131249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 18200776 - 18200679
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    ||||||| |||||| ||||| |  |||||| |||||||||| |||||| |||  ||||||||  |||| | |||||||||||| |||||| ||||||||    
T  18200776 aagtaagcttttatgaaaaaattgtgtaatcattacttaatcaaaagtaacatgttatatttttaagaca-aaatttttatttgtagatttcttaacca 18200679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 22266366 - 22266251
Alignment:
Q  31 aaggagaatgttaaccag-ggccccggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 128  Q
    |||||||||||||||||| | ||||||||||||| |||||||   ||| || ||||| ||||||||||||||   ||||| |||| ||| |||||||| |    
T  22266366 aaggagaatgttaaccagtgcccccggggcattgcttaagcagttaaaagaggtaagattttattaaaaagt--ggtaataattagttagtaaaaagtaa 22266269  T
Q  129 cagcttatatttccaaga 146  Q
    ||| |||| ||| |||||    
T  22266268 cagtttatgttttcaaga 22266251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 1551461 - 1551534
Alignment:
Q  28 aataaggagaatgttaaccagggccccggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagt 100  Q
    ||||||||| ||||||||||  | |||||||||||| |||||||  |||| || ||||| ||||||||||||||    
T  1551461 aataaggaggatgttaaccaatgtcccggggcattgattaagcagtcaaaagaggtaagattttattaaaaagt 1551534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 10170438 - 10170397
Alignment:
Q  190 ataataatttgagaaaataaaattattgaatgtaaccacatg 231  Q
    ||||||||||||||||||||| | |||||||||||| |||||    
T  10170438 ataataatttgagaaaataaattaattgaatgtaactacatg 10170397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 33697193 - 33697156
Alignment:
Q  190 ataataatttgagaaaataaaattattgaatgtaacca 227  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  33697193 ataataatttgagaaaataaaataattgaatataacca 33697156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 40489871 - 40489970
Alignment:
Q  82 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 181  Q
    ||||||||||| ||||||| ||||||| ||||||| || || ||| |||  |||||||| ||||  | ||||||||| || ||||||||||||||| |||    
T  40489871 taagtttttatgaaaaagttatgtaatcattactttatcaatagtaacattttatatttacaaggca-aaattttta-ttgtagattccttaaccattgc 40489968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 11150917 - 11151043
Alignment:
Q  56 gggcattggttaagcac-caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 154  Q
    ||||||||||||||||  ||||  |||||||||||||  ||||| |  |||||| |||| || || |||||| ||| |||||||||| |||| | |||||    
T  11150917 gggcattggttaagcattcaaaataagtaagtttttaaaaaaaattg-tgtaatcattatttgatcaaaagtaacatcttatatttctaagacaaaaatt 11151015  T
Q  155 tttatttatagattccttaaccagtgccc 183  Q
    || |||| |||||||||||| || |||||    
T  11151016 tt-atttgtagattccttaatcattgccc 11151043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 17720322 - 17720176
Alignment:
Q  33 ggagaatgttaaccagggccccggggcattggtta--agca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 129  Q
    |||||||||||||||| ||||  ||||||||||||  |||| |||||  ||  ||||||| || |||||||  |||||| ||||| | || |||| | ||    
T  17720322 ggagaatgttaaccagtgcccaagggcattggttataagcatccaaaacaaacaagttttcatgaaaaagttgtgtaatcattacatgatcaaaaataac 17720223  T
Q  130 agcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    | ||||||||| ||||| | | |||| ||||||||||||| |||||||    
T  17720222 atcttatattttcaagaaa-atatttctatttatagattctttaacca 17720176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 31884603 - 31884453
Alignment:
Q  32 aggagaatgttaaccagggccccgg-ggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 130  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| || ||||||| || ||    
T  31884603 aggagaatgttaaccattgccccggaggcattggttaagcaccaaaaaaagtaagtttttattaaaaagtaatgtaattattatttgataaaaaatgtca 31884504  T
Q  131 gcttatatttccaagatagaaatttttatttatagattccttaaccagtgcc 182  Q
    | |||||||||||||||||||| || |||||||||||| |||||| ||||||    
T  31884503 gtttatatttccaagatagaaa-ttctatttatagatttcttaacaagtgcc 31884453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 26855969 - 26855824
Alignment:
Q  32 aggagaatgttaaccagggcc-ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 130  Q
    ||||||||||||||| | ||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||    
T  26855969 aggagaatgttaaccggtgcctccggggcattggttaagcaccaaataaagtaaatttttattaaaa-gtaatgtaattattacttgataaaaagtgaca 26855871  T
Q  131 gcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    | |||||||||||||| | ||| || ||||||||||||| |||||||    
T  26855870 gattatatttccaagacaaaaaattctatttatagattctttaacca 26855824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 33827939 - 33827818
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    |||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||| ||||| ||||||    
T  33827939 attggttaagaaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagtgatcgtttatatttccaagacagaaaattttat 33827840  T
Q  160 ttatagattccttaaccagtgc 181  Q
    ||||||||||||||||||||||    
T  33827839 ttatagattccttaaccagtgc 33827818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 33840026 - 33840147
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    |||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||| ||||| ||||||    
T  33840026 attggttaagaaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagtgatcgtttatatttccaagacagaaaattttat 33840125  T
Q  160 ttatagattccttaaccagtgc 181  Q
    ||||||||||||||||||||||    
T  33840126 ttatagattccttaaccagtgc 33840147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 44109217 - 44109083
Alignment:
Q  29 ataaggagaatgttaaccagggcccc--ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 126  Q
    ||||||| |||||||||||| |||||  ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44109217 ataaggataatgttaaccagtgcccctcggggcattgattaaccac-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagg 44109119  T
