View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21074_low_27 (Length: 289)

Name: NF21074_low_27
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21074_low_27
NF21074_low_27
[»] chr3 (50 HSPs)
chr3 (20-288)||(53620061-53620329)
chr3 (120-221)||(47789554-47789655)
chr3 (118-221)||(30131994-30132096)
chr3 (172-224)||(3707030-3707082)
chr3 (118-220)||(29623106-29623210)
chr3 (120-221)||(34306019-34306120)
chr3 (120-227)||(35282961-35283066)
chr3 (172-221)||(41962083-41962132)
chr3 (172-221)||(43237215-43237264)
chr3 (119-224)||(32858700-32858807)
chr3 (118-152)||(517806-517840)
chr3 (115-149)||(53664421-53664455)
chr3 (172-221)||(3043226-3043275)
chr3 (172-221)||(33982827-33982876)
chr3 (172-221)||(47714780-47714829)
chr3 (172-221)||(49860760-49860809)
chr3 (172-221)||(55439508-55439557)
chr3 (124-224)||(27921838-27921941)
chr3 (117-149)||(37674310-37674342)
chr3 (112-152)||(43237521-43237561)
chr3 (123-227)||(3537083-3537187)
chr3 (118-149)||(36598122-36598153)
chr3 (172-223)||(38515175-38515226)
chr3 (115-146)||(47359250-47359281)
chr3 (120-224)||(1133029-1133135)
chr3 (118-152)||(2927731-2927765)
chr3 (118-152)||(3537437-3537471)
chr3 (172-214)||(36796347-36796389)
chr3 (118-152)||(38456485-38456519)
chr3 (118-152)||(39499429-39499463)
chr3 (118-152)||(47789262-47789296)
chr3 (118-151)||(1132756-1132789)
chr3 (172-221)||(23163448-23163497)
chr3 (172-221)||(24242200-24242249)
chr3 (120-149)||(38639471-38639500)
chr3 (248-289)||(39114968-39115009)
chr3 (172-221)||(43007604-43007653)
chr3 (120-149)||(44400590-44400619)
chr3 (172-221)||(44412262-44412311)
chr3 (172-221)||(46312529-46312578)
chr3 (115-164)||(47434107-47434156)
chr3 (120-149)||(53664769-53664798)
chr3 (119-152)||(55439816-55439849)
chr3 (120-152)||(40119061-40119093)
chr3 (120-152)||(44411972-44412004)
chr3 (116-152)||(45555505-45555541)
chr3 (117-149)||(48908707-48908739)
chr3 (120-152)||(48909050-48909082)
chr3 (120-152)||(49861067-49861099)
chr3 (120-164)||(54126155-54126199)
[»] chr1 (62 HSPs)
chr1 (117-230)||(50586917-50587029)
chr1 (118-221)||(27499854-27499957)
chr1 (120-225)||(17556540-17556644)
chr1 (120-223)||(52073553-52073657)
chr1 (117-224)||(36886739-36886846)
chr1 (120-217)||(1523465-1523563)
chr1 (120-221)||(40707306-40707407)
chr1 (118-227)||(49103054-49103162)
chr1 (118-221)||(38794840-38794943)
chr1 (115-221)||(1688324-1688425)
chr1 (172-221)||(23871571-23871620)
chr1 (120-221)||(47905797-47905898)
chr1 (118-219)||(51246673-51246774)
chr1 (120-224)||(26940478-26940582)
chr1 (173-227)||(47742456-47742510)
chr1 (115-222)||(50599068-50599175)
chr1 (172-221)||(13255268-13255317)
chr1 (173-221)||(32295569-32295617)
chr1 (173-221)||(33991466-33991514)
chr1 (118-227)||(36269613-36269722)
chr1 (120-221)||(43572060-43572160)
chr1 (120-164)||(45565348-45565392)
chr1 (118-152)||(34154505-34154539)
chr1 (172-221)||(2926042-2926091)
chr1 (172-221)||(17688262-17688311)
chr1 (118-227)||(28718893-28719003)
chr1 (120-164)||(9595780-9595824)
chr1 (120-217)||(12293682-12293779)
chr1 (120-164)||(39179271-39179315)
chr1 (128-221)||(39889766-39889859)
chr1 (118-149)||(2909019-2909050)
chr1 (117-221)||(11017468-11017572)
chr1 (113-148)||(18421086-18421121)
chr1 (118-149)||(40136449-40136480)
chr1 (120-151)||(41432949-41432980)
chr1 (117-164)||(50402961-50403008)
chr1 (116-204)||(50476419-50476502)
chr1 (172-230)||(7915437-7915495)
chr1 (118-221)||(13061508-13061611)
chr1 (118-164)||(15464030-15464076)
chr1 (118-152)||(29091957-29091991)
chr1 (114-164)||(30538585-30538634)
chr1 (118-152)||(33991773-33991807)
chr1 (181-223)||(36385275-36385317)
chr1 (118-164)||(50247815-50247861)
chr1 (118-152)||(51303350-51303384)
chr1 (120-153)||(666253-666286)
chr1 (120-149)||(5584387-5584416)
chr1 (120-149)||(5584744-5584773)
chr1 (176-221)||(14152628-14152673)
chr1 (172-221)||(26757263-26757312)
chr1 (118-151)||(41432578-41432611)
chr1 (172-221)||(42162161-42162210)
chr1 (173-221)||(938346-938394)
chr1 (120-148)||(27255081-27255109)
chr1 (117-149)||(28727515-28727547)
chr1 (120-152)||(32299334-32299366)
chr1 (120-152)||(32300286-32300318)
chr1 (120-152)||(37649793-37649825)
chr1 (120-152)||(38795196-38795228)
chr1 (120-148)||(47742408-47742436)
chr1 (244-288)||(50476560-50476604)
[»] chr6 (18 HSPs)
chr6 (120-227)||(26713735-26713842)
chr6 (116-221)||(24734755-24734855)
chr6 (118-204)||(2365722-2365808)
chr6 (246-288)||(20820545-20820587)
chr6 (172-221)||(1029217-1029266)
chr6 (172-221)||(29241941-29241990)
chr6 (113-152)||(5825563-5825602)
chr6 (124-204)||(26481252-26481332)
chr6 (114-152)||(4909692-4909730)
chr6 (246-288)||(29054601-29054643)
chr6 (118-152)||(29241649-29241683)
chr6 (122-152)||(32719552-32719582)
chr6 (172-217)||(14275910-14275955)
chr6 (244-289)||(26713885-26713930)
chr6 (119-152)||(33590504-33590537)
chr6 (124-152)||(1567157-1567185)
chr6 (117-149)||(4584307-4584339)
chr6 (172-220)||(5825257-5825305)
[»] chr2 (44 HSPs)
chr2 (122-227)||(16625883-16625988)
chr2 (120-227)||(16519191-16519297)
chr2 (119-220)||(3039057-3039158)
chr2 (118-227)||(4003298-4003407)
chr2 (116-221)||(12964080-12964185)
chr2 (120-221)||(18780254-18780357)
chr2 (122-209)||(11522286-11522373)
chr2 (172-220)||(19382802-19382850)
chr2 (172-224)||(36030738-36030790)
chr2 (120-221)||(44137029-44137125)
chr2 (174-221)||(25960718-25960765)
chr2 (120-220)||(32761383-32761483)
chr2 (118-152)||(11514914-11514948)
chr2 (118-152)||(16813506-16813540)
chr2 (118-152)||(16852785-16852819)
chr2 (115-152)||(6655985-6656022)
chr2 (115-152)||(18826044-18826081)
chr2 (118-196)||(31550382-31550460)
chr2 (119-152)||(43572725-43572758)
chr2 (117-149)||(1365057-1365089)
chr2 (120-221)||(30312513-30312609)
chr2 (117-149)||(34757830-34757862)
chr2 (116-152)||(37201792-37201828)
chr2 (174-221)||(6711940-6711987)
chr2 (118-221)||(14008435-14008539)
chr2 (246-289)||(15803212-15803255)
chr2 (117-164)||(42644864-42644911)
chr2 (120-149)||(1364715-1364744)
chr2 (120-149)||(5322288-5322317)
chr2 (172-221)||(8555884-8555933)
chr2 (120-149)||(11515278-11515307)
chr2 (176-225)||(12941905-12941953)
chr2 (172-221)||(18826340-18826389)
chr2 (172-221)||(32243399-32243448)
chr2 (120-149)||(39204824-39204853)
chr2 (118-151)||(44137309-44137342)
chr2 (173-221)||(8411038-8411086)
chr2 (120-152)||(13018655-13018687)
chr2 (120-152)||(14008147-14008179)
chr2 (172-224)||(31082740-31082792)
chr2 (118-146)||(32761112-32761140)
chr2 (173-221)||(36567386-36567434)
chr2 (124-152)||(37194142-37194170)
chr2 (173-221)||(38023553-38023601)
[»] chr4 (50 HSPs)
chr4 (118-221)||(7182299-7182402)
chr4 (119-221)||(38317337-38317439)
chr4 (118-221)||(41363920-41364023)
chr4 (122-224)||(35959072-35959172)
chr4 (120-227)||(46177029-46177136)
chr4 (172-225)||(54205760-54205813)
chr4 (120-221)||(24279786-24279887)
chr4 (118-221)||(16535561-16535664)
chr4 (172-221)||(37756821-37756870)
chr4 (172-221)||(48830923-48830972)
chr4 (118-220)||(54806345-54806447)
chr4 (120-221)||(38365901-38366002)
chr4 (118-227)||(52636631-52636740)
chr4 (174-221)||(17873122-17873169)
chr4 (118-164)||(675241-675287)
chr4 (122-221)||(13270381-13270475)
chr4 (115-152)||(31530254-31530291)
chr4 (115-152)||(45899513-45899550)
chr4 (118-151)||(52430732-52430765)
chr4 (172-221)||(56504576-56504625)
chr4 (173-221)||(904122-904170)
chr4 (120-221)||(3127119-3127219)
chr4 (118-230)||(21081215-21081332)
chr4 (117-164)||(18964893-18964940)
chr4 (250-289)||(28880029-28880068)
chr4 (115-158)||(29576305-29576348)
chr4 (117-152)||(38137011-38137046)
chr4 (117-152)||(41844666-41844701)
chr4 (118-152)||(20534158-20534192)
chr4 (118-164)||(21357978-21358024)
chr4 (118-152)||(22845048-22845082)
chr4 (118-152)||(29114411-29114445)
chr4 (118-163)||(8827984-8828029)
chr4 (119-164)||(31340658-31340703)
chr4 (172-221)||(31529943-31529992)
chr4 (115-152)||(38366257-38366294)
chr4 (118-151)||(43793957-43793990)
chr4 (173-230)||(45022818-45022875)
chr4 (244-289)||(48417614-48417659)
chr4 (172-225)||(48620204-48620256)
chr4 (118-151)||(48620512-48620545)
chr4 (118-147)||(55813794-55813823)
chr4 (172-220)||(13269877-13269925)
chr4 (124-164)||(21295940-21295980)
chr4 (120-152)||(27485419-27485451)
chr4 (120-221)||(31187202-31187303)
chr4 (124-164)||(31419060-31419100)
chr4 (120-164)||(32648822-32648866)
chr4 (120-152)||(33500392-33500424)
chr4 (172-224)||(45971486-45971538)
[»] chr7 (37 HSPs)
chr7 (118-224)||(3658616-3658722)
chr7 (120-220)||(33406741-33406841)
chr7 (116-227)||(38505436-38505547)
chr7 (172-221)||(23620901-23620950)
chr7 (172-221)||(33113749-33113798)
chr7 (172-221)||(34652159-34652208)
chr7 (244-288)||(19644323-19644367)
chr7 (117-221)||(36747165-36747270)
chr7 (118-221)||(7667272-7667376)
chr7 (118-221)||(5968151-5968253)
chr7 (172-221)||(28437650-28437699)
chr7 (172-221)||(42620459-42620508)
chr7 (118-162)||(1277802-1277846)
chr7 (120-152)||(4058316-4058348)
chr7 (120-152)||(16805744-16805776)
chr7 (118-162)||(46611967-46612011)
chr7 (117-152)||(34651868-34651903)
chr7 (118-152)||(30081236-30081270)
chr7 (117-151)||(33113458-33113492)
chr7 (119-149)||(38137821-38137851)
chr7 (117-146)||(17884364-17884393)
chr7 (172-221)||(19644225-19644274)
chr7 (116-149)||(33188024-33188057)
chr7 (118-151)||(33871776-33871809)
chr7 (123-164)||(36747519-36747560)
chr7 (120-152)||(7666982-7667014)
chr7 (124-152)||(15749126-15749154)
chr7 (124-152)||(19791563-19791591)
chr7 (120-152)||(28437359-28437391)
chr7 (120-152)||(33872231-33872263)
chr7 (120-152)||(38236023-38236055)
chr7 (120-152)||(41471377-41471409)
chr7 (120-152)||(42382926-42382958)
chr7 (116-152)||(42854116-42854152)
chr7 (120-164)||(43189076-43189120)
chr7 (120-152)||(46442581-46442613)
chr7 (135-224)||(46745692-46745780)
[»] chr5 (39 HSPs)
chr5 (120-221)||(35700932-35701033)
chr5 (121-219)||(35704583-35704681)
chr5 (172-221)||(38302461-38302510)
chr5 (119-227)||(10437857-10437965)
chr5 (120-221)||(10295354-10295456)
chr5 (124-221)||(27480278-27480375)
chr5 (177-220)||(4649096-4649139)
chr5 (120-227)||(35708855-35708962)
chr5 (118-152)||(1935241-1935275)
chr5 (172-221)||(1658101-1658150)
chr5 (119-152)||(13569260-13569293)
chr5 (172-221)||(26149527-26149576)
chr5 (117-149)||(5772545-5772577)
chr5 (120-152)||(6491086-6491118)
chr5 (116-152)||(32824531-32824567)
chr5 (121-152)||(9096195-9096226)
chr5 (117-152)||(18670902-18670937)
chr5 (246-289)||(32125277-32125320)
chr5 (174-212)||(6816258-6816296)
chr5 (118-152)||(10295717-10295751)
chr5 (115-149)||(10842922-10842956)
chr5 (118-152)||(17093128-17093162)
chr5 (118-152)||(25598585-25598619)
chr5 (120-227)||(35683575-35683682)
chr5 (118-152)||(38120011-38120045)
chr5 (118-152)||(39649440-39649474)
chr5 (172-221)||(2020905-2020954)
chr5 (175-224)||(6491427-6491476)
chr5 (118-151)||(6620471-6620504)
chr5 (244-289)||(9096341-9096386)
chr5 (118-151)||(9684607-9684640)
chr5 (119-148)||(35683290-35683319)
chr5 (120-164)||(1658395-1658439)
chr5 (117-149)||(10376994-10377026)
chr5 (172-204)||(13449865-13449897)
chr5 (173-221)||(17092823-17092871)
chr5 (117-149)||(21571929-21571961)
chr5 (119-151)||(33718413-33718445)
chr5 (120-148)||(43496379-43496407)
[»] chr8 (34 HSPs)
chr8 (118-221)||(34272384-34272488)
chr8 (120-221)||(3404681-3404782)
chr8 (120-221)||(1942141-1942241)
chr8 (117-221)||(37659639-37659743)
chr8 (118-221)||(36906062-36906160)
chr8 (121-221)||(6691-6791)
chr8 (120-227)||(79715-79823)
chr8 (172-227)||(39193855-39193910)
chr8 (118-164)||(21262740-21262786)
chr8 (118-151)||(1839636-1839669)
chr8 (172-221)||(4734604-4734653)
chr8 (116-152)||(1941864-1941900)
chr8 (119-151)||(23932735-23932767)
chr8 (120-164)||(34148398-34148442)
chr8 (172-220)||(34304640-34304688)
chr8 (120-164)||(42651519-42651563)
chr8 (118-153)||(26772817-26772852)
chr8 (173-220)||(31297456-31297503)
chr8 (118-230)||(35376727-35376839)
chr8 (122-164)||(3635641-3635683)
chr8 (118-148)||(27085218-27085248)
chr8 (123-198)||(31149799-31149874)
chr8 (120-149)||(1839999-1840028)
chr8 (172-225)||(1840309-1840362)
chr8 (124-157)||(40677032-40677065)
chr8 (116-149)||(41866296-41866329)
chr8 (118-150)||(1111305-1111337)
chr8 (117-153)||(9309722-9309758)
chr8 (120-148)||(12319123-12319151)
chr8 (118-162)||(13406299-13406343)
chr8 (120-152)||(21174034-21174066)
chr8 (177-221)||(29611921-29611965)
chr8 (120-152)||(33230864-33230896)
chr8 (120-152)||(36906420-36906452)
[»] scaffold1163 (1 HSPs)
scaffold1163 (121-224)||(1931-2034)
[»] scaffold0051 (2 HSPs)
scaffold0051 (118-152)||(6935-6969)
scaffold0051 (118-152)||(7918-7952)
[»] scaffold0036 (1 HSPs)
scaffold0036 (119-227)||(82666-82775)
[»] scaffold0717 (1 HSPs)
scaffold0717 (118-152)||(1810-1844)
[»] scaffold0248 (1 HSPs)
scaffold0248 (122-152)||(373-403)
[»] scaffold0028 (2 HSPs)
scaffold0028 (118-152)||(35271-35305)
scaffold0028 (120-221)||(35562-35663)
[»] scaffold0388 (1 HSPs)
scaffold0388 (123-152)||(6940-6969)
[»] scaffold0031 (2 HSPs)
scaffold0031 (116-149)||(93309-93342)
scaffold0031 (120-149)||(93676-93705)
[»] scaffold0136 (1 HSPs)
scaffold0136 (120-152)||(2199-2231)
[»] scaffold0128 (1 HSPs)
scaffold0128 (116-152)||(26247-26283)
[»] scaffold0061 (1 HSPs)
scaffold0061 (117-149)||(46555-46587)
[»] scaffold0017 (1 HSPs)
scaffold0017 (117-149)||(152200-152232)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 53620061 - 53620329
Alignment:
Q  20 gttattggtactgtgaatctagtagtaaatgaaagaactcaagaaacacagagtttcagagagaatgaatatgactgcataatacatccacttaatcttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53620061 gttattggtactgtgaatctagtagtaaatgaaagaactcaagaaaaacagagtttcagagagaatgaatatgactgcataatacattcacttaatcttt 53620160  T
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||       |||||||||||||||||||||||||||||||||||||  |||||||||    
T  53620161 aggctttgtttgcgagtttggaggggaagggaggtgagggctttggaaaaaaggaaggagcaagtgggagaaatagaggacattgagagcggagggcttt 53620260  T
