View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21074_low_20 (Length: 344)

Name: NF21074_low_20
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21074_low_20
NF21074_low_20
[»] chr3 (13 HSPs)
chr3 (89-328)||(4142539-4142778)
chr3 (89-328)||(4158349-4158588)
chr3 (10-96)||(4142412-4142498)
chr3 (10-92)||(4158226-4158308)
chr3 (89-259)||(3754085-3754249)
chr3 (10-96)||(3754290-3754376)
chr3 (31-77)||(23231261-23231307)
chr3 (31-84)||(23235146-23235199)
chr3 (145-208)||(2686776-2686839)
chr3 (286-321)||(3754002-3754037)
chr3 (149-192)||(12132625-12132668)
chr3 (145-179)||(3745558-3745592)
chr3 (47-96)||(2678674-2678723)
[»] chr7 (1 HSPs)
chr7 (149-208)||(1078655-1078714)
[»] chr5 (3 HSPs)
chr5 (145-215)||(2067534-2067604)
chr5 (31-63)||(6402077-6402109)
chr5 (158-194)||(41973942-41973978)
[»] scaffold0200 (1 HSPs)
scaffold0200 (158-194)||(1250-1286)
[»] chr4 (1 HSPs)
chr4 (44-96)||(20020044-20020096)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 89 - 328
Target Start/End: Original strand, 4142539 - 4142778
Alignment:
Q  89 tatcctttgaagaatcatagccaaagccaaacgtcatgacatttagaccagtagtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagg 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4142539 tatcctttgaagaatcatagccaaagccaaacgtcatgacatttagaccagtcgtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagg 4142638  T
Q  189 gttccaacatataactaagcttgtatattcgttgtctgcaatacacacaatgccgttacaagagccaatgaagcgataaaacttggcataaggccaatca 288  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4142639 gttccaacatataactaagcttgtatattcgttgtctgcaagacacacaatgccgttgcaagagccaatgaagcgataaaacttggcataaggccaatca 4142738  T
Q  289 gattgtgtgaagttagaggttatgtctgtgaaatcagagt 328  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4142739 gattgtgtgaagttagaggttatgtctgtgaaatcagagt 4142778  T

