View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21074_low_9 (Length: 462)

Name: NF21074_low_9
Description: NF21074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21074_low_9
NF21074_low_9
[»] chr2 (15 HSPs)
chr2 (1-445)||(41789953-41790397)
chr2 (261-419)||(25939686-25939846)
chr2 (261-413)||(45553683-45553837)
chr2 (261-415)||(45621307-45621463)
chr2 (261-414)||(26291624-26291779)
chr2 (275-423)||(25348568-25348718)
chr2 (334-423)||(16075820-16075909)
chr2 (344-414)||(21072158-21072228)
chr2 (336-424)||(8502513-8502601)
chr2 (332-422)||(9239812-9239902)
chr2 (261-423)||(27418775-27418939)
chr2 (261-423)||(27419921-27420085)
chr2 (347-425)||(26652667-26652744)
chr2 (370-424)||(24533989-24534043)
chr2 (258-319)||(30694924-30694986)
[»] chr4 (13 HSPs)
chr4 (252-425)||(18448344-18448517)
chr4 (262-422)||(1832955-1833117)
chr4 (262-418)||(26115292-26115450)
chr4 (332-423)||(22526897-22526988)
chr4 (290-422)||(13587782-13587914)
chr4 (263-414)||(12839182-12839335)
chr4 (288-418)||(5529018-5529150)
chr4 (332-413)||(25024050-25024131)
chr4 (337-423)||(11520514-11520600)
chr4 (265-413)||(9264404-9264553)
chr4 (355-424)||(10782552-10782620)
chr4 (348-422)||(19901253-19901327)
chr4 (395-445)||(23972082-23972139)
[»] scaffold0672 (1 HSPs)
scaffold0672 (264-419)||(4428-4585)
[»] chr6 (8 HSPs)
chr6 (261-419)||(2587259-2587419)
chr6 (267-423)||(14725971-14726129)
chr6 (261-419)||(24216086-24216246)
chr6 (332-414)||(9291466-9291548)
chr6 (261-414)||(9726560-9726713)
chr6 (355-423)||(22565548-22565615)
chr6 (276-313)||(22849986-22850023)
chr6 (258-318)||(23087787-23087847)
[»] chr1 (9 HSPs)
chr1 (261-413)||(34481495-34481649)
chr1 (261-413)||(16787137-16787290)
chr1 (261-423)||(17442777-17442941)
chr1 (258-386)||(14240197-14240328)
chr1 (355-423)||(17837888-17837956)
chr1 (332-423)||(16113528-16113619)
chr1 (260-313)||(26810422-26810475)
chr1 (355-424)||(26810519-26810588)
chr1 (276-311)||(16360444-16360479)
[»] chr7 (20 HSPs)
chr7 (261-418)||(22338794-22338953)
chr7 (272-413)||(11218679-11218822)
chr7 (261-423)||(5530629-5530793)
chr7 (332-423)||(5222063-5222154)
chr7 (252-422)||(10938158-10938330)
chr7 (267-412)||(9500866-9501012)
chr7 (258-393)||(21884558-21884695)
chr7 (261-413)||(31493472-31493626)
chr7 (332-418)||(21233093-21233179)
chr7 (290-422)||(9721515-9721647)
chr7 (261-423)||(15612059-15612223)
chr7 (261-419)||(13708031-13708192)
chr7 (261-418)||(18662989-18663146)
chr7 (251-393)||(21911879-21912027)
chr7 (347-423)||(140758-140832)
chr7 (350-423)||(10649924-10649996)
chr7 (347-423)||(1882900-1882975)
chr7 (261-319)||(9917069-9917127)
chr7 (261-319)||(9924981-9925039)
chr7 (355-423)||(1873487-1873554)
[»] chr5 (18 HSPs)
chr5 (262-422)||(23265682-23265844)
chr5 (261-414)||(19762660-19762815)
chr5 (261-422)||(26252367-26252529)
chr5 (271-418)||(24164428-24164577)
chr5 (261-418)||(17470657-17470816)
chr5 (261-418)||(17170938-17171097)
chr5 (332-414)||(18416795-18416877)
chr5 (286-423)||(26066707-26066846)
chr5 (265-413)||(9521349-9521499)
chr5 (332-423)||(17635912-17636003)
chr5 (332-423)||(26314304-26314395)
chr5 (261-366)||(25579308-25579415)
chr5 (332-417)||(32448627-32448712)
chr5 (258-423)||(15544629-15544790)
chr5 (261-319)||(27920917-27920976)
chr5 (348-402)||(26308274-26308328)
chr5 (258-318)||(112075-112136)
chr5 (258-313)||(17830685-17830741)
[»] chr3 (10 HSPs)
chr3 (261-404)||(820920-821065)
chr3 (261-424)||(314615-314780)
chr3 (270-419)||(22245860-22246011)
chr3 (332-423)||(6290444-6290535)
chr3 (332-414)||(13907658-13907740)
chr3 (261-422)||(27853917-27854079)
chr3 (347-423)||(21018487-21018561)
chr3 (345-385)||(21019326-21019366)
chr3 (261-312)||(20885738-20885789)
chr3 (355-418)||(20885818-20885880)
[»] chr8 (7 HSPs)
chr8 (260-424)||(5052307-5052473)
chr8 (261-392)||(17977161-17977294)
chr8 (261-414)||(24905182-24905337)
chr8 (346-423)||(30486848-30486925)
chr8 (261-424)||(5855645-5855810)
chr8 (336-392)||(24381227-24381283)
chr8 (261-310)||(15064859-15064908)
[»] scaffold0019 (2 HSPs)
scaffold0019 (332-420)||(183869-183957)