Q  220 ggggggttcataatacaaaatctttcaaaaattgtattggatgaggattttagaggatttatatgaatt 288  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53620261 gggggtttcataatacaaaatctttcaaaaattgtattggatgaggattttagagggtttatatgaatt 53620329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 47789655 - 47789554
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| ||||||||||||||||||||  ||||||| |        ||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  47789655 aggctttgtttgggagtttggaggggaagggaggggagggttgtagaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagagcttt 47789556  T
Q  220 gg 221  Q
    ||    
T  47789555 gg 47789554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 30132096 - 30131994
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||||| || ||||||||||| |||||  |||||||| |       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  30132096 ttaggctttgtttgggaatttggaggggaggggaggggagggtttcgaaaaaa-ggaaggagcaagtggaagaaatagaagacattgggaggagagggct 30131998  T
Q  218 ttgg 221  Q
    ||||    
T  30131997 ttgg 30131994  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 3707030 - 3707082
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 224  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||    
T  3707030 ggaaggagcaagtggaagaaatagatgacattgagaggagaaggctttggggg 3707082  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 29623106 - 29623210
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnn--ggaaggagcaagtgggagaaatagaggacattgagaggagaggg 215  Q
    ||||||||||||||||||||| ||||||||| |||  ||||||||||         ||||||||||||||| ||||||||||||||||  |||| |||||    
T  29623106 ttaggctttgtttgcgagtttagaggggaagagaggggagggttttgagaaaaaaaggaaggagcaagtggaagaaatagaggacattaggaggggaggg 29623205  T
Q  216 ctttg 220  Q
    |||||    
T  29623206 ctttg 29623210  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 34306019 - 34306120
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaaggg-agatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 218  Q
    |||||||||||| ||||||||||||| |||| ||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  34306019 aggctttgtttgggagtttggagggggaggggaggggagggttttggaaaaa-ggaaggagcaagtggaagaaatagaagacattgggaggagagggctt 34306117  T
Q  219 tgg 221  Q
    |||    
T  34306118 tgg 34306120  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 35282961 - 35283066
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||||||||||||||||||||| ||  ||||| ||||       ||||||||||||||| ||||||||||  ||||| |||||| | |||||    
T  35282961 aggctttgtttgcgagtttggaggggaaggaaggggaggg-tttggtaaaaaggaaggagcaagtggaagaaatagagatcattgggaggag-gagcttt 35283058  T
Q  220 ggggggtt 227  Q
    ||||||||    
T  35283059 ggggggtt 35283066  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 41962132 - 41962083
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  41962132 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 41962083  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 43237215 - 43237264
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  43237215 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 43237264  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 32858700 - 32858807
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaagggagatgagggttttg--nnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 216  Q
    ||||||||||||||||||||||||||||||| ||  ||||| ||||         |||| |||||||||| ||||||||| ||||||||||||  | |||    
T  32858700 taggctttgtttgcgagtttggaggggaaggaaggggaggggtttggaaaaaaaaggaatgagcaagtggaagaaatagatgacattgagagggaaaggc 32858799  T
Q  217 tttggggg 224  Q
    ||||||||    
T  32858800 tttggggg 32858807  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 517840 - 517806
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||||||    
T  517840 ttaggctttgtttgcgagtttggaggggaagggag 517806  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 53664421 - 53664455
Alignment:
Q  115 tctttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||||||||||||||||    
T  53664421 tctttaggctttgtttgcgagtttggaggggaagg 53664455  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 3043275 - 3043226
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  3043275 ggaaggagcaagtggaagaaatagaagacattgggaggagaggcctttgg 3043226  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 33982876 - 33982827
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  33982876 ggaaggagcaagtggaagaaatagaagacattgggaggagaggactttgg 33982827  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 47714829 - 47714780
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| |||||||  |||||||||||||||    
T  47714829 ggaaggagcaagtggaagaaatagaagacattggaaggagagggctttgg 47714780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 49860760 - 49860809
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  49860760 ggaaggagcaattggaagaaatagaagacattgggaggagagggctttgg 49860809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 55439508 - 55439557
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||| |||||||||| ||||||||||||||||| ||||||||| ||||||    
T  55439508 ggaatgagcaagtggaagaaatagaggacattgggaggagaggactttgg 55439557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 27921838 - 27921941
Alignment:
Q  124 tttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtg---ggagaaatagaggacattgagaggagagggctttg 220  Q
    |||||||||||||||||||||||||||||| || ||||| |       |||| ||| |||||   | |||| |||||||||||| ||||||||| |||||    
T  27921838 tttgtttgcgagtttggaggggaagggagacgacggtttggaaaaaaaggaaagagtaagtggaagaagaagtagaggacattgggaggagaggactttg 27921937  T
Q  221 gggg 224  Q
    ||||    
T  27921938 gggg 27921941  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 37674342 - 37674310
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||||||||||||||    
T  37674342 tttaggctttgtttgcgagtttggaggggaagg 37674310  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 43237561 - 43237521
Alignment:
Q  112 taatctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  43237561 taatatttaggctttgtttgggagtttggaggggaagggag 43237521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 3537083 - 3537187
Alignment:
Q  123 ctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggg 222  Q
    ||||||||||||||||||||||||||||||  || || |||        |||| ||| |||||| |||||||||||| | || |||| ||||||||||||    
T  3537083 ctttgtttgcgagtttggaggggaagggaggggaaggctttagaaaaaaggaatgagtaagtggaagaaatagaggaaaatgggaggggagggctttggg 3537182  T
Q  223 gggtt 227  Q
     ||||    
T  3537183 aggtt 3537187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 149
Target Start/End: Original strand, 36598122 - 36598153
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||||    
T  36598122 ttaggctttgtttgcgagtttggaggggaagg 36598153  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 38515175 - 38515226
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggg 223  Q
    ||||||||||||||  ||||||||| || |||| ||||||||||||||||||    
T  38515175 ggaaggagcaagtgaaagaaatagaagatattgggaggagagggctttgggg 38515226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 146
Target Start/End: Original strand, 47359250 - 47359281
Alignment:
Q  115 tctttaggctttgtttgcgagtttggagggga 146  Q
    ||||||||||||||||||||||||||||||||    
T  47359250 tctttaggctttgtttgcgagtttggagggga 47359281  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 1133135 - 1133029
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttg--nnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||||||||||| ||||||||||||  ||||| ||||         |||| ||||||||||  |||||||| |||||||||||| || || |    
T  1133135 aggctttgtttgcgagtttgtaggggaagggaggggaggggtttggaaaaaaaaggaatgagcaagtggacgaaatagatgacattgagaggggaaggtt 1133036  T
Q  218 ttggggg 224  Q
    |||||||    
T  1133035 ttggggg 1133029  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 2927731 - 2927765
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||| ||||||||||||    
T  2927731 ttaggctttgtttgcgagtttgcaggggaagggag 2927765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 3537471 - 3537437
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  3537471 ttaggctttgtttgggagtttggaggggaagggag 3537437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 36796347 - 36796389
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagg 214  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||    
T  36796347 ggaaggagcaagtggaagaaatagaagacattgggaggagagg 36796389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 38456485 - 38456519
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  38456485 ttaggctttgtttgggagtttggaggggaagggag 38456519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 39499463 - 39499429
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  39499463 ttaggctttgtttgggagtttggaggggaagggag 39499429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 47789262 - 47789296
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  47789262 ttaggctttgtttgggagtttggaggggaagggag 47789296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 1132756 - 1132789
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaaggga 151  Q
    |||||||||||||| |||||||||||||||||||    
T  1132756 ttaggctttgtttgggagtttggaggggaaggga 1132789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 23163448 - 23163497
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| |||||   ||||||||||||||||    
T  23163448 ggaaggagcaagtggaagaaatagaagacatcaggaggagagggctttgg 23163497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 24242249 - 24242200
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| || |||| ||||||||| ||||||    
T  24242249 ggaaggagcaagtggaagaaatagaagatattgggaggagaggactttgg 24242200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Original strand, 38639471 - 38639500
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||    
T  38639471 aggctttgtttgcgagtttggaggggaagg 38639500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 39115009 - 39114968
Alignment:
Q  248 aaattgtattggatgaggattttagaggatttatatgaattc 289  Q
    ||||||||||||| ||||| |||||||| |||||||||||||    
T  39115009 aaattgtattggaggaggactttagagggtttatatgaattc 39114968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 43007653 - 43007604
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||| ||||||||| ||||||||| || |||| ||||||||||||||||    
T  43007653 ggaagtagcaagtggaagaaatagaagatattgggaggagagggctttgg 43007604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Original strand, 44400590 - 44400619
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||    
T  44400590 aggctttgtttgcgagtttggaggggaagg 44400619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 44412311 - 44412262
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  44412311 ggaaggagcaagtggaagaaatagaagacattggaaggagagggttttgg 44412262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 46312578 - 46312529
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||  |||||| ||||||||| ||||||| ||||||||||||||||    
T  46312578 ggaaggactaagtggaagaaatagaagacattgggaggagagggctttgg 46312529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 47434107 - 47434156
Alignment:
Q  115 tctttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||| |||||||||| |||||||||||||||| |||  ||||||||||    
T  47434107 tctttaagctttgtttgggagtttggaggggaagagaggggagggttttg 47434156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 53664798 - 53664769
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||    
T  53664798 aggctttgtttgcgagtttggaggggaagg 53664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 55439849 - 55439816
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||| ||||||||||||||||||||    
T  55439849 taggctttgtttgggagtttggaggggaagggag 55439816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 40119093 - 40119061
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||||||||||| |||||    
T  40119093 aggctttgtttgcgagtttggaggggaggggag 40119061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 44411972 - 44412004
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||| ||||||||||||||||||||    
T  44411972 aggctttgtttgggagtttggaggggaagggag 44412004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 45555505 - 45555541
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||| |||||||||||||| |||||    
T  45555505 ctttaggctttgtttgggagtttggaggggatgggag 45555541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 48908707 - 48908739
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||| |||||||||||||||||    
T  48908707 tttaggctttgtttgggagtttggaggggaagg 48908739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 48909082 - 48909050
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||| |||||||||||||||||||    
T  48909082 aggctttgtttgcaagtttggaggggaagggag 48909050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 49861099 - 49861067
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||| ||||||||||||||||||||    
T  49861099 aggctttgtttgggagtttggaggggaagggag 49861067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 54126155 - 54126199
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||| ||||||| ||||||||||||||||||||  ||||||||||    
T  54126155 aggcattgtttgtgagtttggaggggaagggaggggagggttttg 54126199  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 62)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 50586917 - 50587029
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 216  Q
    ||||||| |||||||| |||||||||||||||||||| ||| | ||||       ||||||||||||||| |||||||||||||||||||||| ||||||    
T  50586917 tttaggccttgtttgcaagtttggaggggaagggagaggagagctttggaaaaaaggaaggagcaagtggaagaaatagaggacattgagagg-gagggc 50587015  T
Q  217 tttggggggttcat 230  Q
    ||||||||||||||    