Q  127 gacagcttatatttccaagatagaaatttttattta 162  Q
    ||||| |||||||||||||||||||| || ||||||    
T  44109118 gacagtttatatttccaagatagaaaattctattta 44109083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 50127495 - 50127368
Alignment:
Q  28 aataaggagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 126  Q
    |||| |||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  ||||||| |    
T  50127495 aatatggagaatgttaaccagtgcccccggggcattggttaagtaccaaaagaagtaagtttttattaaaaagtaatgtaattattactcgataaaaaat 50127396  T
Q  127 gacagcttatatttccaagatagaaatt 154  Q
    ||||| |||||||||||||| |||||||    
T  50127395 gacagtttatatttccaagacagaaatt 50127368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 50468921 - 50468802
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    |||||||||| | ||| | |||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| ||||||    
T  50468921 attggttaagtatcaagtaaagtaaatttttattaaaaagtaatgtaattattacttaataaaaaatgacaggttatatttctaagatagaaaattttat 50468822  T
Q  160 ttatagattccttaaccagt 179  Q
    ||||||||||||||||||||    
T  50468821 ttatagattccttaaccagt 50468802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 40391335 - 40391209
Alignment:
Q  57 ggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttt 156  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||| ||     
T  40391335 ggcattggttaagcaccaaatgaagtgagtttttatcaaaaagtaatgtaattattacttgataaaaagtgacagtttatattttcaagacagaaaattc 40391236  T
Q  157 tatttatagattccttaaccagtgccc 183  Q
     ||||||||||| ||||| ||||||||    
T  40391235 gatttatagatttcttaatcagtgccc 40391209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 15419798 - 15419646
Alignment:
Q  28 aataaggagaatgttaaccagggcc-ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 126  Q
    |||||||||||| |||||| | | | |||| ||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  15419798 aataaggagaatattaacccgtgtctccggagcattggttaaacaccaaataaagtaaatttttattaaaaagtaatataattattacttaataaaaagt 15419699  T
Q  127 gacagcttatatttccaagatagaaatttttatttatagattccttaaccagt 179  Q
     |||| |||||||||||| | | ||| || ||||||||||||| |||||||||    
T  15419698 aacagtttatatttccaatacaaaaaattctatttatagattcattaaccagt 15419646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 30627755 - 30627610
Alignment:
Q  35 agaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagttttta-ttaaaaagtaatgtaattattacttaataaaaagtgacagct 133  Q
    |||||||||||| | |||| || ||||||||||||||||||  ||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||| |    
T  30627755 agaatgttaaccggtgcccaggtgcattggttaagcaccaagagaagtaaatttttaattaaaaagtaatgtaatcattactttataaaaagtgacaggt 30627656  T
Q  134 tatatttccaagatagaaatttttatttatagattccttaaccagtg 180  Q
    ||||||||||||| | ||| || |||||||||||||||||| |||||    
T  30627655 tatatttccaagacataaa-ttctatttatagattccttaatcagtg 30627610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 48283023 - 48282881
Alignment:
Q  33 ggagaatgttaaccagggcccc-ggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacag 131  Q
    |||||||||||||||| ||||| ||||||||||||||||||||          ||||||| |||||||||||||||||||||| | ||||||||||||||    
T  48283023 ggagaatgttaaccagtgcccccggggcattggttaagcacca----------gtttttactaaaaagtaatgtaattattacctgataaaaagtgacag 48282934  T
Q  132 cttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 185  Q
     |||||||| ||||| ||||| || |||||||||||||||||||||||||||||    
T  48282933 attatattttcaagacagaaa-ttctatttatagattccttaaccagtgccccg 48282881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 16963716 - 16963639
Alignment:
Q  33 ggagaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaatta 110  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16963716 ggagaatgttaaccagtgccccggagcattggttaagcaccaaatgaagtaaatttttattaaaaagtaatgtaatta 16963639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 27742523 - 27742617
Alignment:
Q  31 aaggagaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaag 125  Q
    |||||||||||||||  | |  || |||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27742523 aaggagaatgttaactggtgttcccgggcattggttaagcaacaaaagaagtaattttttattaaaaagtaatgtaattattacttaataaaaag 27742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 19066858 - 19066979
Alignment:
Q  59 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 158  Q
    |||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||  ||||||||||||  ||||||||| |||| | | | || ||    
T  19066858 cattggttaagcgccaaataaagtaaatttttattaaaaagtattgtaattattacttggtaaaaagtgacaatttatatttctaagaca-acaattcta 19066956  T
Q  159 tttatagattccttaaccagtgc 181  Q
    |||||||||| |||||| |||||    
T  19066957 tttatagatttcttaactagtgc 19066979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 19114748 - 19114869
Alignment:
Q  59 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttta 158  Q
    |||||||||||| |||||| |||||| |||||||||||||||| ||||||||||||||  ||||||||||||  ||||||||| |||| | | | || ||    
T  19114748 cattggttaagcgccaaataaagtaaatttttattaaaaagtattgtaattattacttggtaaaaagtgacaatttatatttctaagaca-acaattcta 19114846  T
Q  159 tttatagattccttaaccagtgc 181  Q
    |||||||||| |||||| |||||    
T  19114847 tttatagatttcttaactagtgc 19114869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 13534618 - 13534491
Alignment:
Q  53 ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaa 152  Q
    |||| ||||||||||||| |||||| |||||| |||||||||||||||||||||||||||| ||  ||||||  ||||  ||||||||  |||| || ||    
T  13534618 ccggagcattggttaagcgccaaataaagtaaatttttattaaaaagtaatgtaattattatttggtaaaaaaagacaatttatatttttaagagagcaa 13534519  T
Q  153 tttttatttatagattccttaaccagtgc 181  Q
     || |||| ||||||| ||||||||||||    
T  13534518 -ttctattaatagatttcttaaccagtgc 13534491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 13969242 - 13969099
