View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21074_low_4 (Length: 530)

Name: NF21074_low_4
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21074_low_4
NF21074_low_4
[»] chr7 (14 HSPs)
chr7 (16-446)||(4647063-4647495)
chr7 (447-511)||(4647476-4647540)
chr7 (15-149)||(17245446-17245580)
chr7 (337-395)||(4630780-4630838)
chr7 (329-369)||(4846225-4846265)
chr7 (329-371)||(4636708-4636750)
chr7 (335-371)||(4661649-4661685)
chr7 (335-371)||(4666786-4666822)
chr7 (335-395)||(4672527-4672587)
chr7 (339-380)||(4653375-4653416)
chr7 (335-371)||(4643522-4643558)
chr7 (339-371)||(4697398-4697430)
chr7 (459-511)||(4712156-4712208)
chr7 (459-511)||(4846096-4846148)
[»] scaffold0252 (1 HSPs)
scaffold0252 (19-235)||(4846-5062)
[»] chr2 (1 HSPs)
chr2 (17-235)||(25101607-25101825)
[»] chr3 (5 HSPs)
chr3 (19-203)||(8562975-8563159)
chr3 (17-203)||(6009013-6009199)
chr3 (17-166)||(17783823-17783976)
chr3 (17-166)||(19085342-19085495)
chr3 (17-166)||(19092450-19092603)
[»] chr8 (2 HSPs)
chr8 (17-205)||(15993397-15993585)
chr8 (17-203)||(14502697-14502883)
[»] chr5 (2 HSPs)
chr5 (17-203)||(22289352-22289538)
chr5 (20-205)||(28243619-28243804)
[»] chr6 (1 HSPs)
chr6 (37-166)||(26904527-26904656)
[»] chr4 (1 HSPs)
chr4 (459-511)||(18925823-18925875)


Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 4647063 - 4647495
Alignment:
Q  16 acatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgag 115  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |    
T  4647063 acatcatcatcaagagaggttatacggtttaactttttccgagctgttgccgatgcatgaaaaaactttgtatttctatcaccatccttgtacaagtgtg 4647162  T
Q  116 ctttagcacattgatgccaata--ggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcactagtagct 213  Q
    ||||||||| |||| |||||||  ||||||||||| ||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||    
T  4647163 ctttagcacgttgacgccaatataggcatcgtcttaggacatcagccgttgcaagcgtttccttagctcaaacatgcgagtttggtcctcaccagtagct 4647262  T
Q  214 tgcagccgtgtgtcttgcatttctttgcaacaattgtcaatatcgcgctttaaattgtggcaatgagtctttctccagacggacatatcctccgcgcatg 313  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  4647263 tgcagccgcgtgtcttgcatttctttgcaacaattgtcaatatcgcgctttaaattgtggcaatgagtctttctccagacggacatatccttcccgcatg 4647362  T
Q  314 atattaattttggaataatcattgaagcttgattgaaagattaactctttcaatttgattccttcctcctggagagtacatatgaacaagcacaatcctt 413  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4647363 atatcaattttggaataatcgttgaagcttgattgaaagattaactctttcaatttgattccttcctccttgagagtacatatgaacaagcacaatcctt 4647462  T
Q  414 attgacagggagcaccagcccatgcaatcacat 446  Q
    |||||||||||||||||||||||||||||||||    
T  4647463 attgacagggagcaccagcccatgcaatcacat 4647495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 4647476 - 4647540
Alignment:
Q  447 accagcccatgcaatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaa 511  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  4647476 accagcccatgcaatcacatcagcataatgttcagccaaaatatcatctataaacatatgaaaaa 4647540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 17245446 - 17245580
Alignment:
Q  15 gacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtga 114  Q
    ||||||||| ||||||||  | || || ||||||||||| | |||| | || |||||||||||||| || || ||||||||||||||||||||||| |||    
T  17245446 gacatcatcgtcaagagaaataatgcgatttacctttttacgagctgtagcagatgcatgaaaaaatttggtgtttctatcgccatccttgtaccaatga 17245545  T
Q  115 gctttagcacattgatgccaataggcatcgtcttg 149  Q
    |  || |||| |||  ||||||| ||||| |||||    
T  17245546 gtctttgcacgttgccgccaataagcatcatcttg 17245580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 4630780 - 4630838
Alignment:
Q  337 gaagcttgattgaaagattaactctttcaatttgattccttcctcctggagagtacata 395  Q