T  50587016 tttggggggttcat 50587029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 27499854 - 27499957
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||||| ||||||| |||||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  27499854 ttaggctttgtttgggagtttgaaggggaggggaggggagggttttgaaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggct 27499953  T
Q  218 ttgg 221  Q
    ||||    
T  27499954 ttgg 27499957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 17556540 - 17556644
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||||||||||||||||||||||||  |||||||  |       |||||||| |||||| ||||||||||||||||| ||||||| ||||||    
T  17556540 aggctttgtttgcgagtttggaggggaagggaggggagggttcagaaaaaaaggaaggagtaagtggaagaaatagaggacattgggaggaga-ggcttt 17556638  T
Q  220 gggggg 225  Q
    ||||||    
T  17556639 gggggg 17556644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 52073657 - 52073553
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnn-ggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 218  Q
    |||||||||||||||||||||||||||||||||  ||||| ||||        ||||||||||||||| ||||||||| |||||||||||| || |||||    
T  52073657 aggctttgtttgcgagtttggaggggaagggaggggaggggtttgcaaaaaaaggaaggagcaagtggaagaaatagatgacattgagaggggaaggctt 52073558  T
Q  219 tgggg 223  Q
    |||||    
T  52073557 tgggg 52073553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 36886739 - 36886846
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 216  Q
    ||||||||||||||||||||||||||||||||||||  || || || |       |||| |||||||||| |||||||||||| | ||||||| ||||||    
T  36886739 tttaggctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgagaggggagggc 36886838  T
Q  217 tttggggg 224  Q
    ||||||||    
T  36886839 tttggggg 36886846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 1523465 - 1523563
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||| |||||||||||||| |||||||||||||||| |       |||||||||| |||| ||||||||| ||||||| ||||||||||||    
T  1523465 aggctttgtttgagagtttggaggggatgggagatgagggttttggaaaaaaaggaaggagcaggtggaagaaatagaagacattgggaggagagggct 1523563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 40707407 - 40707306
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| |||||||||||||||| |||   || ||||||       ||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  40707407 aggctttgtttgggagtttggaggggaagagagggaagagttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggcttt 40707308  T
Q  220 gg 221  Q
    ||    
T  40707307 gg 40707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 49103162 - 49103054
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    ||||||| |||||||||||||||||||||||||||  |||||||| |       || ||||| |||||| ||||||||||||||||| |||||| |||||    
T  49103162 ttaggctatgtttgcgagtttggaggggaagggaggggagggtttggaaaaaaagggaggagtaagtggaagaaatagaggacattgggaggag-gggct 49103064  T
Q  218 ttggggggtt 227  Q
    |||| |||||    
T  49103063 ttggagggtt 49103054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 38794840 - 38794943
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||||| ||||||||||| || |||||  ||||||||||       ||||||||||||||| | ||||||| || |||| ||||||||||||    
T  38794840 ttaggctttgtttgggagtttggaggcgaggggagtggagggttttgaaaaaaaggaaggagcaagtggaaaaaatagaagatattgggaggagagggct 38794939  T
Q  218 ttgg 221  Q
    ||||    
T  38794940 ttgg 38794943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 1688425 - 1688324
Alignment:
Q  115 tctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagg 214  Q
    |||||||||||||||||  ||||||||||||| |||||     |||||||       ||||||||||||||| ||||||||| ||||||| |||||||||    
T  1688425 tctttaggctttgtttggaagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagg 1688331  T
Q  215 gctttgg 221  Q
    |||||||    
T  1688330 gctttgg 1688324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 23871620 - 23871571
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  23871620 ggaaggagcaagtggaagaaatagaagacattgagaggagagggctttgg 23871571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 47905898 - 47905797
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| |||||||||||||| || ||  ||||||||||       |||||||| |||||| ||||||||| ||||||| |||||||||| |||    
T  47905898 aggctttgtttgggagtttggaggggagggaaggggagggttttggaaaaaaggaaggagtaagtggaagaaatagaagacattgggaggagagggtttt 47905799  T
Q  220 gg 221  Q
    ||    
T  47905798 gg 47905797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 51246774 - 51246673
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||       | ||||||||||||  ||||||||| ||||||| ||||| ||||||    
T  51246774 ttaggctttgtttgggagtttggaggggaggggaggagagggttttgaaaaaaagaaaggagcaagtgaaagaaatagaagacattgggaggaaagggct 51246675  T
Q  218 tt 219  Q
    ||    
T  51246674 tt 51246673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 26940478 - 26940582
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| ||||||||||||||  ||||  ||||||||||       ||||||||||||||| ||||||||| |||||||  ||||||| ||||     
T  26940478 aggctttgtttgagagtttggaggggagaggaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattggaaggagagagcttc 26940577  T
Q  220 ggggg 224  Q
    |||||    
T  26940578 ggggg 26940582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 47742456 - 47742510
Alignment:
Q  173 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 227  Q
    ||||||| |||||| |||||||||||||||||||| | |||||||||||||||||    
T  47742456 gaaggagtaagtggaagaaatagaggacattgagaagggagggctttggggggtt 47742510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 50599175 - 50599068
Alignment:
Q  115 tctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagg 214  Q
    ||||||| ||||||||||| |||||||||| || ||||  || || ||||       ||||||||||||||| | ||||||||||| |||||||| ||||    
T  50599175 tctttagactttgtttgcgggtttggagggcaatggaggggacggctttgggaaaaaggaaggagcaagtggaaaaaatagaggactttgagaggggagg 50599076  T
Q  215 gctttggg 222  Q
    ||||||||    
T  50599075 gctttggg 50599068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 13255268 - 13255317
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  13255268 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 13255317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 32295569 - 32295617
Alignment:
Q  173 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  32295569 gaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 32295617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 33991466 - 33991514
Alignment:
Q  173 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  33991466 gaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 33991514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 36269613 - 36269722
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    ||||||||||||||||||||||||||||||| |||  || || || |       |||| |||||||||| |||||||||| | | || |||| |||||||    
T  36269613 ttaggctttgtttgcgagtttggaggggaagtgaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagagaaaaatgggaggggagggct 36269712  T
Q  218 ttggggggtt 227  Q
    ||||||||||    
T  36269713 ttggggggtt 36269722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 43572160 - 43572060
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| |||||||||||||| |||||   || ||||||       |||| |||||||||| ||||||||| ||||||| ||||||||||||||    
T  43572160 aggctttgtttgggagtttggaggggaggggagggcagagttttgaaaaaaaggaatgagcaagtggaagaaatagaagacattg-gaggagagggcttt 43572062  T
Q  220 gg 221  Q
    ||    
T  43572061 gg 43572060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 45565392 - 45565348
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||||||||||||||||||||||||||||  ||||||||||    
T  45565392 aggctttgtttgcgagtttggaggggaagggaggggagggttttg 45565348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 34154539 - 34154505
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||||||    
T  34154539 ttaggctttgtttgcgagtttggaggggaagggag 34154505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 2926091 - 2926042
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| | ||||||| ||||||| ||||||||||||||||    
T  2926091 ggaaggagcaagtggaaaaaatagaagacattgggaggagagggctttgg 2926042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 17688262 - 17688311
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| |||||||||  |||||| ||||||||||||||||    
T  17688262 ggaaggagcaagtggaagaaatagaaaacattgggaggagagggctttgg 17688311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 28719003 - 28718893
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 216  Q
    |||| ||||||||||||||||||||||||| ||||  ||||||||| |       ||||| ||||||||| |||||||||||| |||| |||| || ||     
T  28719003 ttagactttgtttgcgagtttggaggggaaaggagtggagggttttggaaaaaaaggaagaagcaagtggaagaaatagaggatattgggaggggatggt 28718904  T
Q  217 tttggggggtt 227  Q
    ||| |||||||    
T  28718903 ttttgggggtt 28718893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 9595824 - 9595780
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||    
T  9595824 aggctttgtttgggagtttggaggggaagggaggggagggttttg 9595780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 12293682 - 12293779
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||| |||||||||||||| | |||  ||||||||||       ||||||| ||||||| ||||||||| || | || ||||||||||||    
T  12293682 aggctttgtttgggagtttggaggggaggagaggggagggttttggaaaaaaggaaggatcaagtggaagaaatagaagaaactgggaggagagggct 12293779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 39179315 - 39179271
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||    
T  39179315 aggctttgtttgggagtttggaggggaagggaggggagggttttg 39179271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 39889859 - 39889766
Alignment:
Q  128 tttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||| |||||||||||||| || ||  ||||||||||       |||||||| |||||| | ||||||| ||||||| ||||||||||||||||    
T  39889859 tttgggagtttggaggggagggaaggggagggttttggaaaatgggaaggagtaagtggaaaaaatagaagacattgggaggagagggctttgg 39889766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 149
Target Start/End: Original strand, 2909019 - 2909050
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||||    
T  2909019 ttaggctttgtttgcgagtttggaggggaagg 2909050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 11017468 - 11017572
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 216  Q
    |||||||||| | || |||||||||||||| |||||   ||| |||||       ||||||||||||||| ||||||| | ||||||||||| | |||||    
T  11017468 tttaggctttttctgggagtttggaggggaggggagggaaggattttggaaaaaaggaaggagcaagtggaagaaatatatgacattgagagaaaagggc 11017567  T
Q  217 tttgg 221  Q
    |||||    
T  11017568 tttgg 11017572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 18421121 - 18421086
Alignment:
Q  113 aatctttaggctttgtttgcgagtttggaggggaag 148  Q
    |||||||||||||||||||||||||| |||||||||    
T  18421121 aatctttaggctttgtttgcgagttttgaggggaag 18421086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 149
Target Start/End: Complemental strand, 40136480 - 40136449
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||||    
T  40136480 ttaggctttgtttgcgagtttggaggggaagg 40136449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 151
Target Start/End: Complemental strand, 41432980 - 41432949
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaaggga 151  Q
    ||||||||||||||||||||||||||||||||    
T  41432980 aggctttgtttgcgagtttggaggggaaggga 41432949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 50403008 - 50402961
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    ||||||||||||||| |||||||||||| |||||||| ||||| ||||    
T  50403008 tttaggctttgtttgggagtttggagggtaagggagaggagggctttg 50402961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 50476419 - 50476502
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattg 204  Q
    |||||||||||||||| |||||||||||||| ||     ||||||||||       ||||||||||||||| ||||||||| |||||||    
T  50476419 ctttaggctttgtttgggagtttggaggggaggg-----gagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattg 50476502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 7915437 - 7915495
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 230  Q
    ||||||||||||||| | |||||||| || ||| |||  ||||||||||||||||||||    
T  7915437 ggaaggagcaagtggaaaaaatagagaactttgggagaggagggctttggggggttcat 7915495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 13061611 - 13061508
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    ||||||||||||||  ||||| ||||||| |||||   |||||||||       ||||||||||||||| |||||| || ||||||  || |||||||||    
T  13061611 ttaggctttgtttggaagtttagaggggaggggagggaagggttttggaaaaaaggaaggagcaagtggaagaaattgaagacattcggaagagagggct 13061512  T
Q  218 ttgg 221  Q
    ||||    
T  13061511 ttgg 13061508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 15464076 - 15464030
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||||||||| ||||||| ||||||||||||  ||||||||||    
T  15464076 ttaggctttgtttgggagtttgaaggggaagggaggggagggttttg 15464030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 29091957 - 29091991
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||||||||| |||||||||    
T  29091957 ttaggctttgtttgcgagtttggagaggaagggag 29091991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 30538585 - 30538634
Alignment:
Q  114 atctttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    ||||||||||||||||||  |||||||||||||||||| | ||||||||||    
T  30538585 atctttaggctttgtttggaagtttggaggggaaggga-aggagggttttg 30538634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 33991807 - 33991773
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  33991807 ttaggctttgtttgggagtttggaggggaagggag 33991773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 36385275 - 36385317
Alignment:
Q  181 aagtgggagaaatagaggacattgagaggagagggctttgggg 223  Q
    |||||| ||||||||||||||||||||| |||||| |||||||    
T  36385275 aagtggaagaaatagaggacattgagagaagagggttttgggg 36385317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 50247861 - 50247815