Alignment:
Q  33 ggagaatgttaaccagggccccggg-gcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 130  Q
    |||||||||||||||| |||||  | | |||||||||||| |||||  |||||||||||||| ||||| |  |||||| |||||||||| |||||| |||    
T  13969242 ggagaatgttaaccagtgccccaagagtattggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagtaaca 13969143  T
Q  131 gcttatatttccaagatagaaatttttatttatagattccttaac 175  Q
      |||||||| ||||| | |||||| ||||| |||||||||||||    
T  13969142 ttttatattttcaagaca-aaatttctatttgtagattccttaac 13969099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 46295963 - 46295860
Alignment:
Q  82 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 181  Q
    ||||||||||| |||||||  ||| || ||||||| || |||||| |||  |||||||| ||||||| |||||||||||| ||||||||||||||| |||    
T  46295963 taagtttttatgaaaaagttgtgtcatgattacttgatcaaaagtaacattttatattttcaagata-aaatttttatttgtagattccttaaccattgc 46295865  T
Q  182 cccga 186  Q
    |||||    
T  46295864 cccga 46295860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 20471413 - 20471326
Alignment:
Q  93 taaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 181  Q
    ||||||||||||||||||||  || |||||||||||||| ||||||||| |||| | | | || |||||||||||| ||||||||||||    
T  20471413 taaaaagtaatgtaattattttttgataaaaagtgacagtttatatttctaagaca-acaattatatttatagatttcttaaccagtgc 20471326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 20560124 - 20560211
Alignment:
Q  93 taaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgc 181  Q
    ||||||||||||||||||||  || |||||||||||||| ||||||||| |||| | | | || |||||||||||| ||||||||||||    
T  20560124 taaaaagtaatgtaattattttttgataaaaagtgacagtttatatttctaagaca-acaattatatttatagatttcttaaccagtgc 20560211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 8001818 - 8001739
Alignment:
Q  103 tgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccc 183  Q
    |||||| ||||||| || |||||| ||| ||||||||| ||||||| |||||| ||||| ||||||||||||||| |||||    
T  8001818 tgtaatcattactttatcaaaagtaacatcttatattttcaagata-aaatttctatttctagattccttaaccattgccc 8001739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 18910525 - 18910397
Alignment:
Q  54 cggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg---acagcttatatttccaagataga 150  Q
    |||| ||||| |||| ||||||| ||| ||| ||||||||||||||||||||||| |||| ||| ||||||||    |||| ||||||||  || ||| |    
T  18910525 cgggacattgattaaacaccaaaagaaataaatttttattaaaaagtaatgtaatcattattta-taaaaagtactaacagtttatatttttaaaata-a 18910428  T
Q  151 aatttttatttatagattccttaaccagtgc 181  Q
    ||||| ||||||||||||| |||| ||||||    
T  18910427 aatttctatttatagattctttaatcagtgc 18910397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 39238849 - 39238952
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 178  Q
    ||||||||||||| |||||| || |||||| ||||||| || ||| || ||| |||| ||||  |||| | |||||||||||||| |||||||||||||     
T  39238849 aagtaagtttttaataaaaaatagtgtaatcattacttgatcaaatgtaacaacttacatttttaagaga-aaatttttatttatggattccttaaccaa 39238947  T
Q  179 tgccc 183  Q
    |||||    
T  39238948 tgccc 39238952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 11802935 - 11802991
Alignment:
Q  88 tttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaa 144  Q
    ||||||||||||||||||||| |||| ||| | |||||| |||| ||||||||||||    
T  11802935 tttattaaaaagtaatgtaataattagttagtcaaaagtaacagtttatatttccaa 11802991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 27688497 - 27688592
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaac 175  Q
    ||||||||||| || ||||| |  |||||| ||||||| || |||||| ||| ||||||||| ||| ||| ||||||| |||| |||||||||||||    
T  27688497 aagtaagttttcatgaaaaacttgtgtaatcattactttatcaaaagtaacatcttatattttcaatata-aaattttaatttgtagattccttaac 27688592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 27517 - 27610
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaa 174  Q
    |||||| ||||||| |||||||| ||||||||||||||||| |||||| | | |||||||||  |||| | || ||||||||||||| | ||||||    
T  27517 aagtaactttttat-aaaaagtagtgtaattattacttaatcaaaagtcaaaacttatattttaaagaca-aattttttatttatagttcccttaa 27610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 20359355 - 20359312
Alignment:
Q  58 gcattggttaagcaccaaatgaagtaagtttttattaaaaagta 101  Q
    ||||||||||||| | |||| |||||||||||||||||||||||    
T  20359355 gcattggttaagcgctaaataaagtaagtttttattaaaaagta 20359312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 20551615 - 20551658
Alignment:
Q  58 gcattggttaagcaccaaatgaagtaagtttttattaaaaagta 101  Q
    ||||||||||||| | |||| |||||||||||||||||||||||    
T  20551615 gcattggttaagcgctaaataaagtaagtttttattaaaaagta 20551658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 36160536 - 36160623
Alignment:
Q  30 taaggagaatgttaaccagggccccggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattactt 116  Q
    ||||||||||| ||||||  |||| || ||||||||||||||   |||  ||||||||| ||| ||||||||| ||||||||||||||    
T  36160536 taaggagaatgctaaccaatgccctggagcattggttaagcaattaaaacaagtaagttcttaataaaaagtagtgtaattattactt 36160623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 11449078 - 11449175
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    |||||||||||||| ||||||| ||||||||||||| | || |||| | |||  ||||||||  |||| | || ||||||||| ||||||| |||||||    
T  11449078 aagtaagtttttatgaaaaagttatgtaattattacatgatcaaaattaacatattatatttttaagaca-aattttttatttgtagattctttaacca 11449175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 38597473 - 38597559
Alignment:
Q  55 ggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatattt 140  Q
    ||||||||||||||| | |||||  ||||||||||| || |||||||  | |||| |||||||||| |||||||| | |||||||||    