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Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 89 - 328
Target Start/End: Original strand, 4158349 - 4158588
Alignment:
Q  89 tatcctttgaagaatcatagccaaagccaaacgtcatgacatttagaccagtagtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||| |||||    
T  4158349 tatcctttgaagaatcatagccaaagccaaacgtcatgacatttacaccagtcatgggcttttcaaaaaggggcaactccttgaattttcttgttgaagg 4158448  T
Q  189 gttccaacatataactaagcttgtatattcgttgtctgcaatacacacaatgccgttacaagagccaatgaagcgataaaacttggcataaggccaatca 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  4158449 gttccaacatataactaagcttgtatattcgttgtctgcaatacacacaatgccgttgcaagaaccaatgaagcgataaaacttggcataaggccaatca 4158548  T
Q  289 gattgtgtgaagttagaggttatgtctgtgaaatcagagt 328  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  4158549 gattgtgtgaagttagagtttatgtctgtgaaatcagagt 4158588  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 4142498 - 4142412
Alignment:
Q  10 tgaggatgatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatccttt 96  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142498 tgaggattatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatccttt 4142412  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 4158308 - 4158226
Alignment:
Q  10 tgaggatgatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatc 92  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||    
T  4158308 tgaggatgatagtttttttaacaaaactcaagtaaaggttcatactttgggtactaatatttggagaaccattcaggactatc 4158226  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 89 - 259
Target Start/End: Complemental strand, 3754249 - 3754085
Alignment:
Q  89 tatcctttgaagaatcatagccaaagccaaacgtcatgacatttagaccagtagtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagg 188  Q
    |||| ||| |||||||||||||||||||||||||||||| | |  ||||| | |    ||||||| |||||||||||| ||||| |||| ||||||||||    
T  3754249 tatcgtttaaagaatcatagccaaagccaaacgtcatgagagtaggaccattcga---cttttcataaaggggcaactgcttgattttttttgtggaagg 3754153  T
Q  189 gttccaacatataactaagcttgtatattcgttgtctgcaatacacacaatgccgttacaagagccaatga 259  Q
    ||||||  ||||||||||||   ||   |  |||||||||||||||||||||||||| |||||||||||||    
T  3754152 gttccacaatataactaagccgtta---tgattgtctgcaatacacacaatgccgttgcaagagccaatga 3754085  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 3754290 - 3754376
Alignment:
Q  10 tgaggatgatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatccttt 96  Q
    ||||||| |||| ||| ||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  3754290 tgaggattataggttttttaacaaaaataaagtaaaggttcatactttgggtactaatatatggagaaccatccaggactatccttt 3754376  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 23231307 - 23231261
Alignment:
Q  31 caaaactcaagtaatggttcatactttgggtactaatatatggagaa 77  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||    
T  23231307 caaaactcaaggaatggttcatactttgggtactaattcatggagaa 23231261  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 23235199 - 23235146
Alignment:
Q  31 caaaactcaagtaatggttcatactttgggtactaatatatggagaaccattca 84  Q
    |||||||||||  ||||||||||||||||||||||||  ||||||||| |||||    
T  23235199 caaaactcaaggcatggttcatactttgggtactaattcatggagaacaattca 23235146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 2686776 - 2686839
Alignment:
Q  145 ggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagc 208  Q
    ||||||||||||||||||||||| || ||||||| |   |||||||||||  ||||||||||||    
T  2686776 ggcttttcaaaaaggggcaactctttaaattttcgtaaagaagggttccacaatataactaagc 2686839  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 3754037 - 3754002
Alignment:
Q  286 tcagattgtgtgaagttagaggttatgtctgtgaaa 321  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3754037 tcagattgtatgaagttagaggttatgtctgtgaaa 3754002  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 12132668 - 12132625
Alignment:
Q  149 tttcaaaaaggggcaactccttgaattttcttgtggaagggttc 192  Q
    |||||| ||||||||||||||||||||||||  |||||||||||    
T  12132668 tttcaagaaggggcaactccttgaattttctaatggaagggttc 12132625  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 3745592 - 3745558
Alignment:
Q  145 ggcttttcaaaaaggggcaactccttgaattttct 179  Q
    ||||||| |||||||||||||||||||||||||||    
T  3745592 ggcttttgaaaaaggggcaactccttgaattttct 3745558  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 2678723 - 2678674
Alignment:
Q  47 gttcatactttgggtactaatatatggagaaccattcaggagtatccttt 96  Q
    ||||||||||||||| ||||||| ||||||| |||||| |||| ||||||    
T  2678723 gttcatactttgggttctaatatttggagaaacattcaagagtttccttt 2678674  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 1078655 - 1078714
Alignment:
Q  149 tttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagc 208  Q
    |||||| ||||||||||||||||||||||||  ||||||||||| |  ||||||||||||    
T  1078655 tttcaagaaggggcaactccttgaattttctaatggaagggttcaacaatataactaagc 1078714  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 2067534 - 2067604
Alignment:
Q  145 ggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagcttgtata 215  Q
    |||||||||||||| ||||||||||||| | ||||  | |||||||| ||  |||||||||||| ||||||    
T  2067534 ggcttttcaaaaagtggcaactccttgattgttctaatagaagggttacacaatataactaagcctgtata 2067604  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 6402109 - 6402077
Alignment:
Q  31 caaaactcaagtaatggttcatactttgggtac 63  Q
    |||||||||||| ||||||||||||||||||||    
T  6402109 caaaactcaagttatggttcatactttgggtac 6402077  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 41973942 - 41973978
Alignment:
Q  158 ggggcaactccttgaattttcttgtggaagggttcca 194  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  41973942 ggggcaattccttgaattttctagtggaagggttcca 41973978  T

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Target: scaffold0200 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 1250 - 1286
Alignment:
Q  158 ggggcaactccttgaattttcttgtggaagggttcca 194  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  1250 ggggcaattccttgaattttctagtggaagggttcca 1286  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 20020096 - 20020044
Alignment:
Q  44 atggttcatactttgggtactaatatatggagaaccattcaggagtatccttt 96  Q
    ||||||||||| |||||||||||| | |||| || ||||||||||| ||||||    
T  20020096 atggttcataccttgggtactaatttttggaaaagcattcaggagtgtccttt 20020044  T

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