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    ||||||||| |||| ||||||||||||||||||||  ||||||||||    
T  50247861 ttaggctttctttgggagtttggaggggaagggaggggagggttttg 50247815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 51303384 - 51303350
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||||| |||||||||||||    
T  51303384 ttaggctttgtttgcgagtttagaggggaagggag 51303350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 666253 - 666286
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggaga 153  Q
    |||||||||||| |||||||||||||||||||||    
T  666253 aggctttgtttgtgagtttggaggggaagggaga 666286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Original strand, 5584387 - 5584416
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||    
T  5584387 aggctttgtttgcgagtttggaggggaagg 5584416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 5584773 - 5584744
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||    
T  5584773 aggctttgtttgcgagtttggaggggaagg 5584744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 14152628 - 14152673
Alignment:
Q  176 ggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  14152628 ggagcaagtggaagaaatagaagacattgggaggagagggttttgg 14152673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 26757312 - 26757263
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||| ||| ||||||||| || |||| ||||||||||||||||    
T  26757312 ggaaggagcaaatggaagaaatagaagatattgggaggagagggctttgg 26757263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 41432578 - 41432611
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaaggga 151  Q
    |||||||||||||| |||||||||||||||||||    
T  41432578 ttaggctttgtttgggagtttggaggggaaggga 41432611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 42162210 - 42162161
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  42162210 ggaaggagcaagtggaagaaatagatgacattggaaggagagggttttgg 42162161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 938394 - 938346
Alignment:
Q  173 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||| ||||||| ||||||||| || ||||||||||||||| |||||    
T  938394 gaaggatcaagtggaagaaatagaagatattgagaggagagggttttgg 938346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 27255081 - 27255109
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaag 148  Q
    |||||||||||||||||||||||||||||    
T  27255081 aggctttgtttgcgagtttggaggggaag 27255109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 28727515 - 28727547
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||| ||||||||||    
T  28727515 tttaggctttgtttgcgagttttgaggggaagg 28727547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 32299366 - 32299334
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||| ||||||||||||||||||||    
T  32299366 aggctttgtttgggagtttggaggggaagggag 32299334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 32300318 - 32300286
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||| ||||||||||||||||||||    
T  32300318 aggctttgtttgggagtttggaggggaagggag 32300286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 37649825 - 37649793
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||| ||||    
T  37649825 aggctttgtttgcgagtttggaggggaatggag 37649793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 38795228 - 38795196
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||| ||||||||||||||||||||    
T  38795228 aggctttgtttgggagtttggaggggaagggag 38795196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 47742408 - 47742436
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaag 148  Q
    |||||||||||||||||||||||||||||    
T  47742408 aggctttgtttgcgagtttggaggggaag 47742436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 50476560 - 50476604
Alignment:
Q  244 tcaaaaattgtattggatgaggattttagaggatttatatgaatt 288  Q
    ||||||||||||||||| |||| |||| |||| ||||||||||||    
T  50476560 tcaaaaattgtattggaggagggttttcgagggtttatatgaatt 50476604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 26713735 - 26713842
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||||||||||||||||||||||||  ||||||||||       ||||||||||||||| |||||||||| |||||| |||| |||||||||    
T  26713735 aggctttgtttgcgagtttggaggggaagggaggggagggttttggaataaaggaaggagcaagtggaagaaatagagtacattgggaggggagggcttt 26713834  T
Q  220 ggggggtt 227  Q
    | ||||||    
T  26713835 gaggggtt 26713842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 24734755 - 24734855
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagaggg 215  Q
    |||||||||||||||| ||||||||||||||||||||     |||||||       |||| |||||||||| ||||||||| ||||||| ||||||||||    
T  24734755 ctttaggctttgtttgggagtttggaggggaagggag-----ggttttggaaaaaaggaacgagcaagtggaagaaatagaagacattgggaggagaggg 24734849  T
Q  216 ctttgg 221  Q
    ||||||    
T  24734850 ctttgg 24734855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 2365808 - 2365722
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattg 204  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| |||||||    
T  2365808 ttaggctttgtttgggagtttggaggggaggggaggggagggttttgaaaaaaaggaaggagcaagtggaagaaatagaagacattg 2365722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 20820587 - 20820545
Alignment:
Q  246 aaaaattgtattggatgaggattttagaggatttatatgaatt 288  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  20820587 aaaaattgtattggatgagagttttagaggatttatatgaatt 20820545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 1029217 - 1029266
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| |||||||  |||||||||||||||    
T  1029217 ggaaggagcaagtggaagaaatagaagacattggaaggagagggctttgg 1029266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 29241990 - 29241941
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  29241990 ggaaggagcaaatggaagaaatagaagacattgggaggagagggctttgg 29241941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 5825602 - 5825563
Alignment:
Q  113 aatctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  5825602 aatcttaaggctttgtttgggagtttggaggggaagggag 5825563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 26481332 - 26481252
Alignment:
Q  124 tttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattg 204  Q
    |||||||| |||||||||||||| |||||  ||||||||||       ||||| ||||||||| ||||||||| |||||||    
T  26481332 tttgtttgggagtttggaggggaggggaggggagggttttgaaaaaaaggaagtagcaagtggaagaaatagaagacattg 26481252  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 4909692 - 4909730
Alignment:
Q  114 atctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  4909692 atcttaaggctttgtttgggagtttggaggggaagggag 4909730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 29054601 - 29054643
Alignment:
Q  246 aaaaattgtattggatgaggattttagaggatttatatgaatt 288  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||    
T  29054601 aaaaattgtattgaatgaggatttttgagggtttatatgaatt 29054643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 29241649 - 29241683
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  29241649 ttaggctttgtttgggagtttggaggggaagggag 29241683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 32719582 - 32719552
Alignment:
Q  122 gctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||    
T  32719582 gctttgtttgcgagtttggaggggaagggag 32719552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 14275910 - 14275955
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||    
T  14275910 ggaatgagcaagtggaagaaatagaagacattgggaggagagggct 14275955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 26713885 - 26713930
Alignment:
Q  244 tcaaaaattgtattggatgaggattttagaggatttatatgaattc 289  Q
    ||||||||||||||||| |||| |||| |||| |||||||||||||    
T  26713885 tcaaaaattgtattggaggagggttttggagggtttatatgaattc 26713930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 33590537 - 33590504
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||||||||||||| ||||    
T  33590537 taggctttgtttgcgagtttggaggggaatggag 33590504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 1567157 - 1567185
Alignment:
Q  124 tttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||    
T  1567157 tttgtttgcgagtttggaggggaagggag 1567185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 4584339 - 4584307
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||| ||||||||||    
T  4584339 tttaggctttgtttgcgagttttgaggggaagg 4584307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 5825257 - 5825305
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 220  Q
    ||||||||||||||  ||||||||| ||||||| ||||||| |||||||    
T  5825257 ggaaggagcaagtgaaagaaatagaagacattgggaggagaaggctttg 5825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 16625988 - 16625883
Alignment:
Q  122 gctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||||||||||||||||||||||||||  ||||||||||       ||| ||||||||||| |||||||||| |||||| |||| |||||||||||    
T  16625988 gctttgtttgcgagtttggaggggaagggaggggagggttttggaaaaaaggatggagcaagtggaagaaatagagtacattgggaggggagggctttgg 16625889  T
Q  222 ggggtt 227  Q
    ||||||    
T  16625888 ggggtt 16625883  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 16519297 - 16519191
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    ||||||||||||||||||||||||||||| |||  ||||||||||       ||||||||||||||| |||||||||| |||||| |||| |||||||||    
T  16519297 aggctttgtttgcgagtttggaggggaagagaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagagtacattg-gaggggagggcttt 16519199  T
Q  220 ggggggtt 227  Q
    || |||||    
T  16519198 ggtgggtt 16519191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 3039158 - 3039057
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 218  Q
    ||||||||||||| ||||||||||||||  ||||  ||||||||||       ||||||||||||||| | ||||||| ||||||| |||||||||||||    
T  3039158 taggctttgtttgggagtttggaggggagaggaggagagggttttgaaaaaaaggaaggagcaagtggaaaaaatagaagacattgggaggagagggctt 3039059  T
Q  219 tg 220  Q
    ||    
T  3039058 tg 3039057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 4003298 - 4003407
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||||| |||||||||| |||||||||  ||||| ||||       |||| |||||||||| |||||||||||| | || |||| |||||||    
T  4003298 ttaggctttgtttgtgagtttggagtggaagggaggggagggctttggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggagggct 4003397  T
Q  218 ttggggggtt 227  Q
    ||||||||||    
T  4003398 ttggggggtt 4003407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 12964185 - 12964080
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagaggg 215  Q
    |||||||||||||||| ||||| |||||||| | |||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||| |    
T  12964185 ctttaggctttgtttgggagttgggaggggaggagaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagag 12964086  T
Q  216 ctttgg 221  Q
    ||||||    
T  12964085 ctttgg 12964080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 18780254 - 18780357
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggac--attgagaggagagggct 217  Q
    |||||||||||| |||||||||||||| |||||  ||||||||||       |||||||||| |||| ||||||||| |||  |||| ||||||||||||    
T  18780254 aggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcacgtggaagaaatagaagacatattgggaggagagggct 18780353  T
Q  218 ttgg 221  Q
    ||||    
T  18780354 ttgg 18780357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 11522373 - 11522286
Alignment:
Q  122 gctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagagg 209  Q
    |||||||||||||||||||||||||| ||||  ||||||||||       |||||||| || ||| ||||||||||||||||| ||||    
T  11522373 gctttgtttgcgagtttggaggggaatggaggggagggttttgaaaaaaaggaaggagtaaatggaagaaatagaggacattgggagg 11522286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 19382802 - 19382850
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 220  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  19382802 ggaaggagcaagtggaagaaatagaagacattgagaggaaagggctttg 19382850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 36030738 - 36030790
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 224  Q
    ||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||    
T  36030738 ggaaggagccagtggaagaaatagaggaccttgagaagagagggctttggggg 36030790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 44137029 - 44137125
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| |||||||||||||| |||||     |||||||       ||||||||||| ||| ||||||||| ||||||| ||||||||||||||    
T  44137029 aggctttgtttgggagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaaatggaagaaatagaagacattgggaggagagggcttt 44137123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 25960765 - 25960718
Alignment:
Q  174 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  25960765 aaggagcaagtggaagaaatagaagacattgaaaggagagggctttgg 25960718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 32761483 - 32761383
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||| ||||||||||||||||||||||||  ||||| ||||        |||||| ||||||| | ||||||||||||||| | | ||||||||||    
T  32761483 aggctttgattgcgagtttggaggggaagggaggggagggctttgtaaaaaatgaaggatcaagtggaataaatagaggacattgggggcagagggcttt 32761384  T
Q  220 g 220  Q
    |    
T  32761383 g 32761383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 11514914 - 11514948
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||||||    
T  11514914 ttaggctttgtttgcgagtttggaggggaagggag 11514948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 16813506 - 16813540
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||||||    
T  16813506 ttaggctttgtttgcgagtttggaggggaagggag 16813540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 16852785 - 16852819
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||||||    
T  16852785 ttaggctttgtttgcgagtttggaggggaagggag 16852819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 6655985 - 6656022
