View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21074_low_6 (Length: 473)
Name: NF21074_low_6
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21074_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 98 - 354
Target Start/End: Complemental strand, 41965454 - 41965198
Alignment:
| Q |
98 |
tctggcttaagtagaattcgtcgaaaaaatcatgttagtaatggcaaccgtgtttcaccataaatcgcattagacatacatcaatgttgtgatttatttt |
197 |
Q |
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| T |
41965454 |
tctggcttaagtagaattcgtcgaaaaaatcatgttagtaatggcaaccgtgtttcaccataaatcgcattagacatacatcaatgttgtgatttatttt |
41965355 |
T |
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| Q |
198 |
aatttgcttttatccttcaaaatcaaattctctatatagacatagatggaccggaaggtatgaagctcacctttgggataatacttgtagaagggaaggt |
297 |
Q |
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| T |
41965354 |
aatttgcttttatccttcaaaatcaaattctctatatagacatagatggaccggaaggtatgaagctcacctttgggataatacttgtagaagggaaggt |
41965255 |
T |
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| Q |
298 |
caatcaagaaaaggacgtcaaggtaacaacaaattaacttcaaaccacttaatgttt |
354 |
Q |
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| T |
41965254 |
cagtcaagaaaaggacgtcaaggtaacaacaaattaacttcaaaccacttaatgttt |
41965198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 41965614 - 41965545
Alignment:
| Q |
1 |
gaagagctttggatacctttggccaaagaacatcaatatatcgtggtgtaacaaggtttgaaaatatatt |
70 |
Q |
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| T |
41965614 |
gaagagctttggatacctttggccaaagaacatcaatatatcgtggtgtaacaaggtttgaaaatatatt |
41965545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 41965113 - 41965072
Alignment:
| Q |
421 |
actaacacatttccatttttcttcatcttgccctatgcttct |
462 |
Q |
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| T |
41965113 |
actaacacatttccatttttcttcatcttgccctatgcttct |
41965072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 41965551 - 41965522
Alignment:
| Q |
73 |
atatattgtttaaattttttgcatgtctgg |
102 |
Q |
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| T |
41965551 |
atatattgtttaaattttttgcatgtctgg |
41965522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 323
Target Start/End: Complemental strand, 24563213 - 24563122
Alignment:
| Q |
232 |
tatagacatagatggaccggaaggtatgaagctcacctttgggataatacttgtagaagggaaggtcaatcaagaaaaggacgtcaaggtaa |
323 |
Q |
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| T |
24563213 |
tatagacatagatggactggaaggtatgaagctcacctttgggataacagctgtagaagggaaggtcagtcgagaaaaggccgccaaggtaa |
24563122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 30620032 - 30619980
Alignment:
| Q |
238 |
catagatggaccggaaggtatgaagctcacctttgggataatacttgtagaag |
290 |
Q |
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| T |
30620032 |
catagatggacagggagatatgaagctcacctttgggataatagttgtagaag |
30619980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 16869959 - 16869910
Alignment:
| Q |
234 |
tagacatagatggaccggaaggtatgaagctcacctttgggataatactt |
283 |
Q |
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| T |
16869959 |
tagacatagatggaccggaaggtttgaagctcatctatgggataagactt |
16869910 |
T |
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