View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21074_low_34 (Length: 220)
Name: NF21074_low_34
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21074_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 13924528 - 13924716
Alignment:
| Q |
18 |
gagagtaccatctatgggattgtaaacaaccaactcagactgaaattggagaagtactttcccatcctcaaaaacatacagtaacctttcatnnnnnnnn |
117 |
Q |
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| T |
13924528 |
gagagtaccatctatgggattgtaaacaaccaactcagagtgaaattggagaagtactttcccatcctcaaaaacatacagtaacctttcataaaaacaa |
13924627 |
T |
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| Q |
118 |
nnnnnnnnnnnntcttccatgctaggaagacggaacaatttaatccagaattcatcatttccaaactcctttaaaagccaaacatccga |
206 |
Q |
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| T |
13924628 |
aaaccataaggatcttccatgctaggaagacggaacaatttaatccagaattcatcatttccaaactccttcaaaagccaaacatccga |
13924716 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 7160743 - 7160805
Alignment:
| Q |
141 |
aggaagacggaacaatttaatccagaattcatcatttccaaactcctttaaaagccaaacatc |
203 |
Q |
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| T |
7160743 |
aggaagacggaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc |
7160805 |
T |
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