    |||||||||||||||||||||||||||||||||||   |||||| || |||||||||||    
T  4630780 gaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacata 4630838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 4846265 - 4846225
Alignment:
Q  329 taatcattgaagcttgattgaaagattaactctttcaattt 369  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  4846265 taatcgttgaagcttgattgaaagattaactctttcaattt 4846225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 4636708 - 4636750
Alignment:
Q  329 taatcattgaagcttgattgaaagattaactctttcaatttga 371  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  4636708 taatcgttgaagcttgattgaaagataaactctttcaatttga 4636750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 4661649 - 4661685
Alignment:
Q  335 ttgaagcttgattgaaagattaactctttcaatttga 371  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4661649 ttgaagcttgattgaaagatcaactctttcaatttga 4661685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 4666786 - 4666822
Alignment:
Q  335 ttgaagcttgattgaaagattaactctttcaatttga 371  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4666786 ttgaagcttaattgaaagattaactctttcaatttga 4666822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 4672527 - 4672587
Alignment:
Q  335 ttgaagcttgattgaaagattaactctttcaatttgattccttcctcctggagagtacata 395  Q
    ||||||||| || ||||||||||||||||||||||||   |||||| || |||||||||||    
T  4672527 ttgaagcttaatagaaagattaactctttcaatttgagagcttccttcttgagagtacata 4672587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 4653375 - 4653416
Alignment:
Q  339 agcttgattgaaagattaactctttcaatttgattccttcct 380  Q
    |||||||||| |||||||||||||||||||||| | ||||||    
T  4653375 agcttgattgtaagattaactctttcaatttgagtgcttcct 4653416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 4643522 - 4643558
Alignment:
Q  335 ttgaagcttgattgaaagattaactctttcaatttga 371  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  4643522 ttgaagcttgattgaaagattagctctttcaagttga 4643558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 371
Target Start/End: Complemental strand, 4697430 - 4697398
Alignment:
Q  339 agcttgattgaaagattaactctttcaatttga 371  Q
    ||||||||||||||||||| |||||||||||||    
T  4697430 agcttgattgaaagattaagtctttcaatttga 4697398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 511
Target Start/End: Complemental strand, 4712208 - 4712156
Alignment:
Q  459 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaa 511  Q
    |||||||||||| ||||||||| ||||||||||||  ||||| || |||||||    
T  4712208 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaa 4712156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 511
Target Start/End: Complemental strand, 4846148 - 4846096
Alignment:
Q  459 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaa 511  Q
    |||||||||||||||| ||||| ||||||||||||  ||||| || |||||||    
T  4846148 aatcacatcagcatatagttcagccaaaatatcattgataaatatctgaaaaa 4846096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 5062 - 4846
Alignment:
Q  19 tcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagctt 118  Q
    |||||||||||||| |||||||| |||||||||||||| ||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||    
T  5062 tcatcatcaagagatgttatacgatttacctttttccaggctgttgccgaggcatgaaaaaacttcgtatttctatcaccatccttgtaccagtgagttt 4963  T
Q  119 tagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcactagtagcttgcag 218  Q
    |||||| |||| |||||||||||||||||||||||| ||  |||||||   |||||| ||| |||| ||| | | |||| ||||| | || ||| ||||     
T  4962 tagcacgttgacgccaataggcatcgtcttgggacaacaagcgttgcatacgtttccgaagttcaagcatacgattttgatcctccccagaagcatgcat 4863  T
Q  219 ccgtgtgtcttgcattt 235  Q
    |||||||||||||||||    