T  38597473 ggggcattggttaagtatccaaaacaagtaagttttaataaaaaagttgtctaatcattacttaatcaaaagtgatatcttatattt 38597559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 43328474 - 43328516
Alignment:
Q  190 ataataatttgagaaaataaaattattgaatgtaaccacatgt 232  Q
    |||||||||||||||||| |||| ||| |||||||||||||||    
T  43328474 ataataatttgagaaaatgaaataatttaatgtaaccacatgt 43328516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 43609870 - 43609828
Alignment:
Q  190 ataataatttgagaaaataaaattattgaatgtaaccacatgt 232  Q
    |||||||||||||||||||| || ||||||||||| |||||||    
T  43609870 ataataatttgagaaaataacataattgaatgtaatcacatgt 43609828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 20471775 - 20471726
Alignment:
Q  52 cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagta 101  Q
    ||||| ||||||||||||| | |||| |||||| ||||||||||||||||    
T  20471775 cccggagcattggttaagcgctaaataaagtaaatttttattaaaaagta 20471726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 20559762 - 20559811
Alignment:
Q  52 cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagta 101  Q
    ||||| ||||||||||||| | |||| |||||| ||||||||||||||||    
T  20559762 cccggagcattggttaagcgctaaataaagtaaatttttattaaaaagta 20559811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 33148917 - 33148954
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattactt 116  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  33148917 aagtaagtttttaataaaaagtagtgtaattattactt 33148954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 10226555 - 10226464
Alignment:
Q  81 gtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattcctta 173  Q
    ||||||||| || |||||||  |||||| ||||||| || |||| | ||| ||||||||| ||||| | |||||| ||||| |||||||||||    
T  10226555 gtaagttttcatgaaaaagttgtgtaatcattactttatcaaaattaacatcttatattttcaagaca-aaatttctatttgtagattcctta 10226464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 26829510 - 26829613
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 178  Q
    |||||| |||| || |||||||  |||||| ||||||| || |||||| ||| ||||||||||||||| | |||||| || || || ||| ||||||||     
T  26829510 aagtaaattttcatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatatttccaagaca-aaatttctaattgtaaatttcttaaccat 26829608  T
Q  179 tgccc 183  Q
    |||||    
T  26829609 tgccc 26829613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 31 - 186
Target Start/End: Original strand, 38771 - 38925
Alignment:
Q  31 aaggagaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgaca 130  Q
    |||||||||||||||||| || | || |||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  38771 aaggagaatgttaaccagtgctctggagcattggttaagaatcaaataaaataagtttttattaaaaagtaatgtaattattacttgataaaaaatgaca 38870  T
Q  131 gcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccga 186  Q
    | |||||||||||||||| ||| || ||||||||||||  ||||||||| ||||||    
T  38871 gtttatatttccaagatataaa-ttctatttatagattttttaaccagtaccccga 38925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 31647687 - 31647839
Alignment:
Q  28 aataaggagaatgttaaccagggccccgg-ggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 126  Q
    ||||||||||||||||||| | ||||| | || ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  31647687 aataaggagaatgttaaccggtgcccccgaggtattggttaagcaccaaaagaaataagtttttattaaaaagtaatgtaattattacttgataaaaagt 31647786  T
Q  127 gacagcttatatttccaagatagaaatttttatttatagattccttaaccagtg 180  Q
    || || ||||||||| |||| ||||| || ||||||||||||| |||| |||||    
T  31647787 gatagtttatatttctaagacagaaa-ttctatttatagattctttaatcagtg 31647839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 38320261 - 38320124
Alignment:
Q  33 ggagaatgttaaccagggccccgggg-cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacag 131  Q
    |||||||||||||||| || || | | |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38320261 ggagaatgttaaccagtgcgccagagacattagttaagcatcaaataaagtaagtttttattaaaaagtaatgtaattattacttaataagaagtgacag 38320162  T
Q  132 cttatatttccaagatagaaatttttatttatagattc 169  Q
     |||||||||||||| ||||| || |||||||||||||    
T  38320161 tttatatttccaagacagaaaattctatttatagattc 38320124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 19147262 - 19147137
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    |||| |||||||||||| |||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||| || ||     
T  19147262 attgattaagcaccaaaagaagtaagtttttattaataagtaatgtaattattatttgataaaaagtgacagtttatattttcaagacagaaa-ttctac 19147164  T
Q  160 ttatagattccttaaccagtgccccga 186  Q
    ||||||||| ||||||||||| |||||    
T  19147163 ttatagatttcttaaccagtgtcccga 19147137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 47397604 - 47397724
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    ||||||||||||||||| | ||||| |||||||| ||||||||| ||||||||| || |||||||||||||| ||||||||| || ||||||| || |||    
T  47397604 attggttaagcaccaaaagtagtaaatttttatttaaaagtaatataattattatttgataaaaagtgacagtttatatttctaaaatagaaa-ttctat 47397702  T
Q  160 ttatagattccttaaccagtgc 181  Q
    ||||||||||||||||||||||    
T  47397703 ttatagattccttaaccagtgc 47397724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 31242051 - 31241947
Alignment:
Q  75 aatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaa 174  Q
    ||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| || ||||||||||||||||||    
T  31242051 aatgaggtaaatttttattaaaaagtaatgtaattattatttaataaaaagtgaccgtttatattttcaagacagaaaattctatttatagattccttaa 31241952  T
Q  175 ccagt 179  Q
    |||||    
T  31241951 ccagt 31241947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 20542792 - 20542717
Alignment:
Q  33 ggagaatgttaaccagggccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaat 108  Q
    ||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  20542792 ggagaatgttaactagtgccccggggcattggttaagcaccaaaagaattaagtttttattaaaaagtaatataat 20542717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 51100114 - 51100019
