View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21074_low_29 (Length: 273)
Name: NF21074_low_29
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21074_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 46555118 - 46555351
Alignment:
| Q |
23 |
cgaaaagccgacacaatcaatcaggaaatcccgnnnnnnnntatcattcacataataccaaccattgacaatctatcaacttgattgaactatatggaaa |
122 |
Q |
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| T |
46555118 |
cgaaaagccgacacaatcaatcaggaaatcccgaaaaaaa-tatcattcacataataccaaccattgacaatctatcaacttgattgaactatatggaaa |
46555216 |
T |
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| Q |
123 |
aacaaaccatcgacaggaaattcaagactgcataatacacaatctccgagtcgcagaatactatcaaattcaaatttgatcatttgtctggtcttcaatt |
222 |
Q |
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| T |
46555217 |
aacaaaccatcgacaggaaattcaagactgcataatacacaatctccgagtcgcagaatgctatcaaattcaaatttgatcatttatctggtcttcaatt |
46555316 |
T |
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| Q |
223 |
tagcatcccggttcgatttaaactcagtggaatac |
257 |
Q |
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| T |
46555317 |
tagcatcccggttcgatttaaactcagtggaatac |
46555351 |
T |
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Back To:
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 10822207 - 10822256
Alignment:
| Q |
158 |
tacacaatctccgagtcgcagaatactatcaaattcaaatttgatcattt |
207 |
Q |
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| T |
10822207 |
tacaccatctccgagtcgtagaatattatcaaatttaaatttgatcattt |
10822256 |
T |
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