Alignment:
Q  115 tctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| |||||||||||||||||||||||    
T  6655985 tctttaggctttgtctgcgagtttggaggggaagggag 6656022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 18826044 - 18826081
Alignment:
Q  115 tctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  18826044 tctttaggctttgtttgggagtttggaggggaagggag 18826081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 31550460 - 31550382
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaataga 196  Q
    |||||||||||||| |||||||||| ||| |||||  ||||||||||       ||||||||||||||| |||||||||    
T  31550460 ttaggctttgtttgggagtttggagtggaggggaggggagggttttggaaaaaaggaaggagcaagtggaagaaataga 31550382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 43572758 - 43572725
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||||||||||||||||||    
T  43572758 taggctttgtttgcgagtttggaggggaagggag 43572725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 1365089 - 1365057
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||||||||||||||    
T  1365089 tttaggctttgtttgcgagtttggaggggaagg 1365057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 30312609 - 30312513
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| |||||||||||||| |||||     |||||||       ||||||||||||||| |||||||||  |||||| |||||||||| |||    
T  30312609 aggctttgtttgggagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaagtggaagaaatagaacacattgggaggagagggtttt 30312515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 34757862 - 34757830
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||||||||||||||    
T  34757862 tttaggctttgtttgcgagtttggaggggaagg 34757830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 37201828 - 37201792
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||| |||||||||||||||||    
T  37201828 ctttaggctttgtttgcgaatttggaggggaagggag 37201792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 6711987 - 6711940
Alignment:
Q  174 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||| ||| ||| ||||||||| ||||||||||||||||||||||||    
T  6711987 aaggaacaaatggaagaaatagaagacattgagaggagagggctttgg 6711940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 14008539 - 14008435
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 216  Q
    ||||||||| |||| ||||||||||||||||||||  ||||||||| |        ||||||| |||||| ||||||||| ||||||| || |||| |||    
T  14008539 ttaggctttctttgggagtttggaggggaagggaggggagggttttggaaaaaaaagaaggagtaagtggaagaaatagaagacattgggatgagatggc 14008440  T
Q  217 tttgg 221  Q
    |||||    
T  14008439 tttgg 14008435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 15803212 - 15803255
Alignment:
Q  246 aaaaattgtattggatgaggattttagaggatttatatgaattc 289  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||    
T  15803212 aaaaattgtattggaggaggattttggagggtttatatgaattc 15803255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 42644911 - 42644864
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||| |||||| ||||||||||||||||||||  ||||||||||    
T  42644911 tttaggctctgtttgggagtttggaggggaagggaggagagggttttg 42644864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Original strand, 1364715 - 1364744
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||    
T  1364715 aggctttgtttgcgagtttggaggggaagg 1364744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 5322317 - 5322288
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||    
T  5322317 aggctttgtttgcgagtttggaggggaagg 5322288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 8555933 - 8555884
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| ||| |||||| |||||    
T  8555933 ggaaggagcaagtggaagaaatagaagacattgggagaagagggttttgg 8555884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 11515307 - 11515278
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||    
T  11515307 aggctttgtttgcgagtttggaggggaagg 11515278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 12941953 - 12941905
Alignment:
Q  176 ggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 225  Q
    |||| |||||| ||||||||||||||||| ||||| ||||||||||||||    
T  12941953 ggagtaagtggaagaaatagaggacattgggagga-agggctttgggggg 12941905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 18826389 - 18826340
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||  || |||||||||||||    
T  18826389 ggaaggagcaagtggaagaaatagaagacattaggaagagagggctttgg 18826340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 32243399 - 32243448
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||||||  || ||||||||| ||||||| ||||||||||||||||    
T  32243399 ggaaggagcaatgggaagaaatagaagacattgggaggagagggctttgg 32243448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Original strand, 39204824 - 39204853
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||    
T  39204824 aggctttgtttgcgagtttggaggggaagg 39204853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 44137342 - 44137309
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaaggga 151  Q
    |||||||||||||| |||||||||||||||||||    
T  44137342 ttaggctttgtttgggagtttggaggggaaggga 44137309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 8411086 - 8411038
Alignment:
Q  173 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||||||| |  |||||||| ||||||| ||||||||||||||||    
T  8411086 gaaggagcaagttgaggaaatagaagacattgggaggagagggctttgg 8411038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 13018687 - 13018655
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||| ||||||||||    
T  13018687 aggctttgtttgcgagtttggaagggaagggag 13018655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 14008147 - 14008179
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||| ||||||||||||||||||||    
T  14008147 aggctttgtttgggagtttggaggggaagggag 14008179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 31082740 - 31082792
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 224  Q
    |||| |||||||||| |||||||||||| | || |||| ||||||||||||||    
T  31082740 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggg 31082792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 32761112 - 32761140
Alignment:
Q  118 ttaggctttgtttgcgagtttggagggga 146  Q
    |||||||||||||||||||||||||||||    
T  32761112 ttaggctttgtttgcgagtttggagggga 32761140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 36567434 - 36567386
Alignment:
Q  173 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  36567434 gaaggagcaagtggaagaaatagaagacattggaaggagagggttttgg 36567386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 37194142 - 37194170
Alignment:
Q  124 tttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||    
T  37194142 tttgtttgcgagtttggaggggaagggag 37194170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 38023601 - 38023553
Alignment:
Q  173 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||||||| | ||||||||| |||||||| ||||||||| |||||    
T  38023601 gaaggagcaagtagaagaaatagaagacattgaaaggagagggttttgg 38023553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 7182402 - 7182299
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| |||||||||||||||| |||    
T  7182402 ttaggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagagct 7182303  T
Q  218 ttgg 221  Q
    ||||    
T  7182302 ttgg 7182299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 38317439 - 38317337
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 218  Q
    ||||||||||||| ||||| |||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  38317439 taggctttgtttgggagttgggaggggaggggaggagagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggctt 38317340  T
Q  219 tgg 221  Q
    |||    
T  38317339 tgg 38317337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 41364023 - 41363920
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||||| |||||||||||||| |||||   | |||||||       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  41364023 ttaggctttgtttgggagtttggaggggaggggagggaacggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggct 41363924  T
Q  218 ttgg 221  Q
    ||||    
T  41363923 ttgg 41363920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 35959072 - 35959172
Alignment:
Q  122 gctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||||||||||||||||||||||||||  |||| ||| |       ||||||||||||||| |||||||||| |||||| |||| |||||||||||    
T  35959072 gctttgtttgcgagtttggaggggaagggaggggaggttttggaaaga--ggaaggagcaagtggaagaaatagagtacattgtgaggggagggctttgg 35959169  T
Q  222 ggg 224  Q
    |||    
T  35959170 ggg 35959172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 46177136 - 46177029
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| |||||||||||| |||||||  ||||||||||        |||||| ||||||| |||||||||| |||||| |||| ||||| |||    
T  46177136 aggctttgtttgtgagtttggagggaaagggaggggagggttttggaaaaaaagaaggaacaagtggaagaaatagagtacattgggaggggagggtttt 46177037  T
Q  220 ggggggtt 227  Q
    ||||||||    
T  46177036 ggggggtt 46177029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 54205760 - 54205813
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 225  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  54205760 ggaaggagcaagtggaagaaatagaggactttgagaggggagggctttgggggg 54205813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 24279786 - 24279887
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||| ||| |||||| |||||||||||||  ||||||||||       ||||||||||||||| || |||| | ||||||| ||||||||||||||    
T  24279786 aggctttgattgggagtttagaggggaagggagtggagggttttggaaaaaaggaaggagcaagtggaaggaataaaagacattgggaggagagggcttt 24279885  T
Q  220 gg 221  Q
    ||    
T  24279886 gg 24279887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 16535561 - 16535664
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    ||||| |||||||| |||||| |||||||  ||||  |||||||| |       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  16535561 ttaggttttgtttgggagtttagaggggagaggaggggagggtttgggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggct 16535660  T
Q  218 ttgg 221  Q
    ||||    
T  16535661 ttgg 16535664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 37756870 - 37756821
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  37756870 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 37756821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 48830972 - 48830923
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  48830972 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 48830923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 54806345 - 54806447
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||||| |||||||||| |||||||||  ||||||||||        || ||||||||||| || |||| | ||||||| ||||||||||||    
T  54806345 ttaggctttgtttgggagtttggagaggaagggaggggagggttttggaaaaaatgatggagcaagtggaaggaataaaagacattgggaggagagggct 54806444  T
Q  218 ttg 220  Q
    |||    
T  54806445 ttg 54806447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 38365901 - 38366002
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| |||||||||||||| |||||  ||| |||||        ||||||||||||||| ||||||||| |||||||  |||||||| ||||    
T  38365901 aggctttgtttgggagtttggaggggaggggaggggagagttttagaaaaaaggaaggagcaagtggaagaaatagaagacattggaaggagaggacttt 38366000  T
Q  220 gg 221  Q
    ||    
T  38366001 gg 38366002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 52636631 - 52636740
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    ||||||||||||||||||||||||||||||||||   |||  |||||       |||  |||||||||| |||||||||| ||||||  ||  |||||||    
T  52636631 ttaggctttgtttgcgagtttggaggggaagggatgggagaattttggaaaaaaggactgagcaagtggaagaaatagagtacattggaagatgagggct 52636730  T
Q  218 ttggggggtt 227  Q
    ||||||||||    
T  52636731 ttggggggtt 52636740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 17873122 - 17873169
Alignment:
Q  174 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  17873122 aaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 17873169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 675241 - 675287
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||||    
T  675241 ttaggctttgtttgcgagtttggaggggaagggaaaggagggctttg 675287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 13270475 - 13270381
Alignment:
Q  122 gctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||||| |||||||||||||| |||||     |||||||       ||||||||||||||| ||||||||| ||||||| ||| ||||||||||||    
T  13270475 gctttgtttgggagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggagtagagggctttgg 13270381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 31530291 - 31530254
Alignment:
Q  115 tctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31530291 tctttaggctttgtttgagagtttggaggggaagggag 31530254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 45899550 - 45899513
Alignment:
Q  115 tctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  45899550 tctttaggctttgtttgggagtttggaggggaagggag 45899513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 52430765 - 52430732
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaaggga 151  Q
    ||||||||||||||||||||||||||||||||||    
T  52430765 ttaggctttgtttgcgagtttggaggggaaggga 52430732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 56504625 - 56504576
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||  ||||||||| ||||||| ||||||||||||||||    
T  56504625 ggaaggagcaagtgcaagaaatagaagacattgggaggagagggctttgg 56504576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 904122 - 904170
Alignment:
Q  173 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||||||||| ||||||||| ||||||  ||||||||||||||||    
T  904122 gaaggagcaagtggaagaaatagaagacattcggaggagagggctttgg 904170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 3127219 - 3127119
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| |||||||||||||| |||||  |||| |||||       ||||||||||| ||  ||||||||| |||||||||| | |||||||||    