scaffold0019 (380-425)||(27166-27211)
[»] scaffold0128 (1 HSPs)
scaffold0128 (261-319)||(80-138)
[»] scaffold0136 (1 HSPs)
scaffold0136 (353-424)||(14872-14944)


Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 41790397 - 41789953
Alignment:
Q  1 tattccaacaaaatatactatattgtaatcaagtgactaactaaaatgcaaaacgatgtcttcaaaaaagagattttctaacatgaatcattctttattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  41790397 tattccaacaaaatatactatattgtaatcaagtgactaactaaaatgcaaaacgatgtcttcaaaaaatagattttctaacactaatcattctttattt 41790298  T
Q  101 tttcggtgactcaatctatttcaacttattgtacgcgtattttcttattacagtctatgttgatcggagagttggaaagagtgatcaattttttgatgga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  41790297 tttcggtgactcaatctatttcaacttattgtacgcgtattttcttattacactctatgttgatcggagagttggaaagaatgatcaattttttgatgga 41790198  T
Q  201 gatcaaaatgaggatcggggagaggcattagttgcttaaatttagagttatctcgcgtattgaatcttagaagtacatagcacattctccctctcggtag 300  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41790197 gatcgaactgaggatcggggagaggcattagttgcttaaatttagagttatctcgtgtattgaatcttagaagtacatagcacattctccctctcggtag 41790098  T
Q  301 ttccacaaacgggtagccccagacgtatactttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaatt 400  Q
    ||| |||||||||||| | |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41790097 ttctacaaacgggtagtctcagacgtatattttaccaaggtgcgaggagaatgaagttactgagctgagttaagtcatgaagtcacatgtttcattaatt 41789998  T
Q  401 actaactagttacttcctgattttgtgcaccaatattaggtatgt 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41789997 actaactagttacttcctgattttgtgcaccaatattaggtatgt 41789953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 261 - 419
Target Start/End: Original strand, 25939686 - 25939846
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    ||||||||| ||| |||||| ||| |||||||||||||||||| ||||||||| || ||   ||| ||| ||| |||||||||||  ||||||||| | |    
T  25939686 tgaatcttaaaagaacatagaacactctccctctcggtagttctacaaacggggagacctatcag-cgtctaccttaccaaggtgaaaggagaatggaat 25939784  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctg 419  Q
    |||||| || | |||||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  25939785 tactggacttatttaagtcatgaagtcacatgtttccttaattactaactaattactacctg 25939846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 261 - 413
Target Start/End: Original strand, 45553683 - 45553837
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||| ||| |||| |||| ||| ||||| |||||||| ||||| ||| |||||   ||| ||  ||| ||||||||||| |||||||||| |||    
T  45553683 tgaatcttaggagtgcataacacactcttcctcttggtagttctacaaatgggcagccctatcag-cgactaccttaccaaggtgtgaggagaatggagt 45553781  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttac 413  Q
    ||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  45553782 tactgtgctgatttaagtcatgaagtcacttgtttccttaattactaactagttac 45553837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 261 - 415
Target Start/End: Complemental strand, 45621463 - 45621307
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccag--acgtatactttaccaaggtgcgaggagaatgaagtt 358  Q
    |||| ||||||||||||||  ||| ||| ||||| |||||||| ||||||||  | ||| |   |||| ||| |||||||||||||||||||||||||||    
T  45621463 tgaaccttagaagtacataagacaatcttcctcttggtagttctacaaacggacaaccctatcaacgtctaccttaccaaggtgcgaggagaatgaagtt 45621364  T
Q  359 actgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttactt 415  Q
    | | |||||| ||||||| |||||| || |||||| |||||||||||||||||||||    
T  45621363 agtaggctgatttaagtcgtgaagtaacttgtttccttaattactaactagttactt 45621307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 414
Target Start/End: Original strand, 26291624 - 26291779
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagcccca-ga-cgtatactttaccaaggtgcgaggagaatgaagtt 358  Q
    ||||||||||||||||||| |||| ||||| |||||||||||  |||||| |  ||||| | || ||| ||| ||||||| ||| |||||||||| ||||    
T  26291624 tgaatcttagaagtacataacacactctccttctcggtagttttacaaactgacagccctatgagcgtctaccttaccaaagtgtgaggagaatggagtt 26291723  T
Q  359 actgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttact 414  Q
