View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21074_low_18 (Length: 366)

Name: NF21074_low_18
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21074_low_18
NF21074_low_18
[»] chr3 (3 HSPs)
chr3 (10-366)||(29623471-29623826)
chr3 (338-366)||(30131702-30131730)
chr3 (338-366)||(38593182-38593210)
[»] chr1 (2 HSPs)
chr1 (23-98)||(21445241-21445316)
chr1 (338-366)||(42488805-42488833)
[»] chr5 (1 HSPs)
chr5 (337-366)||(32760983-32761012)
[»] chr4 (1 HSPs)
chr4 (335-364)||(904069-904098)
[»] chr8 (2 HSPs)
chr8 (337-365)||(32158980-32159008)
chr8 (336-364)||(36906428-36906456)
[»] chr2 (1 HSPs)
chr2 (338-366)||(6712007-6712035)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 366
Target Start/End: Complemental strand, 29623826 - 29623471
Alignment:
Q  10 attatactaacaaatcgatgatgatcatatgcctcagatagtttgtataaagcgtccaaaacatcctggccagatttcagattaatggtatgcagcttgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29623826 attatactaacaaatcgatgatgatcatatgcctcagatagtttgtataaagcgtccaaaacatcctggccagatttcagattaatggtatgcagcttgc 29623727  T
Q  110 ctggtaggcttcaatttctcttctttggttttatgnnnnnnnnnnnaagaatctttggttttatgttgatagaagaatccaaaggatgttgaagaatcac 209  Q
    |||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29623726 ctggtaggcttcaatttctcttctttggttttatgttttttttt--aagaatctttggttttatgttgatagaagaatccaaaggatgttgaagaatcac 29623629  T
Q  210 tagtgcggcccccagcattcgttgctacctcattgaca-cttccttctgatgatcatgatcagtggaactggtcatannnnnnngtgcctccttcttaag 308  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  29623628 tagtgcggcccccagcattcgttgctacctcattgacaccttccttctgatgatcatgatcagtggaactggtcatatttttttgtgcctccttcttaag 29623529  T
Q  309 atcaatgtccgttgtttaaaactcatctttaaggctttgtttgggagtttggagggaa 366  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29623528 atcaatgtccattgtttaaaactcatctttaaggctttgtttgggagtttggagggaa 29623471  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 366
Target Start/End: Original strand, 30131702 - 30131730
Alignment:
Q  338 taaggctttgtttgggagtttggagggaa 366  Q
    |||||||||||||||||||||||||||||    
T  30131702 taaggctttgtttgggagtttggagggaa 30131730  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 366
Target Start/End: Complemental strand, 38593210 - 38593182
Alignment:
Q  338 taaggctttgtttgggagtttggagggaa 366  Q
    |||||||||||||||||||||||||||||    
T  38593210 taaggctttgtttgggagtttggagggaa 38593182  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 21445316 - 21445241
Alignment:
Q  23 atcgatgatgatcatatgcctcagatagtttgtataaagcgtccaaaacatcctggccagatttcagattaatggt 98  Q
    ||||| |||||||||||| || |||||||| ||||| |||||||| |||||||| ||||| ||||| |||||||||    
T  21445316 atcgacgatgatcatatgtcttagatagttggtatatagcgtccacaacatcctcgccagctttcaaattaatggt 21445241  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 366
Target Start/End: Complemental strand, 42488833 - 42488805
Alignment:
Q  338 taaggctttgtttgggagtttggagggaa 366  Q
    |||||||||||||||||||||||||||||    
T  42488833 taaggctttgtttgggagtttggagggaa 42488805  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 366
Target Start/End: Complemental strand, 32761012 - 32760983
Alignment:
Q  337 ttaaggctttgtttgggagtttggagggaa 366  Q
    ||||||||||||||||||||||||||||||    
T  32761012 ttaaggctttgtttgggagtttggagggaa 32760983  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 364
Target Start/End: Original strand, 904069 - 904098
Alignment:
Q  335 ctttaaggctttgtttgggagtttggaggg 364  Q
    ||||||||||||||||||||||||||||||    
T  904069 ctttaaggctttgtttgggagtttggaggg 904098  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 365
Target Start/End: Complemental strand, 32159008 - 32158980
Alignment:
Q  337 ttaaggctttgtttgggagtttggaggga 365  Q
    |||||||||||||||||||||||||||||    
T  32159008 ttaaggctttgtttgggagtttggaggga 32158980  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 364
Target Start/End: Complemental strand, 36906456 - 36906428
Alignment:
Q  336 tttaaggctttgtttgggagtttggaggg 364  Q
    |||||||||||||||||||||||||||||    
T  36906456 tttaaggctttgtttgggagtttggaggg 36906428  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 366
Target Start/End: Complemental strand, 6712035 - 6712007
Alignment:
Q  338 taaggctttgtttgggagtttggagggaa 366  Q
    |||||||||||||||||||||||||||||    
T  6712035 taaggctttgtttgggagtttggagggaa 6712007  T

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