T  3127219 aggctttgtttg-gagtttggaggggaggggaggggaggattttggaaaaaaggaaggagcaaatgaaagaaatagaagacattgagaagtgagggcttt 3127121  T
Q  220 gg 221  Q
    ||    
T  3127120 gg 3127119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 21081215 - 21081332
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg-----nnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggaga 212  Q
    ||||||||||||||||||||||||||||||| |||  ||||| ||||            ||||||||||||||| ||||||||| |||||||||||| ||    
T  21081215 ttaggctttgtttgcgagtttggaggggaagagaggggaggggtttgaaaaaaaaagaaggaaggagcaagtggaagaaatagatgacattgagagggga 21081314  T
Q  213 gggctttggggggttcat 230  Q
      | ||||| ||||||||    
T  21081315 atgttttggagggttcat 21081332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 18964940 - 18964893
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    ||||| ||||||||| |||||||||||||| |||||| ||||||||||    
T  18964940 tttagactttgtttgggagtttggaggggaggggagaggagggttttg 18964893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 28880029 - 28880068
Alignment:
Q  250 attgtattggatgaggattttagaggatttatatgaattc 289  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  28880029 attgtattgaatgaggattttggaggatttatatgaattc 28880068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 29576348 - 29576305
Alignment:
Q  115 tctttaggctttgtttgcgagtttggaggggaagggagatgagg 158  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||    
T  29576348 tctttagactttgtttgcgagtttggaggggaatggagaggagg 29576305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 38137046 - 38137011
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||| |||||||||||||||||||||||||||||||    
T  38137046 tttatgctttgtttgcgagtttggaggggaagggag 38137011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 41844701 - 41844666
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41844701 tttaggctttgtttgggagtttggaggggaagggag 41844666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 20534192 - 20534158
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  20534192 ttaggctttgtttgggagtttggaggggaagggag 20534158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 21357978 - 21358024
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    ||||||| |||||| ||||||||||||||||||||  ||||||||||    
T  21357978 ttaggctctgtttgagagtttggaggggaagggaggggagggttttg 21358024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 22845048 - 22845082
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  22845048 ttaggctttgtttgggagtttggaggggaagggag 22845082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 29114445 - 29114411
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||| ||||||||||    
T  29114445 ttaggctttgtttgcgagtttggaagggaagggag 29114411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 8828029 - 8827984
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggtttt 163  Q
    |||| ||||||||||||||||| ||||| ||||||| |||||||||    
T  8828029 ttagactttgtttgcgagtttgaaggggcagggagaggagggtttt 8827984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 31340658 - 31340703
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    ||||||||||||| |||||||||||||||||||   ||||||||||    
T  31340658 taggctttgtttgggagtttggaggggaagggatgggagggttttg 31340703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 31529943 - 31529992
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||| | |||||||||| |||||    
T  31529943 ggaaggagcaagtggaagaaatagaagacatcgggaggagagggttttgg 31529992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 38366294 - 38366257
Alignment:
Q  115 tctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  38366294 tctttaggctttgtttgggagtttggagaggaagggag 38366257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 43793990 - 43793957
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaaggga 151  Q
    ||||||||||||| ||||||||||||||||||||    
T  43793990 ttaggctttgtttacgagtttggaggggaaggga 43793957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 45022875 - 45022818
Alignment:
Q  173 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 230  Q
    |||||||||||||| | |||||| |||| |||||||| ||||||||| | ||||||||    
T  45022875 gaaggagcaagtggaaaaaataggggactttgagaggggagggctttagtgggttcat 45022818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 48417659 - 48417614
Alignment:
Q  244 tcaaaaattgtattggatgaggattttagaggatttatatgaattc 289  Q
    ||||||||||||||||| ||||||||| |||| | |||||||||||    
T  48417659 tcaaaaattgtattggaggaggattttggagggtctatatgaattc 48417614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 48620204 - 48620256
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 225  Q
    |||||||| |||||| |||||||||||||||||  ||||| |||||||||||||    
T  48620204 ggaaggagtaagtggaagaaatagaggacattggaaggag-gggctttgggggg 48620256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 48620545 - 48620512
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaaggga 151  Q
    ||||||||||||||||||||||||||||| ||||    
T  48620545 ttaggctttgtttgcgagtttggaggggagggga 48620512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 55813823 - 55813794
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaa 147  Q
    ||||||||||||||||||||||||||||||    
T  55813823 ttaggctttgtttgcgagtttggaggggaa 55813794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 13269877 - 13269925
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 220  Q
    ||||||||||||||| ||||||||| ||||| | || ||||||||||||    
T  13269877 ggaaggagcaagtggaagaaatagaagacatcgtgaagagagggctttg 13269925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 21295940 - 21295980
Alignment:
Q  124 tttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||| |||||||||||||||||||| | |||||||||    
T  21295940 tttgtttgggagtttggaggggaagggaggttagggttttg 21295980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 27485451 - 27485419
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||||||| |||||||||    
T  27485451 aggctttgtttgcgagtttggagtggaagggag 27485419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 31187303 - 31187202
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| |||||||||||||| |||||  || |||||||       ||||| ||||| ||| ||||||  | ||||||  ||||||||||||||    
T  31187303 aggctttgtttgggagtttggaggggacgggaggggatggttttggaaaaaaggaagaagcaactggaagaaattaaagacattaggaggagagggcttt 31187204  T
Q  220 gg 221  Q
    ||    
T  31187203 gg 31187202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 31419100 - 31419060
Alignment:
Q  124 tttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  31419100 tttgtttgcgagtttggagggaaagggagccgagggttttg 31419060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 32648822 - 32648866
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||||||| | ||||||||||||||||||  ||||||||||    
T  32648822 aggctttgtttgggggtttggaggggaagggaggggagggttttg 32648866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 33500392 - 33500424
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||| ||||||||||    
T  33500392 aggctttgtttgcgagtttggaagggaagggag 33500424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 45971486 - 45971538
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 224  Q
    |||| |||||||||| |||||||||||| | ||||||| ||||| ||||||||    
T  45971486 ggaatgagcaagtggaagaaatagaggaaaatgagaggggagggttttggggg 45971538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 3658722 - 3658616
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||| |||    
T  3658722 ttaggctttgtttgggagtttggaggggaggggaggggagggttttggaaagaaggaaggagcaagtggaagaaatagaagacattgggaggagagagct 3658623  T
Q  218 ttggggg 224  Q
    |||||||    
T  3658622 ttggggg 3658616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 33406841 - 33406741
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| |||||||||||||| |||||  |||||||||        ||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  33406841 aggctttgtttgggagtttggaggggaggggaggggagggttttaaaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggcttt 33406742  T
Q  220 g 220  Q
    |    
T  33406741 g 33406741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 38505547 - 38505436
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagaggg 215  Q
    |||||||||||||||||||||||||||||||||||||  || || || |       |||| |||||||||| |||||||||||| | || |||| |||||    
T  38505547 ctttaggctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggaggg 38505448  T
Q  216 ctttggggggtt 227  Q
    ||||||||||||    
T  38505447 ctttggggggtt 38505436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 23620950 - 23620901
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  23620950 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 23620901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 33113798 - 33113749
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  33113798 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 33113749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 34652208 - 34652159
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  34652208 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 34652159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 19644323 - 19644367
Alignment:
Q  244 tcaaaaattgtattggatgaggattttagaggatttatatgaatt 288  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  19644323 tcaaaaattgtattggatgagggttttggaggatttatatgaatt 19644367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 36747165 - 36747270
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagaggg 215  Q
    ||||||||||||||| |||||||||||||| |||||  ||||||||| |        |||||||||||||| ||||||||| |||||||  |||||||||    
T  36747165 tttaggctttgtttgagagtttggaggggaggggaggggagggttttggaaaaaaatgaaggagcaagtggaagaaatagaagacattggaaggagaggg 36747264  T
Q  216 ctttgg 221  Q
     |||||    
T  36747265 ttttgg 36747270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 7667376 - 7667272
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggtttt-gnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 216  Q
    |||||||||||||| |||||||||||||| |||||  ||||||||| |        ||| |||||||||| ||||||||| ||||||| |||||||| ||    
T  7667376 ttaggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaatagaatgagcaagtggaagaaatagaagacattgggaggagagagc 7667277  T
Q  217 tttgg 221  Q
    |||||    
T  7667276 tttgg 7667272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 5968253 - 5968151
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||||| ||||||| | |||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| ||||| || |||    
T  5968253 ttaggctttgtttgggagtttgaaagggaggggaggggagggttttggaaaaa-ggaaggagcaagtggaagaaatagaagacattgggaggaaagcgct 5968155  T
Q  218 ttgg 221  Q
    ||||    
T  5968154 ttgg 5968151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 28437699 - 28437650
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||| | ||||||| ||||||||||||||||    
T  28437699 ggaaggagcaagtggaagaaataaaagacattgggaggagagggctttgg 28437650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 42620508 - 42620459
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  42620508 ggaatgagcaagtggaagaaatagaagacattgggaggagagggctttgg 42620459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 1277802 - 1277846
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttt 162  Q
    ||||| |||||||||||||||| |||||||||||| |||||||||    
T  1277802 ttaggttttgtttgcgagtttgaaggggaagggaggtgagggttt 1277846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 4058348 - 4058316
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||||    
T  4058348 aggctttgtttgcgagtttggaggggaagggag 4058316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 16805776 - 16805744
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||||    
T  16805776 aggctttgtttgcgagtttggaggggaagggag 16805744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 46612011 - 46611967
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttt 162  Q
    |||||||||||||||||||||||||||||| |||  |||||||||    
T  46612011 ttaggctttgtttgcgagtttggaggggaaaggaagtgagggttt 46611967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 34651868 - 34651903
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||| ||||||||||||||||||||    
T  34651868 tttaggctttgtttgggagtttggaggggaagggag 34651903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 30081236 - 30081270
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  30081236 ttaggctttgtttgtgagtttggaggggaagggag 30081270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 151
Target Start/End: Original strand, 33113458 - 33113492
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaaggga 151  Q
    ||||||||||||||| |||||||||||||||||||    
T  33113458 tttaggctttgtttgggagtttggaggggaaggga 33113492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 149
Target Start/End: Original strand, 38137821 - 38137851
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||||||||||||    
T  38137821 taggctttgtttgcgagtttggaggggaagg 38137851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 17884393 - 17884364
Alignment:
Q  117 tttaggctttgtttgcgagtttggagggga 146  Q
    ||||||||||||||||||||||||||||||    
T  17884393 tttaggctttgtttgcgagtttggagggga 17884364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 19644225 - 19644274
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||| | |||||||||| ||||| |||||||    
T  19644225 ggaaggagcaagtggaagaaatacaagacattgagatgagagagctttgg 19644274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 33188057 - 33188024
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||| ||||||    
T  33188057 ctttaggctttgtttgcgagtttggagaggaagg 33188024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 33871776 - 33871809
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaaggga 151  Q