Alignment:
Q  86 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcc 182  Q
    |||||||||||||||| ||||||||||||||||| |||||| | | ||||||||| ||| ||| || ||| ||||||||||||||||||||| ||||    
T  51100114 tttttattaaaaagtagtgtaattattacttaatcaaaagttaaaacttatattttcaaaata-aattttctatttatagattccttaaccattgcc 51100019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 38319606 - 38319533
Alignment:
Q  109 tattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcc 182  Q
    ||||||||||||||||||||||| |||||||| ||| | ||||| || ||||||||||||||||||||| ||||    
T  38319606 tattacttaataaaaagtgacagtttatattttcaaaacagaaaattctatttatagattccttaaccaatgcc 38319533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 50086776 - 50086660
Alignment:
Q  32 aggagaatgttaaccagggcccc-ggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 129  Q
    ||||||||||||||||| ||||| ||||||||||||||||| | ||| || | ||| |||||||||||| |  |||||| |||| ||| | |||||| ||    
T  50086776 aggagaatgttaaccagtgcccccggggcattggttaagcagctaaaagaggcaagattttattaaaaaatggtgtaataattagttagttaaaagtaac 50086677  T
Q  130 agcttatatttccaaga 146  Q
    || ||||||||||||||    
T  50086676 agtttatatttccaaga 50086660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 20775069 - 20775187
Alignment:
Q  59 cattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 157  Q
    ||||||||||||| |||||  |||||||||||||| ||||||| ||||||| |||| || || |||| | | | |||||||||| |||| | || |||||    
T  20775069 cattggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaataatatcttatatttctaagaca-aatttttt 20775167  T
Q  158 atttatagattccttaacca 177  Q
    |||||||||||| |||||||    
T  20775168 atttatagattcattaacca 20775187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 3319365 - 3319268
Alignment:
Q  59 cattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttt 156  Q
    ||||| ||||||| |||| ||| ||| |||||||||||| ||||| ||||||||| || || |||| |||||| ||||||||  || |||||||||||    
T  3319365 cattgattaagcatcaaaagaaataaatttttattaaaaggtaatataattattatttgatgaaaaatgacagtttatatttttaaaatagaaatttt 3319268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 20542664 - 20542600
Alignment:
Q  105 taattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattcc 170  Q
    |||||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||||| ||||||    
T  20542664 taattactacttgataaaaagtgacagtttatatttacaagatagaaa-ttttatttatggattcc 20542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 27284066 - 27284193
Alignment:
Q  56 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 154  Q
    ||||||||||||| || |||||  || ||||||||||| |||||||  || ||| |||| || || |||||| ||| ||||||||||||||| | |||||    
T  27284066 gggcattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgatcaaaagtaacatcttatatttccaagaca-aaatt 27284164  T
Q  155 tttatttatagattccttaaccagtgccc 183  Q
    | ||| | ||||||||||||||| |||||    
T  27284165 tctatatgtagattccttaaccattgccc 27284193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 37431876 - 37431785
Alignment:
Q  80 agtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattcctt 172  Q
    |||||||||||||| ||||||  || |||||||||||||| |||||| ||| |||||| ||  |||||| |||||||||||| || |||||||    
T  37431876 agtaagtttttattgaaaagttgtgcaattattacttaattaaaagtaacatcttataattttaagata-aaatttttatttgtaaattcctt 37431785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 51759207 - 51759263
Alignment:
Q  73 caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgac 129  Q
    |||||||||||||||||||||||||| ||||||| |||||||| |  ||||||||||    
T  51759207 caaatgaagtaagtttttattaaaaaataatgtagttattactaataaaaaagtgac 51759263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 53142777 - 53142896
Alignment:
Q  58 gcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttt 156  Q
    |||||||||||||| || ||  || ||| ||||||| ||||| | |||||||||||||||||| |||||| | | ||||||||| || || | || ||||    
T  53142777 gcattggttaagcaaccgaaacaaataactttttataaaaaaatgatgtaattattacttaatcaaaagttaaaacttatattttcatgaca-aattttt 53142875  T
Q  157 tatttatagattccttaacca 177  Q
    ||||||||| |||||||||||    
T  53142876 tatttatagcttccttaacca 53142896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 41142374 - 41142284
Alignment:
Q  94 aaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 185  Q
    |||||||||||||||||||| ||||| |||||| | | ||||| ||| ||||| | ||||||||||| ||  |||||||||||| |||||||    
T  41142374 aaaaagtaatgtaattattatttaatcaaaagtaagaccttattttttcaagaca-aaatttttattcatgaattccttaaccaatgccccg 41142284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 54248993 - 54249060
Alignment:
Q  73 caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatattt 140  Q
    |||| ||||||||||||||||||||| || ||||||||| |||| ||||||| | |||| ||||||||    
T  54248993 caaaagaagtaagtttttattaaaaaatattgtaattatcacttgataaaaaataacagtttatattt 54249060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 22019621 - 22019718
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    ||||||||||| |  |||||||  |||||| ||||||||||| ||| | ||| |||||||||  |||| | ||||||| ||||||||||||||||||||    
T  22019621 aagtaagttttcaagaaaaagttgtgtaatcattacttaatagaaaataacatcttatattttaaagaca-aaattttcatttatagattccttaacca 22019718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 13967870 - 13967969
Alignment:
Q  86 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtgccccg 185  Q
    ||||||| |||||||  | |||| ||||||| ||||||| | ||| |||||||| |||||| | |||||| ||||| ||||||||||||| | |||||||    
T  13967870 tttttatgaaaaagttgtataatcattacttgataaaaaataacatcttatattaccaagaca-aaatttctatttgtagattccttaactattgccccg 13967968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 14347191 - 14347118
Alignment:
Q  105 taattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccagtg 180  Q
    ||||||||||||||| |||| | | | |||||||||  ||||||  ||||||||||||||| ||||||||||||||    
T  14347191 taattattacttaatcaaaaatcaaaacttatatttttaagata--aatttttatttatagtttccttaaccagtg 14347118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 55090799 - 55090901
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 178  Q
    |||||| ||||||| |||||||  ||||||||| ||||||| |||||| | | ||||||||| ||||| | || |||| |||||||| |||||||||||     
T  55090799 aagtaactttttat-aaaaagttgtgtaattataacttaatcaaaagtcaaaacttatattttcaagaca-aatttttcatttatagtttccttaaccaa 55090896  T
Q  179 tgccc 183  Q
    |||||    
T  55090897 tgccc 55090901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 2565506 - 2565412
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaa 174  Q
    ||||||||||||||  ||||||  |||||| ||||||| || |||||| |||  |||| ||| ||||||| |||||| ||||||||||||| ||||    
T  2565506 aagtaagtttttatagaaaagttgtgtaatcattacttgatcaaaagtaacattttatgttttcaagata-aaatttatatttatagattctttaa 2565412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 12094976 - 12095082
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaaccag 178  Q
    |||||||||||||| |||||||  |||||| ||||||| || |||||| | | ||||||||| |||   | |||||| ||||| ||||||||||||| |     
T  12094976 aagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaatatcttatattttcaatgca-aaatttctatttgtagattccttaactat 12095074  T
Q  179 tgccccga 186  Q
    ||||||||    
T  12095075 tgccccga 12095082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 16341190 - 16341100
Alignment:
Q  86 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    ||||||| ||||| | ||||||| |||||||||| |||||| |||  ||||||||| |||| | ||||||| |||| || ||||||||||||    
T  16341190 tttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaatttt-atttgtaaattccttaacca 16341100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 30127719 - 30127684
Alignment:
Q  197 tttgagaaaataaaattattgaatgtaaccacatgt 232  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30127719 tttgagaaaatgaaattattgaatgtaaccacatgt 30127684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 45921426 - 45921337
Alignment:
Q  86 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    |||||||||||| ||  ||||||||||||||||| || ||| | | ||||||||| ||||| | || ||| |||||||||||||||||||||    
T  45921426 tttttattaaaa-gttgtgtaattattacttaatcaatagtcaaaacttatattttcaagaca-aattttctatttatagattccttaacca 45921337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 20119952 - 20120002
Alignment:
Q  190 ataataatttgagaaaataaaattattgaatgtaaccacatgtcttagtgt 240  Q
    |||||||||||||||||| |||| ||| ||||||| ||||||| |||||||    
T  20119952 ataataatttgagaaaatgaaataatttaatgtaatcacatgtgttagtgt 20120002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 24875735 - 24875773
Alignment:
Q  194 taatttgagaaaataaaattattgaatgtaaccacatgt 232  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  24875735 taatttgagaaaatagaataattgaatgtaaccacatgt 24875773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 44190255 - 44190328
Alignment:
Q  97 aagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattcct 171  Q
    |||| ||||||||||||||| || |||||| ||| ||||||||| ||||||| |||||| ||||| || ||||||    
T  44190255 aagttatgtaattattacttgatcaaaagtaacatcttatattttcaagata-aaatttatatttgtatattcct 44190328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 16072310 - 16072427
Alignment:
Q  31 aaggagaatgttaaccagggcc-ccggggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga 128  Q
    ||||| ||||||||| || ||| ||| | ||||||||||||| | ||| || ||||| |||||||||||| | ||||||| |||| ||| | |||||| |    
T  16072310 aaggacaatgttaacaagtgccgccgagacattggttaagcagctaaaagaggtaagattttattaaaaaatgatgtaataattagttagtcaaaagtaa 16072409  T
Q  129 cagcttatatttccaaga 146  Q
    | | ||||||||||||||    
T  16072410 cggtttatatttccaaga 16072427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 19480555 - 19480616
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatattt 140  Q
    |||||||||||||| |||||||  |||||| ||||||| || |||||| ||| |||||||||    
T  19480555 aagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatattt 19480616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 50269864 - 50269905
Alignment:
Q  191 taataatttgagaaaataaaattattgaatgtaaccacatgt 232  Q
    |||||||||||||||||  |||||||||||||| ||||||||    
T  50269864 taataatttgagaaaattgaattattgaatgtacccacatgt 50269905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 48202457 - 48202549
Alignment:
Q  35 agaatgttaaccagggcccc-ggggcattggttaagcac-caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaag 125  Q
    |||||| ||||||| ||||| |||||||||||||||||  ||||  | |||||||||||| | || ||| |||||||||||||| || |||||    
T  48202457 agaatgctaaccagtgccccaggggcattggttaagcaaacaaaacaggtaagtttttataagaaggtagtgtaattattacttcatcaaaag 48202549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 17506233 - 17506386
Alignment:
Q  31 aaggagaatgttaaccagggccccg-gggcattggttaagcaccaaatgaagtaagtttt--tattaaaaagtaatgtaattattacttaataaaaagtg 127  Q
    |||||||||||||||| | ||| |  |||||||||||| |||||||| ||||||| ||||  ||||||||||||||||||||||||||| ||||||||||    
T  17506233 aaggagaatgttaaccggtgcctctcgggcattggttaggcaccaaaagaagtaattttttttattaaaaagtaatgtaattattacttgataaaaagtg 17506332  T
Q  128 acagcttatatttccaagatagaaatttttatttatagattccttaaccagtgcc 182  Q
    |||| |||||||||||| ||| ||| || |||||||||||| |||||||||||||    
T  17506333 acagtttatatttccaaaatataaa-ttatatttatagatttcttaaccagtgcc 17506386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 21809922 - 21809802
Alignment:
Q  58 gcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattttt 157  Q
    ||||||||||||| | |||| || ||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||||||| |||| | | | || |    