    | |||||||| ||||||| ||||||||| |||||| |||||||||||||| |||||    
T  26291724 attgggctgatttaagtcgtgaagtcacttgtttccttaattactaactaattact 26291779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 275 - 423
Target Start/End: Original strand, 25348568 - 25348718
Alignment:
Q  275 acatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagttactgggctgagtt 371  Q
    ||||| |||| |||||||||| ||||||| ||||||| | |||||   ||| ||| ||| ||||| |||| |||||||||||||||||||||||||| ||    
T  25348568 acataacacactctccctctcagtagttctacaaacgagcagccctatcag-cgtctaccttaccgaggttcgaggagaatgaagttactgggctgattt 25348666  T
Q  372 aagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    ||||| ||||||||| ||| |    |||||||||||||||||||||||||||    
T  25348667 aagtcgtgaagtcacctgtctttcaaattactaactagttacttcctgattt 25348718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 423
Target Start/End: Complemental strand, 16075909 - 16075820
Alignment:
Q  334 accaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    |||||||||||||||||||  ||||||||||||   ||||||| |||||| || |||||| ||||||||||||||||||| |||||||||    
T  16075909 accaaggtgcgaggagaattgagttactgggctattttaagtcgtgaagttacttgtttccttaattactaactagttacatcctgattt 16075820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 414
Target Start/End: Complemental strand, 21072228 - 21072158
Alignment:
Q  344 gaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttact 414  Q
    |||||||||| ||||||| |||||| ||||||||||||||||| |||||| | ||||||||||||||||||    
T  21072228 gaggagaatggagttactaggctgatttaagtcatgaagtcacttgtttcctcaattactaactagttact 21072158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 424
Target Start/End: Complemental strand, 8502601 - 8502513
Alignment:
Q  336 caaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatttt 424  Q
    ||||||| | |||||||||||||| |||  ||| ||||||| |||||||||||||||  || ||||||||||||||||||| |||||||    
T  8502601 caaggtgtgcggagaatgaagttaatggattgatttaagtcgtgaagtcacatgttttcttgattactaactagttacttcatgatttt 8502513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 422
Target Start/End: Original strand, 9239812 - 9239902
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatt 422  Q
    |||||||| | |||||| |||||||||| | || ||  ||||||| ||||||||||| ||||  |||||||||||||||||||||||||||    
T  9239812 ttaccaagattcgaggaaaatgaagttattaggttggtttaagtcgtgaagtcacatatttctgtaattactaactagttacttcctgatt 9239902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 423
Target Start/End: Original strand, 27418775 - 27418939
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccagacg--tatactttaccaaggtgcgaggagaatgaagtt 358  Q
    |||||||||||| |||||| |||||||| |||||| ||||||  |||||||| || ||| |  ||  | ||| |||||| ||||  || | |||| ||||    
T  27418775 tgaatcttagaaatacataacacattcttcctctcagtagttgtacaaacggttatccctatccgcgtctaccttaccagggtgaaagaataatggagtt 27418874  T
Q  359 actgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
      |||||| | ||||||| | ||||||| |||||| |||||||||||||||||| | ||||||||    
T  27418875 tttgggctcatttaagtcgtaaagtcacctgtttccttaattactaactagttattacctgattt 27418939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 423
Target Start/End: Original strand, 27419921 - 27420085
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccagacg--tatactttaccaaggtgcgaggagaatgaagtt 358  Q
    |||||||||||| |||||| |||||||| |||||| ||||||  |||||||| || ||| |  ||  | ||| |||||| ||||  || | |||| ||||    
T  27419921 tgaatcttagaaatacataacacattcttcctctcagtagttgtacaaacggttatccctattcgcgtctaccttaccagggtgaaagaataatggagtt 27420020  T
Q  359 actgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
      |||||| | ||||||| | ||||||| |||||| |||||||||||||||||| | ||||||||    
T  27420021 tttgggctcatttaagtcgtaaagtcacctgtttccttaattactaactagttattacctgattt 27420085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 26652744 - 26652667
Alignment:
Q  347 gagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattttg 425  Q
    ||||||||||||||| || ||| |||||||||||||||||| ||||| |||||||||| ||| | ||| ||| ||||||    