    ||||||||||||||||||||||||||||| ||||    
T  33871776 ttaggctttgtttgcgagtttggaggggagggga 33871809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 36747560 - 36747519
Alignment:
Q  123 ctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    ||||||||| ||||||||||||||||||| | ||||||||||    
T  36747560 ctttgtttgagagtttggaggggaagggaaaggagggttttg 36747519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 7666982 - 7667014
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||| ||||||||||||||||||||    
T  7666982 aggctttgtttgggagtttggaggggaagggag 7667014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 152
Target Start/End: Complemental strand, 15749154 - 15749126
Alignment:
Q  124 tttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||    
T  15749154 tttgtttgcgagtttggaggggaagggag 15749126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 19791563 - 19791591
Alignment:
Q  124 tttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||    
T  19791563 tttgtttgcgagtttggaggggaagggag 19791591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 28437359 - 28437391
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||| ||||||||||||||||||||    
T  28437359 aggctttgtttgagagtttggaggggaagggag 28437391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 33872263 - 33872231
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||||||||||| |||||    
T  33872263 aggctttgtttgcgagtttggaggggaggggag 33872231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 38236055 - 38236023
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||| ||||||||||||||||||||    
T  38236055 aggctttgtttgggagtttggaggggaagggag 38236023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 41471377 - 41471409
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||| ||||||||    
T  41471377 aggctttgtttgcgagtttggaggagaagggag 41471409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 42382958 - 42382926
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||| |||||||||||||||||||||||||||    
T  42382958 aggctctgtttgcgagtttggaggggaagggag 42382926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 42854116 - 42854152
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||| || |||||||||||||||||    
T  42854116 ctttaggctttgtttgtgaatttggaggggaagggag 42854152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 43189120 - 43189076
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||||||| ||||||||| ||||||||||| ||||| ||||    
T  43189120 aggctttgtttgggagtttggatgggaagggagaggagggctttg 43189076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 46442581 - 46442613
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||| ||||||||||||||||||||||||    
T  46442581 aggctttggttgcgagtttggaggggaagggag 46442613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 46745780 - 46745692
Alignment:
Q  135 gtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 224  Q
    |||||||||||| |||||  ||||||||||       ||||||||||||||| | ||||||| |||| ||||||| |||| |||||||||    
T  46745780 gtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtggaaaaaatagaagaca-tgagaggggaggactttggggg 46745692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 35700932 - 35701033
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||  ||||||||| ||||||| ||||||||||||||    
T  35700932 aggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtgaaagaaatagaagacattgggaggagagggcttt 35701031  T
Q  220 gg 221  Q
    ||    
T  35701032 gg 35701033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 35704583 - 35704681
Alignment:
Q  121 ggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| ||||||||| |||||||||  ||||||||||       ||||||| ||||||| ||||||||||||||||| |||  |||||||||    
T  35704583 ggctttgtttgcaagtttggagaggaagggaggggagggttttgggaaaaaggaaggaacaagtggaagaaatagaggacattgggagaggagggcttt 35704681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 38302510 - 38302461
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  38302510 ggaaggagcaagtggaagaaatagaagacattgagaggagagggctttgg 38302461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 10437857 - 10437965
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 218  Q
    ||||||||||||||||||||||||||||||||||| || || || |       |||| |||||||||| |||||||||| | | || |||| |||| |||    
T  10437857 taggctttgtttgcgagtttggaggggaagggagaggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagagaaaaatgggaggggaggtctt 10437956  T
Q  219 tggggggtt 227  Q
    |||||||||    
T  10437957 tggggggtt 10437965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 10295354 - 10295456
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaaggga-gatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 218  Q
    |||||||| ||| ||||||| |||||| |||| || ||||||||||       ||||||||||||||| ||||||||| ||||||| ||||||| |||||    
T  10295354 aggctttgattgggagtttgaaggggaggggatgaggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagatggctt 10295453  T
Q  219 tgg 221  Q
    |||    
T  10295454 tgg 10295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 27480375 - 27480278
Alignment:
Q  124 tttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||| ||||||| ||||||  ||||  ||||||||||       ||||| ||||||||| ||||||||| ||||||| ||||||||||||||||    
T  27480375 tttgtttgggagtttgaaggggagaggaggggagggttttggaaaaaaggaagaagcaagtggaagaaatagaagacattgggaggagagggctttgg 27480278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 4649139 - 4649096
Alignment:
Q  177 gagcaagtgggagaaatagaggacattgagaggagagggctttg 220  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  4649139 gagcaagtggaagaaatagaagacattgagaggagagggctttg 4649096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 35708962 - 35708855
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttg-nnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 218  Q
    |||||||||||| ||||||||||||||||||||  |||||||| |        |||||||| |||||| |||||| ||||||||||  ||||| ||||||    
T  35708962 aggctttgtttgtgagtttggaggggaagggaggggagggtttggaaaaaaaaggaaggagtaagtggaagaaattgaggacattggaaggag-gggctt 35708864  T
Q  219 tggggggtt 227  Q
    |||||||||    
T  35708863 tggggggtt 35708855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 1935275 - 1935241
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||||||    
T  1935275 ttaggctttgtttgcgagtttggaggggaagggag 1935241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 1658101 - 1658150
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  1658101 ggaaggagcaagtggaagaaatagaagacattgggaggagaggactttgg 1658150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 13569260 - 13569293
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||||||||||||||||||    
T  13569260 taggctttgtttgcgagtttggaggggaagggag 13569293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 26149527 - 26149576
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||| ||||||| ||||||||| ||||||| ||||||||||||||||    
T  26149527 ggaaggatcaagtggaagaaatagaagacattgggaggagagggctttgg 26149576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 5772545 - 5772577
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||||||||||||||    
T  5772545 tttaggctttgtttgcgagtttggaggggaagg 5772577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 6491086 - 6491118
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||||    
T  6491086 aggctttgtttgcgagtttggaggggaagggag 6491118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 32824531 - 32824567
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32824531 ctttaggctttgtttgcgagtttggaggagaagggag 32824567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 152
Target Start/End: Original strand, 9096195 - 9096226
Alignment:
Q  121 ggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||||||||||||||||    
T  9096195 ggctttgtttgcgagtttggaggggaagggag 9096226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 18670902 - 18670937
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||| ||||||||||||||||||||    
T  18670902 tttaggctttgtttgtgagtttggaggggaagggag 18670937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 32125320 - 32125277
Alignment:
Q  246 aaaaattgtattggatgaggattttagaggatttatatgaattc 289  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||    
T  32125320 aaaaattgtattggaggaggattttagagggtttgtatgaattc 32125277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 6816258 - 6816296
Alignment:
Q  174 aaggagcaagtgggagaaatagaggacattgagaggaga 212  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  6816258 aaggagcaagtggaagaaatagatgacattgagaggaga 6816296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 10295751 - 10295717
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  10295751 ttaggctttgtttgggagtttggaggggaagggag 10295717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 10842922 - 10842956
Alignment:
Q  115 tctttaggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||| |||||    
T  10842922 tctttaggctttgtttgcgagtttggaggagaagg 10842956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 17093162 - 17093128
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  17093162 ttaggctttgtttgggagtttggaggggaagggag 17093128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 25598585 - 25598619
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  25598585 ttaggctttgtttgggagtttggaggggaagggag 25598619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 35683682 - 35683575
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||||||||||| ||||||||||||  || ||||| |       |||| |||||||||| ||||||||| || | || |||  ||||||||     
T  35683682 aggctttgtttgcgagtttgaaggggaagggaggggaaggtttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggcttc 35683583  T
Q  220 ggggggtt 227  Q
    ||||||||    
T  35683582 ggggggtt 35683575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 38120011 - 38120045
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  38120011 ttaggctttgtttgggagtttggaggggaagggag 38120045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 39649440 - 39649474
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||||||||||| |||||||    
T  39649440 ttaggctttgtttgcgagtttggagggcaagggag 39649474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 2020905 - 2020954
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||  ||||||| |||||||| |||||||    
T  2020905 ggaaggagcaagtggaagaaatagtagacattgggaggagagagctttgg 2020954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 6491476 - 6491427
Alignment:
Q  175 aggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 224  Q
    |||||||||||| ||||||||| || ||||  ||||||||||||||||||    
T  6491476 aggagcaagtggaagaaatagaagaaattggtaggagagggctttggggg 6491427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 6620504 - 6620471
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaaggga 151  Q
    ||||||||||||||||||||| ||||||||||||    
T  6620504 ttaggctttgtttgcgagttttgaggggaaggga 6620471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 9096341 - 9096386
Alignment:
Q  244 tcaaaaattgtattggatgaggattttagaggatttatatgaattc 289  Q
    |||| |||||||||||| ||||||||| |||| |||||||||||||    
T  9096341 tcaacaattgtattggaggaggattttggagggtttatatgaattc 9096386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 9684607 - 9684640
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaaggga 151  Q
    |||||||||||||| |||||||||||||||||||    
T  9684607 ttaggctttgtttgggagtttggaggggaaggga 9684640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 148
Target Start/End: Original strand, 35683290 - 35683319
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaag 148  Q
    ||||||||||||||||||||||||||||||    
T  35683290 taggctttgtttgcgagtttggaggggaag 35683319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 1658439 - 1658395
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||||||| ||||||| ||||||||||||  ||||||||||    
T  1658439 aggctttgtttgagagtttgaaggggaagggaggggagggttttg 1658395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 10376994 - 10377026
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||| ||||||||||    
T  10376994 tttaggctttgtttgcgagttttgaggggaagg 10377026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 13449865 - 13449897
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattg 204  Q
    |||||||||||||||||||||| ||||||||||    
T  13449865 ggaaggagcaagtgggagaaattgaggacattg 13449897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 17092823 - 17092871
Alignment:
Q  173 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||||||||| ||| ||||| |||||||  |||||||||||||||    
T  17092823 gaaggagcaagtggaagatatagaagacattggaaggagagggctttgg 17092871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 21571929 - 21571961
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||| ||||||||||    
T  21571929 tttaggctttgtttgcgagttttgaggggaagg 21571961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 33718445 - 33718413
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaaggga 151  Q
    ||||||||||||| |||||||||||||||||||    
T  33718445 taggctttgtttgggagtttggaggggaaggga 33718413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 43496379 - 43496407
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaag 148  Q
    |||||||||||||||||||||||||||||    
T  43496379 aggctttgtttgcgagtttggaggggaag 43496407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 34272384 - 34272488
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnn-ggaaggagcaagtgggagaaatagaggacattgagaggagagggc 216  Q
    |||||||||||||| ||||||| ||||||||||||  |||| |||||        ||||||||||||||| ||||||||| |||||||||||||||||||    
T  34272384 ttaggctttgtttgggagtttgaaggggaagggaggggaggattttggaaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagggc 34272483  T
Q  217 tttgg 221  Q
    |||||    
T  34272484 tttgg 34272488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 3404782 - 3404681