T  21809922 gcattggttaagcgctaaataaaataagtttttattaaaaagtaacgtaattattacttgataaaaagtgacaatttatatttctaagaca-acaattct 21809824  T
Q  158 atttatagattccttaaccagt 179  Q
    ||||||||||| ||||||||||    
T  21809823 atttatagatttcttaaccagt 21809802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 4803147 - 4803268
Alignment:
Q  53 ccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaat-aaaaagtgacagcttatatttccaagatagaa 151  Q
    ||||||||| |||||||||||||| ||||||| |||||| |||||||||||||||||||||||| || |||||||  ||| ||||||||| || | ||||    
T  4803147 ccggggcatcggttaagcaccaaaagaagtaaatttttactaaaaagtaatgtaattattacttgataaaaaagtagcagtttatatttcaaacacagaa 4803246  T
Q  152 atttttatttatagattccttaa 174  Q
    | || ||||||||||||| ||||    
T  4803247 a-ttctatttatagattctttaa 4803268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 10008190 - 10008272
Alignment:
Q  59 cattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatattt 140  Q
    ||||||||||||| ||||| |||||||||||||||||||||||  |||||||||||||| || |||||| || | ||||||||    
T  10008190 cattggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaaccgtttatattt 10008272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 2398041 - 2398120
Alignment:
Q  94 aaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaa 174  Q
    ||||||| |||||||||||||||||| |||||| | | ||||||||| ||||||| || ||| ||||||||||||||||||    
T  2398041 aaaaagtgatgtaattattacttaatcaaaagtcaaaacttatattttcaagata-aattttctatttatagattccttaa 2398120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 6770827 - 6770955
Alignment:
Q  56 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaa-gtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaat 153  Q
    |||||||||||||||| |||||  |||| | ||||||| ||||| || |||||||||||| ||||| |||||| | |  |||||||| ||||||| || |    
T  6770827 gggcattggttaagcaaccaaaacaagtcactttttataaaaaaagttatgtaattattatttaatcaaaagtcaaaatttatattttcaagata-aatt 6770925  T
Q  154 ttttatttatagattccttaaccagtgccc 183  Q
    || ||||||||| ||||||||||| |||||    
T  6770926 ttctatttatagtttccttaaccaatgccc 6770955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 5611224 - 5611129
Alignment:
Q  79 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaac 175  Q
    |||||||||||||| || ||||  | ||||||||| || || |||||| ||| |||||||||| |||| | |||||| |||||||||||||||||||    
T  5611224 aagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatatttctaagaca-aaatttctatttatagattccttaac 5611129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 19418587 - 19418647
Alignment:
Q  54 cggggcattggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattatta 113  Q
    ||||| |||||||||||| ||||| |||||||| |||||||||||||| ||||||| ||||    
T  19418587 cggggtattggttaagcatccaaaagaagtaagattttattaaaaagtgatgtaataatta 19418647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 10252964 - 10253051
Alignment:
Q  60 attggttaagca-ccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaaga 146  Q
    |||||||||||| ||||| |||||||| |||||||||||| | ||||||| |||| ||| | |||| | |||| |||||||| |||||    
T  10252964 attggttaagcaaccaaaagaagtaagattttattaaaaaatgatgtaataattagttagtcaaaaataacagtttatattttcaaga 10253051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 18493255 - 18493330
Alignment:
Q  73 caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagata 148  Q
    ||||| |||||||||||||| |||||||  |||||| ||||||| || |||||| |||  |||||||| |||||||    
T  18493255 caaatcaagtaagtttttataaaaaagttttgtaataattacttgatcaaaagtaacattttatattttcaagata 18493330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 20208100 - 20208011
Alignment:
Q  86 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    |||||||||||| ||||||||||||||||||||| |||||| |   ||||||||| ||| | | || ||| ||||||||||||| |||||||    
T  20208100 tttttattaaaa-gtaatgtaattattacttaatcaaaagtcaatacttatattttcaaaaca-aattttatatttatagattcgttaacca 20208011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 22102123 - 22102034
Alignment:
Q  86 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    |||||||||||| ||||||||||||||||||||| |||||| |   ||||||||| ||| | | || ||| ||||||||||||| |||||||    
T  22102123 tttttattaaaa-gtaatgtaattattacttaatcaaaagtcaatacttatattttcaaaaca-aattttatatttatagattcgttaacca 22102034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 17900891 - 17900773
Alignment:
Q  30 taaggagaatgttaaccagggccccgg-ggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtg 127  Q
    ||||||||||||||||||| ||||| | || ||||||||||||   ||| || ||||| ||||||||||||||  |||||| |||| ||| | ||||||     
T  17900891 taaggagaatgttaaccagtgcccccgaggtattggttaagcagttaaaagaggtaagattttattaaaaagtggtgtaataattagttagtcaaaagta 17900792  T
Q  128 acagcttatatttccaaga 146  Q
    | || |||||| |||||||    
T  17900791 agagtttatatctccaaga 17900773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 26608998 - 26608907
Alignment:
Q  82 taagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaac 175  Q
    |||| |||||||||||||| ||||||| ||||  || | |||||| |||| |||||||| ||||  | || ||||||||| |||||||||||||    
T  26608998 taagattttattaaaaagtgatgtaataattagctagtcaaaagtaacagtttatattttcaag--acaactttttatttttagattccttaac 26608907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 2820416 - 2820376
Alignment:
Q  190 ataataatttgagaaaataaaattattgaatgtaaccacat 230  Q
    ||||||||||||||||||||||| | ||||||||| |||||    
T  2820416 ataataatttgagaaaataaaataaatgaatgtaatcacat 2820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 32134040 - 32134159
Alignment:
Q  56 gggcattggttaagcacc-aaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatt 154  Q
    |||||||||||||||| | |||  |||||||||||  | |||||||  |||||| ||||||| ||||||| | ||| ||||||||  ||| | | |||||    