T  26652744 gagaatgaagttactaggttgatttaagtcatgaagtcaca-gtttccttaattactagctaatcactacctaattttg 26652667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 424
Target Start/End: Original strand, 24533989 - 24534043
Alignment:
Q  370 ttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatttt 424  Q
    ||||||| ||||||||  | |||| |||||||||||||||||||||| |||||||    
T  24533989 ttaagtcgtgaagtcatttttttccttaattactaactagttacttcgtgatttt 24534043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 30694986 - 30694924
Alignment:
Q  258 tattgaatcttagaagtacat-agcacattctccctctcggtagttccacaaacgggtagccc 319  Q
    |||||||||||||||| |||| | || |||||||||||||||||||  ||||||||| |||||    
T  30694986 tattgaatcttagaaggacatcaacatattctccctctcggtagttatacaaacgggaagccc 30694924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 252 - 425
Target Start/End: Complemental strand, 18448517 - 18448344
Alignment:
Q  252 ctcgcgtattgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccagacgtatactttaccaaggtgcgaggagaa 351  Q
    ||||| ||||||||||||||||| ||||||||| || |||||||| |||||| ||||||||| ||||||| |||| ||| || ||||||||| |||||||    
T  18448517 ctcgcctattgaatcttagaagtgcatagcacactccccctctcgatagttctacaaacgggaagccccaaacgtctacctttccaaggtgcaaggagaa 18448418  T
Q  352 tgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattttg 425  Q
    ||||||||| ||||| | ||||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  18448417 tgaagttaccgggctaatttaagtcgtgaagtcacatgtttccttagttactaactagttacttgctgattttg 18448344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 262 - 422
Target Start/End: Complemental strand, 1833117 - 1832955
Alignment:
Q  262 gaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagtt 358  Q
    ||||||| ||||||||||||||| ||||||||||| |||||  ||||||||| |||||   ||| ||| ||| ||| |||||||||||||||||||| ||    
T  1833117 gaatctttgaagtacatagcacactctccctctcgctagttttacaaacgggcagccctatcag-cgtctaccttaacaaggtgcgaggagaatgaactt 1833019  T
Q  359 actgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatt 422  Q
    ||  |||||| |||| ||||||| ||||  ||||| |||||||||||||||||| ||| |||||    
T  1833018 acatggctgatttaactcatgaattcaccagtttctttaattactaactagttaattcatgatt 1832955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 262 - 418
Target Start/End: Complemental strand, 26115450 - 26115292
Alignment:
Q  262 gaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccag--acgtatactttaccaaggtgcgaggagaa-tgaagtt 358  Q
    ||||||||| |||||||| |||| ||||| |||||||||||| | ||||| | || || |   | || ||| ||||| ||||||||||| || || ||||    
T  26115450 gaatcttaggagtacataacacactctccgtctcggtagttctataaacgagaagtcctatcaaagtctaccttaccgaggtgcgaggaaaaatggagtt 26115351  T
Q  359 actgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcct 418  Q
    |||||||||| ||||||||||||||||| |||||| | ||||||||||||||||| ||||    
T  26115350 actgggctga-ttaagtcatgaagtcacttgtttcctaaattactaactagttacatcct 26115292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 423
Target Start/End: Original strand, 22526897 - 22526988
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    |||||||||| ||||||||| |||||||| ||||||| ||||||| |||| |||||||||||  |||||||||  ||||||||| |||||||    
T  22526897 ttaccaaggttcgaggagaaggaagttacggggctgatttaagtcgtgaaatcacatgtttccctaattactacatagttactttctgattt 22526988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 422
Target Start/End: Original strand, 13587782 - 13587914
Alignment:
Q  290 cctctcggtagttccacaaacgggtagccccagacgtatactttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatg 389  Q
    ||||||| |||||  | |||||||||||||||||||| |||  ||||||  || ||| | |||||||||| | |||||| ||||||| |||||||   ||    
T  13587782 cctctcgctagttttataaacgggtagccccagacgtctaccctaccaatctgtgagcataatgaagttattaggctgatttaagtcgtgaagtcgtctg 13587881  T
Q  390 tttcattaattactaactagttacttcctgatt 422  Q
    |||  |||||||||||||||||||||| |||||    
T  13587882 ttttcttaattactaactagttacttcttgatt 13587914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 414
Target Start/End: Complemental strand, 12839335 - 12839182
Alignment:
Q  263 aatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccaga--cgtatactttaccaaggtgcgaggagaatgaagttac 360  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||||| | ||| | |  ||| ||| ||||||| |||  || | |||| ||||||    
T  12839335 aatcttagaagtacataacacactctccctctcggtagttctacaaacgggcatccctataagcgtctaccttaccaatgtgaaagaataatggagttac 12839236  T
Q  361 tgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttact 414  Q
    | ||   | ||||  ||| ||||||| |||||| ||||||||||||||||||||    
T  12839235 taggaaaatttaaaacataaagtcacctgtttccttaattactaactagttact 12839182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 418
Target Start/End: Original strand, 5529018 - 5529150
Alignment:
Q  288 tccctctcggtagttccacaaacgggtagccccaga--cgtatactttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtca 385  Q
    ||||||||| |||||| ||||||||||||||| |    ||| ||| |||||||||||  || |||||| | |||||||  ||| |||||||||||||||     
T  5529018 tccctctcgctagttcaacaaacgggtagccctattagcgtttaccttaccaaggtgaaagaagaatggaattactggattgatttaagtcatgaagtcg 5529117  T
Q  386 catgtttcattaattactaactagttacttcct 418  Q
    | |||||  |||||| |||||||||||||||||    
T  5529118 cctgtttacttaattgctaactagttacttcct 5529150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 25024050 - 25024131
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttac 413  Q
    |||||||||  ||||||||||| | |||||||| ||| |||||||||| |||||| |||||| ||||||| |||||||||||    
T  25024050 ttaccaagggtcgaggagaatggatttactgggatgatttaagtcatgcagtcacttgtttccttaattaataactagttac 25024131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 423
Target Start/End: Complemental strand, 11520600 - 11520514
Alignment:
Q  337 aaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    ||||||| || |||||| |||||||||||||| | ||||| | ||||||  |||||| |||||||||||||| ||||| ||| ||||    
T  11520600 aaggtgcaagaagaatggagttactgggctgattgaagtcgttaagtcaattgtttccttaattactaactacttactacctaattt 11520514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 413
Target Start/End: Complemental strand, 9264553 - 9264404
Alignment:
Q  265 tcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagttact 361  Q
    |||||||||||||||||||||| ||||||| |||||||| | ||||||| | |||   ||| | | ||| | ||| |||| ||||||||||| |||||      
T  9264553 tcttagaagtacatagcacattttccctcttggtagttctataaacgggcaaccctatcag-catttacctgacccaggt-cgaggagaatggagttatc 9264456  T
Q  362 gggctgagttaagtcatgaagtcacatgtttcattaattactaactagttac 413  Q
     |||||| ||| ||  ||||||||  |||||| |||||||||||||||||||    
T  9264455 aggctgatttaggttgtgaagtcatttgtttccttaattactaactagttac 9264404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 10782552 - 10782620
Alignment:
Q  355 agttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatttt 424  Q
    |||||||| ||||| ||||||||||||||||| |||||  ||||||||||| ||||| ||||| ||||||    
T  10782552 agttactgagctgatttaagtcatgaagtcacctgttttcttaattactaa-tagttgcttccagatttt 10782620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 19901253 - 19901327
Alignment:
Q  348 agaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattact-aactagttacttcctgatt 422  Q
    ||||||||||||||||  ||| |||||||||||||||||||||||   ||||| || |||||||||| ||||||||    
T  19901253 agaatgaagttactggt-tgatttaagtcatgaagtcacatgtttacctaattgctaaactagttacatcctgatt 19901327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 445
Target Start/End: Original strand, 23972082 - 23972139
Alignment:
Q  395 ttaattactaactagttacttcctgattttg-------tgcaccaatattaggtatgt 445  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  23972082 ttaattactaactagttacttcctgattttggcaggtatgcaccaatattaggtatgt 23972139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 264 - 419
Target Start/End: Original strand, 4428 - 4585
Alignment:
Q  264 atcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccagacgtat--actttaccaaggtgcgaggagaatgaagttact 361  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||||| |   | ||  || ||| |||||||||||||||||||||||| |    
T  4428 atcttagaagtacatagcacactctccctctcggtagttctacacacgggcagccctattagcatctaccttatcaaggtgcgaggagaatgaagttatt 4527  T
Q  362 gggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctg 419  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||    