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| |||||||||||||| |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||  ||||||| ||||||    
T  3404782 aggctttgtttgggagtttggaggggaggggaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattaggaggagaaggcttt 3404683  T
Q  220 gg 221  Q
    ||    
T  3404682 gg 3404681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 1942241 - 1942141
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||  ||||||||||||||||||||  ||||||||||       ||||||| ||||||| ||||||||| ||||||| ||||||||||||||    
T  1942241 aggctttgtttaggagtttggaggggaagggaggggagggttttgaaaaaa-ggaaggatcaagtggaagaaatagaagacattgggaggagagggcttt 1942143  T
Q  220 gg 221  Q
    ||    
T  1942142 gg 1942141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 37659743 - 37659639
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggc 216  Q
    |||||| |||||||| ||||||| ||||||||||||  ||||||||||       ||||||||  ||||| ||||||||| ||||||| |||||||||||    
T  37659743 tttaggttttgtttgggagtttgaaggggaagggaggggagggttttggaaaaaaggaaggagtgagtggaagaaatagaagacattgggaggagagggc 37659644  T
Q  217 tttgg 221  Q
    |||||    
T  37659643 tttgg 37659639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 36906062 - 36906160
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||||||||| |||||||||||||| |||||     |||||||       ||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  36906062 ttaggctttgtttgggagtttggaggggaggggag-----ggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggct 36906156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 6691 - 6791
Alignment:
Q  121 ggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 220  Q
    ||||||||||| |||||||||||  | |||||  ||||||||||       ||||||||||||||| ||||||||| ||||||| |||||||| ||||||    
T  6691 ggctttgtttgggagtttggaggataggggaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagagctttg 6790  T
Q  221 g 221  Q
    |    
T  6791 g 6791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 79823 - 79715
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatg-agggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctt 218  Q
    |||||||||||||||||||||||||||||||||  | ||| ||  |       |||| |||||||||| |||||||||||| | || |||| ||||||||    
T  79823 aggctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaaggaacgagcaagtggaagaaatagaggaaaatgggaggggagggctt 79724  T
Q  219 tggggggtt 227  Q
    |||||||||    
T  79723 tggggggtt 79715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 39193855 - 39193910
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 227  Q
    ||||| ||||||||| |||||||||| |||||| |||| |||||||||||||||||    
T  39193855 ggaagtagcaagtggaagaaatagagtacattgggaggggagggctttggggggtt 39193910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 21262786 - 21262740
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||||    
T  21262786 ttaggctttgtttgcgagtttggaggggaagggaaaggagggctttg 21262740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 1839636 - 1839669
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaaggga 151  Q
    ||||||||||||||||||||||||||||||||||    
T  1839636 ttaggctttgtttgcgagtttggaggggaaggga 1839669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 4734653 - 4734604
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  4734653 ggaaggagcaagtggaagaaatagaagacattgggaggagagggttttgg 4734604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 1941864 - 1941900
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||| ||||||||||||||||||||    
T  1941864 ctttaggctttgtttgggagtttggaggggaagggag 1941900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 23932767 - 23932735
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaaggga 151  Q
    |||||||||||||||||||||||||||||||||    
T  23932767 taggctttgtttgcgagtttggaggggaaggga 23932735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 34148398 - 34148442
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||    
T  34148398 aggctttgtttgggagtttggaggggaagggaggggagggttttg 34148442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 34304640 - 34304688
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 220  Q
    ||||||||||||||| ||||||||| |||||| ||| ||||||||||||    
T  34304640 ggaaggagcaagtggaagaaatagaagacattaagatgagagggctttg 34304688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 42651519 - 42651563
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||    
T  42651519 aggctttgtttgcgagtttgtagggaaagagagatgagggttttg 42651563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 26772852 - 26772817
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggaga 153  Q
    ||||||||||||||||||||||||||| ||||||||    
T  26772852 ttaggctttgtttgcgagtttggagggaaagggaga 26772817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 31297503 - 31297456
Alignment:
Q  173 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 220  Q
    |||||||||||||| ||||||||| ||||||| ||||||| |||||||    
T  31297503 gaaggagcaagtggaagaaatagaagacattgggaggagatggctttg 31297456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 35376839 - 35376727
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    ||||||||| ||||||||||  ||||| | |||||  |||||||||        ||||| |||||||||  |||||| |||||||||| ||| ||| |||    
T  35376839 ttaggctttctttgcgagttcagagggtaggggaggggagggttttaggaaaaaggaagaagcaagtggacgaaataaaggacattgaaaggggagagct 35376740  T
Q  218 ttggggggttcat 230  Q
    |||||||||||||    
T  35376739 ttggggggttcat 35376727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 3635683 - 3635641
Alignment:
Q  122 gctttgtttgcgagtttggaggggaagggagatgagggttttg 164  Q
    ||||||||||||||||||||||||||||||   ||||||||||    
T  3635683 gctttgtttgcgagtttggaggggaagggatgagagggttttg 3635641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 148
Target Start/End: Original strand, 27085218 - 27085248
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaag 148  Q
    |||||||||||||||||||||||||||||||    
T  27085218 ttaggctttgtttgcgagtttggaggggaag 27085248  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 31149799 - 31149874
Alignment:
Q  123 ctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagagg 198  Q
    ||||||||||||||||||||||||||||||  ||| ||||||        ||| |||||||||| |||||||||||    
T  31149799 ctttgtttgcgagtttggaggggaagggagtggagtgttttggaaaacatgaatgagcaagtggaagaaatagagg 31149874  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 1840028 - 1839999
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||    
T  1840028 aggctttgtttgcgagtttggaggggaagg 1839999  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 1840362 - 1840309
Alignment:
Q  172 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 225  Q
    ||||||||||||||| |||||| |||||||||  |||  |||||||||||||||    
T  1840362 ggaaggagcaagtggaagaaattgaggacattcggagaggagggctttgggggg 1840309  T

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Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 40677065 - 40677032
Alignment:
Q  124 tttgtttgcgagtttggaggggaagggagatgag 157  Q
    |||||||||||||||||| |||||||||||||||    
T  40677065 tttgtttgcgagtttggaagggaagggagatgag 40677032  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 41866329 - 41866296
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||||| |||||||||    
T  41866329 ctttaggctttgtttgcgagtttgaaggggaagg 41866296  T

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Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 1111337 - 1111305
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaaggg 150  Q
    ||||||||||||||||||||||||||| |||||    
T  1111337 ttaggctttgtttgcgagtttggagggaaaggg 1111305  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 9309758 - 9309722
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagggaga 153  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  9309758 tttaggctttgtttgtgagtttcgaggggaagggaga 9309722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 12319151 - 12319123
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaag 148  Q
    |||||||||||||||||||||||||||||    
T  12319151 aggctttgtttgcgagtttggaggggaag 12319123  T

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Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 13406299 - 13406343
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggagatgagggttt 162  Q
    |||||||||||||||| |||||||||| |||||||  ||||||||    
T  13406299 ttaggctttgtttgcgtgtttggagggaaagggaggggagggttt 13406343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 21174066 - 21174034
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||||||| |||||||||    
T  21174066 aggctttgtttgcgagtttggagtggaagggag 21174034  T

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Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 29611921 - 29611965
Alignment:
Q  177 gagcaagtgggagaaatagaggacattgagaggagagggctttgg 221  Q
    |||||||||| ||||||| | ||||||| ||||||||||||||||    
T  29611921 gagcaagtggaagaaatataagacattgggaggagagggctttgg 29611965  T

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Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 33230864 - 33230896
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||| ||||||||||||||||||||    
T  33230864 aggctttgtttgggagtttggaggggaagggag 33230896  T

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Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 36906452 - 36906420
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||| ||||||||||||||||||||    
T  36906452 aggctttgtttgggagtttggaggggaagggag 36906420  T

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Target: scaffold1163 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 1931 - 2034
Alignment:
Q  121 ggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 220  Q
    |||||||||||||||||||||||||||||||   || |  ||||       ||||||||||||||| ||||||||| || | || |||| ||||||||||    
T  1931 ggctttgtttgcgagtttggaggggaagggaagggaagactttgaaaaaaaggaaggagcaagtggaagaaatagaagaaaatgggaggggagggctttg 2030  T
Q  221 gggg 224  Q
    ||||    
T  2031 gggg 2034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 6969 - 6935
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||||||    
T  6969 ttaggctttgtttgcgagtttggaggggaagggag 6935  T

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Target: scaffold0051; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 7952 - 7918
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||||||    
T  7952 ttaggctttgtttgcgagtttggaggggaagggag 7918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 82666 - 82775
Alignment:
Q  119 taggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnn-ggaaggagcaagtgggagaaatagaggacattgagaggagagggct 217  Q
    |||||||| |||| |||||||||||| |||||||  ||||| ||||        ||||||||||||||| ||||||||| ||| ||||||| | ||||||    
T  82666 taggctttctttgtgagtttggagggtaagggaggggagggctttggaaaaaaaggaaggagcaagtggaagaaatagatgactttgagagaaaagggct 82765  T
Q  218 ttggggggtt 227  Q
    || |||||||    
T  82766 ttcgggggtt 82775  T

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Target: scaffold0717 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 1844 - 1810
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  1844 ttaggctttgtttgagagtttggaggggaagggag 1810  T

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Target: scaffold0248 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 403 - 373
Alignment:
Q  122 gctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||||||||||||||||||||    
T  403 gctttgtttgcgagtttggaggggaagggag 373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 35271 - 35305
Alignment:
Q  118 ttaggctttgtttgcgagtttggaggggaagggag 152  Q
    |||||||||||||| ||||||||||||||||||||    
T  35271 ttaggctttgtttgggagtttggaggggaagggag 35305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 35663 - 35562
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggagatgagggttttgnnnnnnnggaaggagcaagtgggagaaatagaggacattgagaggagagggcttt 219  Q
    |||||||||||| | |||||||| ||| | |||  ||||||||||       ||||||||||||||  ||||||||| ||||||| || ||||| |||||    
T  35663 aggctttgtttgggtgtttggagaggaggcgaggggagggttttggaaaaaaggaaggagcaagtgaaagaaatagaagacattgggaagagagagcttt 35564  T
Q  220 gg 221  Q
    ||    
T  35563 gg 35562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 6940 - 6969
Alignment:
Q  123 ctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||||||||||||||||||    
T  6940 ctttgtttgcgagtttggaggggaagggag 6969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 93309 - 93342
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||| |||||||||||||||||    
T  93309 ctttaggctttgtttgggagtttggaggggaagg 93342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 93705 - 93676
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagg 149  Q
    ||||||||||||||||||||||||||||||    
T  93705 aggctttgtttgcgagtttggaggggaagg 93676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 2231 - 2199
Alignment:
Q  120 aggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||| |||||||||||||||||||    
T  2231 aggctttgtttgcaagtttggaggggaagggag 2199  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 26247 - 26283
Alignment:
Q  116 ctttaggctttgtttgcgagtttggaggggaagggag 152  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  26247 ctttaggctttgtttacgagtttgaaggggaagggag 26283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 46555 - 46587
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||| ||||||||||    
T  46555 tttaggctttgtttgcgagttttgaggggaagg 46587  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 152232 - 152200
Alignment:
Q  117 tttaggctttgtttgcgagtttggaggggaagg 149  Q
    |||||||||||||||||||||| ||||||||||    
T  152232 tttaggctttgtttgcgagttttgaggggaagg 152200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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