T  32134040 gggcattggttaagcatctaaaataagtaagttttcttgaaaaagttgtgtaatcattacttgataaaaaataacatcttatattctcaaaaca-aaatt 32134138  T
Q  155 tttatttatagattccttaac 175  Q
    | ||||| |||||||||||||    
T  32134139 tctatttgtagattccttaac 32134159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 22547 - 22414
Alignment:
Q  51 ccccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagataga 150  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| || |||||||||||| | |||||||||||| | | |    
T  22547 ccccgaggcattggttaagcaccaaaagaagtaagtttttattaaagagtaatgtaattattatttgataaaaagtgacggtttatatttccaacaca-a 22449  T
Q  151 aatttttatttatagattccttaaccagtgccccg 185  Q
    || || |||||||||||||||||| ||||| ||||    
T  22448 aagttatatttatagattccttaatcagtgtcccg 22414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 975 - 861
Alignment:
Q  61 ttggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatt 160  Q
    |||||||| ||| |||| |||||| ||||||||| || ||||||||||||||| |||||||||| ||| || |||||||||||||| ||||| || ||||    
T  975 ttggttaaacactaaataaagtaaatttttattagaatgtaatgtaattattatttaataaaaaatgatagtttatatttccaagacagaaaattctatt 876  T
Q  161 tatagattccttaac 175  Q
    |||||||||||||||    
T  875 tatagattccttaac 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 1219 - 1095
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    |||||||||| | ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||| || |||    
T  1219 attggttaagaatcaaataaaataagcttttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatattttcaaga-aaaaaattctat 1121  T
Q  160 ttatagattccttaaccagtgccccg 185  Q
    ||||| ||| ||| ||||||| ||||    
T  1120 ttataaatttcttgaccagtgtcccg 1095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 16944 - 16852
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaa 152  Q
    ||||||||||||||||| ||| ||||||||||||||||| | || |||||||||||| |||||||||||||| |||||||| ||||| |||||    
T  16944 attggttaagcaccaaaagaaataagtttttattaaaaaattatataattattacttgataaaaagtgacagtttatattttcaagacagaaa 16852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 1378 - 1261
Alignment:
Q  78 gaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt-----------gacagcttatatttccaagatagaaatttttatttataga 166  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||           ||||| |||||||||||||| ||||| || ||||||||||    
T  1378 gaagtaagtttttattaaaaagaaatgtaattattacttgataaaaagttgataaaaagtgacagtttatatttccaagacagaaa-ttctatttataga 1280  T
Q  167 ttccttaaccagtgccccg 185  Q
    |||||||||| ||||||||    
T  1279 ttccttaacccgtgccccg 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 52011 - 52131
Alignment:
Q  60 attggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttat 159  Q
    ||||||||| | | |||| ||||||||||||||||||||||||||||||||||| ||  |||||| |||||  ||||||||| |||| | | | || |||    
T  52011 attggttaaacgctaaataaagtaagtttttattaaaaagtaatgtaattattatttggtaaaaaatgacaatttatatttctaagaca-acaattctat 52109  T
Q  160 ttatagattccttaaccagtgc 181  Q
    ||||||||| ||||||| ||||    
T  52110 ttatagatttcttaacccgtgc 52131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 18136 - 18014
Alignment:
Q  56 gggcattggttaagca-ccaaatgaagtaagtttttattaaaaa-gtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaat 153  Q
    |||||||||||||||| |||||  |||||| ||||||| ||||| ||  ||||||||||||||||| |||||| | | |||||||||  |||||| || |    
T  18136 gggcattggttaagcaaccaaaacaagtaactttttataaaaaaagttgtgtaattattacttaatcaaaagtcaaaacttatatttttaagata-aatt 18038  T
Q  154 ttttatttatagattccttaacca 177  Q
    || ||||||||| |||||||||||    
T  18037 ttctatttatagtttccttaacca 18014  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 30105 - 29988
Alignment:
Q  57 ggcattggttaagcac-caaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaattt 155  Q
    |||||||||||| ||| ||||  |||||||||||||| ||||  |  ||||||||||| ||||| |||||| ||| ||||||||| ||| ||| || |||    
T  30105 ggcattggttaaacactcaaaacaagtaagtttttatgaaaagtttgtgtaattattatttaattaaaagtaacatcttatattttcaaaata-aagttt 30007  T
Q  156 ttatttatagattccttaa 174  Q
     ||||| ||||||||||||    
T  30006 ctatttgtagattccttaa 29988  T

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Target: scaffold0205 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 21424 - 21465
Alignment:
Q  191 taataatttgagaaaataaaattattgaatgtaaccacatgt 232  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  21424 taatagtttgagaaaataaaataattgaatgtaaccacatgt 21465  T

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Target: scaffold0079 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 51671 - 51761
Alignment:
Q  86 tttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    ||||||| ||||| | ||||||| |||||||||| |||||| |||  ||||||||| |||| | ||||||| |||| || ||||||||||||    
T  51671 tttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaatttt-atttgtaaattccttaacca 51761  T

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Target: scaffold0592 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 9073 - 9024
Alignment:
Q  52 cccggggcattggttaagcaccaaatgaagtaagtttttattaaaaagta 101  Q
    ||||| ||||||||||||| | |||| ||||||||| |||||||||||||    
T  9073 cccggagcattggttaagcgctaaataaagtaagttgttattaaaaagta 9024  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 151452 - 151415
Alignment:
Q  190 ataataatttgagaaaataaaattattgaatgtaacca 227  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  151452 ataataatttgagaaaataaaataattaaatgtaacca 151415  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 120729 - 120784
Alignment:
Q  121 aaaagtgacagcttatatttccaagatagaaatttttatttatagattccttaacca 177  Q
    |||||||||| ||||||||| ||||| | |||||| ||||| |||||||||||||||    
T  120729 aaaagtgacatcttatattttcaagaca-aaatttctatttgtagattccttaacca 120784  T

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