T  4862 ccgtgtgtcttgcattt 4846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 25101825 - 25101607
Alignment:
Q  17 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 116  Q
    ||||||||| ||| |||||||||| ||||||||||||||  ||| ||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  25101825 catcatcatgaagggaggttatacagtttacctttttccgggctgttgtcgaggcatgaaaaaactttgtatttctgtcgccatccttataccagtgagc 25101726  T
Q  117 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcactagtagcttgc 216  Q
    |||||||| |||| ||||||||||||||||||||||||  |  | ||||| |  ||||||||| |||| |||||   |||||||||| | || ||| | |    
T  25101725 tttagcacgttgacgccaataggcatcgtcttgggacattaagctttgcatgcatttcctaaggtcaagcatgcggttttggtcctccccagaagcatac 25101626  T
Q  217 agccgtgtgtcttgcattt 235  Q
    || ||| ||||||||||||    
T  25101625 agtcgtttgtcttgcattt 25101607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 8563159 - 8562975
Alignment:
Q  19 tcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagctt 118  Q
    ||||| ||||||||| |||| || |||||||| |||| || | ||||||| ||||||||||||||||||||||| || |||||||| ||| |||||| ||    
T  8563159 tcatcgtcaagagagtttatgcgatttaccttcttccgagttgttgccgaggcatgaaaaaactttgtatttctgtcaccatccttatactagtgagttt 8563060  T
Q  119 tagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctc 203  Q
    |||||| |||| |||||||||||||||||||||| ||||  |||||||   |||||| |||||||| ||||| |||||| |||||    
T  8563059 tagcacgttgacgccaataggcatcgtcttgggatagcaatcgttgcatacgtttccgaagctcaaccatgcgagtttgatcctc 8562975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 6009013 - 6009199
Alignment:
Q  17 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 116  Q
    |||||||||||||||| |||||||| |||||||| || | |||  ||||||| || ||||||||||| ||||| |  || |||| ||| ||||| || |     
T  6009013 catcatcatcaagagaagttatacgatttaccttctttcgagccgttgccgaagcgtgaaaaaacttggtattacggtcaccatacttataccaatgggt 6009112  T
Q  117 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctc 203  Q
    ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||||    
T  6009113 ttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcctc 6009199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 17783976 - 17783823
Alignment:
Q  17 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 116  Q
    ||||||||||||||||||||||||| |||||||| || | |||  ||||||| |||||||||||||  ||||| |  ||||||||||| ||||| || |     
T  17783976 catcatcatcaagagaggttatacgatttaccttctttcgagccgttgccgaagcatgaaaaaactaggtattacggtcgccatccttataccaatgggt 17783877  T
Q  117 tttagcacattgatgcc----aataggcatcgtcttgggacagcagccgttgca 166  Q
    ||| ||   |||| |||    |||| ||||| ||||||||||||||||||||||    
T  17783876 ttttgcgtgttgacgccaattaataagcatcatcttgggacagcagccgttgca 17783823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 19085495 - 19085342
Alignment:
Q  17 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 116  Q
    ||||||||||||||||||||||||| |||||||| || | |||  ||||||| |||||||||||||  ||||| |  ||||||||||| ||||| || |     
T  19085495 catcatcatcaagagaggttatacgatttaccttctttcgagccgttgccgaagcatgaaaaaactaggtattacggtcgccatccttataccaatgggt 19085396  T
Q  117 tttagcacattgatgcc----aataggcatcgtcttgggacagcagccgttgca 166  Q
    ||| ||   |||| |||    |||| ||||| ||||||||||||||||||||||    
T  19085395 ttttgcgtgttgacgccaattaataagcatcatcttgggacagcagccgttgca 19085342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 19092603 - 19092450
Alignment:
Q  17 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 116  Q
    ||||||||||||||||||||||||| |||||||| || | |||  ||||||| |||||||||||||  ||||| |  ||||||||||| ||||| || |     
T  19092603 catcatcatcaagagaggttatacgatttaccttctttcgagccgttgccgaagcatgaaaaaactaggtattacggtcgccatccttataccaatgggt 19092504  T
Q  117 tttagcacattgatgcc----aataggcatcgtcttgggacagcagccgttgca 166  Q
