View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21074_low_23 (Length: 307)
Name: NF21074_low_23
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21074_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 3866207 - 3865914
Alignment:
| Q |
1 |
atctattgctttgttttttctgtgttggccatgtgctcaaattgtctcataaatatttcctaacactttttgagnnnnnnnnattgaaggtcaaacctag |
100 |
Q |
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| T |
3866207 |
atctattgatttgatttttctgtgttggccatgtgctcaaattgtttcataaatatttcgtaacatttgttga-ttttttttattgaaggtcaaacctag |
3866109 |
T |
|
| Q |
101 |
ggcaacccgagataatggaaggacattctcggaaacattgtgaagtcaaaaaggccaaagaatttcttaatgaagttaagcatagatttcttcaagataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
3866108 |
ggcaacccgagataatggaaggacattctcggaaacattgtgaagtcaaaaaggccaaagaatttcttaatgaagttaaacatagatttattcaagataa |
3866009 |
T |
|
| Q |
201 |
caggagggataagtatgatgattttctgaaagtcttgaaggattataagacaaaaaggtttgatcatgtattaccattattttgtttattatatt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
3866008 |
caggagggataagtatgatgattttctgaaagtcttgaaggattacaagacaaaaaggtttgatcatgtcttaccactattttgtttattatatt |
3865914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 134 - 295
Target Start/End: Complemental strand, 3865341 - 3865181
Alignment:
| Q |
134 |
aacattgtgaagtcaaaaaggccaaagaatttcttaatgaagttaagcatagatttcttcaagataacaggagggataagtatgatgattttctgaaagt |
233 |
Q |
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|||||||||||| ||||| |||||||||||| | ||||||||||| ||||||| |||||| ||| |||||| ||| ||||| | |||||||| || |
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| T |
3865341 |
aacattgtgaagcaaaaaatgccaaagaatttttgaatgaagttaaatgtagatttattcaagttaatcagagggaaaagaatgataactttctgaatgt |
3865242 |
T |
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| Q |
234 |
cttgaaggattataagacaaaaaggtttgatcatgtattaccattattttgtttattatatt |
295 |
Q |
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| T |
3865241 |
cttgaaggattacaggacacaaaggtttgatcatttgtgaccactatttt-tttattatatt |
3865181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 265
Target Start/End: Complemental strand, 3865711 - 3865580
Alignment:
| Q |
134 |
aacattgtgaagtcaaaaaggccaaagaatttcttaatgaagttaagcatagatttcttcaagataacaggagggataagtatgatgattttctgaaagt |
233 |
Q |
| |
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|||||| ||||| ||||| |||||||||||| | ||||| |||||| ||||||| |||||| ||| ||||||||||| |||| | ||| |||| || |
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| T |
3865711 |
aacattctgaagaaaaaaatgccaaagaatttgtcaatgatgttaagtgtagatttattcaagttaatcagagggataagtgtgataactttttgaatgt |
3865612 |
T |
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| Q |
234 |
cttgaaggattataagacaaaaaggtttgatc |
265 |
Q |
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|||||| ||||| |||||| |||||||||||| |
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| T |
3865611 |
cttgaatgattacaagacacaaaggtttgatc |
3865580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 32234283 - 32234198
Alignment:
| Q |
159 |
agaatttcttaatgaagttaagcatagatttcttcaagataacaggagggataagtatgatgattttctgaaagtcttgaaggatt |
244 |
Q |
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||||||| | |||||||| ||| ||||||| |||||||||| | ||| |||||||||||| | ||| ||||||| |||||||||| |
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| T |
32234283 |
agaatttgtcaatgaagtaaagtgtagatttattcaagataatacgagagataagtatgatcactttttgaaagtgttgaaggatt |
32234198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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