View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21074_low_3 (Length: 792)
Name: NF21074_low_3
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21074_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 739; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 1 - 778
Target Start/End: Complemental strand, 7037264 - 7036486
Alignment:
| Q |
1 |
gaatattcgaattataaaggaaaaataggatcttcaccttttaagtatcttaggctacctggcaaccagttatagatgcggtttgtttaatattgtcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7037264 |
gaatattcgaattataaaggaaaaataggatcttcaccttttaagtatcttaggctacctggcaaccagttatagatgcggtttgtttaatattgtcaaa |
7037165 |
T |
|
| Q |
101 |
ttggaagaataatcagttgtccatcggtggttgcatggttattattaaatcaggattgtcagctctcctagtctattttctctctttttattcccaatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7037164 |
ttggaagaataatcagttgtccatcggtggttgcatggttattattaaatcaggattgtcagctctcctagtctattttctctctttttattcccaatag |
7037065 |
T |
|
| Q |
201 |
aagagggggattgggaataaataatttggggatttaatgcccttctaggaaaatgaaagttgaaattaagaaatgagggtttttggcattggtacagtgt |
300 |
Q |
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| T |
7037064 |
aagagggggattgggaataaataatttggggatttaatgcccttctaggaaaatgaaagttgaaattaagaaatgagggtttttggcattggtacagtgt |
7036965 |
T |
|
| Q |
301 |
tctatcaaatagatatggtgagaaagagatggggtgtttagagagggttggagaggcaattcggtatggtggaacgatatatgcaatatatatacacgtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7036964 |
tctatcaaatagatatggtgagaaagagatggggtgtttagagagggttggagaggcaattcggtatggtggaacgatatatgcaatatatatacacgtt |
7036865 |
T |
|
| Q |
401 |
caggacacacgaaatatgtattcggtaaaagaaacgtataaaatgttgatggagggattgataagtgttcctaatcaatcatggtcgaaggcttggcata |
500 |
Q |
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| T |
7036864 |
caagacacacgaaatatgtattcggtaaaagaaacgtataaaatgttgatggagggattgataagtgttcctaatcaatcatggtcgaaggcttggcata |
7036765 |
T |
|
| Q |
501 |
aatcaatcccgttaaaagttgcgtgcttagcttggagattatttcagaataaaatagctaccaaagataacttatttagaagaggagtcgtaggtcaagg |
600 |
Q |
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| T |
7036764 |
aatcaatcccgttaaaagttgtgtgcttagcttggagattatttcagaataaaatagctaccaaagataacttatttagaagaggagtcgtaggtcaagg |
7036665 |
T |
|
| Q |
601 |
atcccttcagtgtgtaggagattgtggagttaaagaatcggtttctcgtcc-nnnnnnnnagtgtccggttttggtagctaggagtttcctcggtatttc |
699 |
Q |
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| T |
7036664 |
atcccttcagtgtgtaggagattgtggagttaaagaatcggtttctcgtcctttttttttagtgtccggttttggtagctaggagtttcctcggtatttc |
7036565 |
T |
|
| Q |
700 |
aaaaagatatcttgttgcatttagatcaatttgaaggactggtgggtggtggaaggaagagttaatgtggtgaagtttg |
778 |
Q |
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| T |
7036564 |
aaaaagatatcttgttgcatttagatcaatttgaaggactggtgggtggtggaaggaagagttaatgtggtgaagtttg |
7036486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 479 - 570
Target Start/End: Complemental strand, 18943316 - 18943225
Alignment:
| Q |
479 |
tcatggtcgaaggcttggcataaatcaatcccgttaaaagttgcgtgcttagcttggagattatttcagaataaaatagctaccaaagataa |
570 |
Q |
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|||||||||| ||||||||||||| || | |||| ||||||| |||| || ||||||||| | ||||| |||| | ||||||| |||||||| |
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| T |
18943316 |
tcatggtcgagggcttggcataaagcagttccgtcaaaagtttcgtgttttgcttggagagtgtttcaaaatagagtagctacaaaagataa |
18943225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 481 - 551
Target Start/End: Original strand, 24828175 - 24828245
Alignment:
| Q |
481 |
atggtcgaaggcttggcataaatcaatcccgttaaaagttgcgtgcttagcttggagattatttcagaata |
551 |
Q |
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|||||| || |||||||||||||| |||||||||||||| | || |||| |||||||||||||| |||| |
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| T |
24828175 |
atggtcaaaagcttggcataaatcggtcccgttaaaagtttcatgtttagtgtggagattatttcaaaata |
24828245 |
T |
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