    ||| ||   |||| |||    |||| ||||| ||||||||||||||||||||||    
T  19092503 ttttgcgtgttgacgccaattaataagcatcatcttgggacagcagccgttgca 19092450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 15993397 - 15993585
Alignment:
Q  17 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 116  Q
    |||||||||||||||| |||||||| |||||||| || | |||  | ||||| || ||||||||||| ||||| |  ||||||||||| ||||| || |     
T  15993397 catcatcatcaagagaagttatacgatttaccttctttcgagccgtagccgaagcgtgaaaaaacttggtattacggtcgccatccttataccaatgggt 15993496  T
Q  117 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcac 205  Q
    ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||||||    
T  15993497 ttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcctcac 15993585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 14502883 - 14502697
Alignment:
Q  17 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 116  Q
    |||||||||||||||| |||||||| |||||||| || | |||  | ||||| || ||||||||||| ||||| |  ||||||||||| ||||| || |     
T  14502883 catcatcatcaagagaagttatacgatttaccttctttcgagccgtagccgaagcgtgaaaaaacttggtattacggtcgccatccttataccaatgggt 14502784  T
Q  117 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctc 203  Q
    ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||||    
T  14502783 ttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcctc 14502697  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 22289538 - 22289352
Alignment:
Q  17 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 116  Q
    |||||||||||||||| |||||||| |||||||| || | |||  | ||||| || ||||||||||| ||||| |  ||||||||||| ||||| || |     
T  22289538 catcatcatcaagagaagttatacgatttaccttctttcgagccgtagccgaagcgtgaaaaaacttggtattacggtcgccatccttataccaatgggt 22289439  T
Q  117 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctc 203  Q
    ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||||    
T  22289438 ttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcctc 22289352  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 28243804 - 28243619
Alignment:
Q  20 catcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagcttt 119  Q
    |||||||||||||||||||| | |||||||| || |||||| | ||||| || ||||||||||| ||||| |  |  |||||||| ||||| |||| |||    
T  28243804 catcatcaagagaggttataagatttaccttctttcaagctgtagccgaagcgtgaaaaaacttggtattacggttaccatccttataccaatgagtttt 28243705  T
Q  120 agcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcac 205  Q
     |||  |||| ||||||| ||||| | ||||||||| ||||||||||    |||||| ||||| ||||||| |  |||||||||||    
T  28243704 tgcatgttgaagccaataagcatcatattgggacagtagccgttgcattcttttccttagctcgaacatgcgaacttggtcctcac 28243619  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 26904656 - 26904527
Alignment:
Q  37 atacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagctttagcacattgatgccaat 136  Q
    ||||| |||||||| |||||||||   || ||| ||||||| || |||||||||| ||| |||||||||||||| ||||  ||||||| |||  ||||||    
T  26904656 atacgatttaccttcttccaagctgaagcagatacatgaaagaattttgtatttcgatcaccatccttgtaccaatgagtcttagcacgttgtcgccaat 26904557  T
Q  137 aggcatcgtcttgggacagcagccgttgca 166  Q
    ||||||| ||||||||||  ||||||||||    
T  26904556 aggcatcatcttgggacaaaagccgttgca 26904527  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 511
Target Start/End: Complemental strand, 18925875 - 18925823
Alignment:
Q  459 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaa 511  Q
    |||||||||||||| | ||||| ||||| ||||||||||||| || |||||||    
T  18925875 aatcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaaaa 18925823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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