T  4528 gggctgatttaagtcatgaagtcacttgtttccttaattactaactagttactacctg 4585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 261 - 419
Target Start/End: Original strand, 2587259 - 2587419
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||| ||||||||||||| |||||||||| |||||||  ||||| |  | |||   ||| ||| ||| ||||||||||||||||||||||| ||    
T  2587259 tgaatcttaggagtacatagcacactctccctctcagtagttctccaaacagacaaccctatcag-cgtctaccttaccaaggtgcgaggagaatgacgt 2587357  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctg 419  Q
    |||| |||||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||    
T  2587358 tactaggctgatttaagtcatgaagtcacttgtttccttaattactaactagttacatcctg 2587419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 267 - 423
Target Start/End: Original strand, 14725971 - 14726129
Alignment:
Q  267 ttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccag--acgtatactttaccaaggtgcgaggagaatgaagttactggg 364  Q
    ||||||||||||| |||||||| |||||||||| ||| ||||||| | ||||  |   || | ||| |||||||||| ||||||||||| ||||| ||||    
T  14725971 ttagaagtacataacacattcttcctctcggtaattctacaaacgagcagccttatcaacatttaccttaccaaggttcgaggagaatggagttaatggg 14726070  T
Q  365 ctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
     ||| |||  || ||||||||| |||||| |||||||||||||| ||||| ||||||||    
T  14726071 atgatttatttcgtgaagtcacttgtttccttaattactaactacttactacctgattt 14726129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 419
Target Start/End: Original strand, 24216086 - 24216246
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    ||||||||||||||||| | |||  |||||||||||||||||| |||||   | |||||   || |||| |||  ||||||||||| ||| ||||| |||    
T  24216086 tgaatcttagaagtacacatcactctctccctctcggtagttctacaaataagaagccctgtca-acgtctaccataccaaggtgcaaggtgaatggagt 24216184  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctg 419  Q
    |||| ||| || ||||||| ||| ||||| |||||| ||||||||||||||||||| |||||    
T  24216185 tactaggcggatttaagtcgtgatgtcacttgtttccttaattactaactagttacctcctg 24216246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 9291548 - 9291466
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttact 414  Q
    |||| |||||| ||||| |||| ||||| |||||||| ||||||||||||||||| |||||| |||||||| |||||||||||    
T  9291548 ttactaaggtgtgaggaaaatggagttattgggctgatttaagtcatgaagtcacttgtttccttaattaccaactagttact 9291466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 414
Target Start/End: Original strand, 9726560 - 9726713
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||||| |||||| |||| ||||  ||||| |||||| ||||||||| |||||   ||| ||| ||| |||   |||||  || |||||| |||    
T  9726560 tgaatcttagaaatacataacacactctcgttctcgatagttctacaaacgggcagccctatcag-cgtctaccttat--aggtgaaagaagaatggagt 9726656  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttact 414  Q
    |  ||| |||||||||||| |||||||||||||||| |||||||||| |||||||||    
T  9726657 tcgtggtctgagttaagtcgtgaagtcacatgtttccttaattactagctagttact 9726713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 22565615 - 22565548
Alignment:
Q  355 agttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    |||||||||||||| ||||||| || ||||| | ||||| |||||||||||||| ||||||||| ||||    
T  22565615 agttactgggctgatttaagtcgtggagtcata-gtttccttaattactaactacttacttcctcattt 22565548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 22850023 - 22849986
Alignment:
Q  276 catagcacattctccctctcggtagttccacaaacggg 313  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  22850023 catagcacactctccctctcggtagttctacaaacggg 22849986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 23087847 - 23087787
Alignment:
Q  258 tattgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagcc 318  Q
    ||||||||||||||||  |||| |||| |||||||||||||| ||  | ||||||||||||    
T  23087847 tattgaatcttagaagcgcataacacactctccctctcggtatttttataaacgggtagcc 23087787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 261 - 413
Target Start/End: Original strand, 34481495 - 34481649
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccag--acgtatactttaccaaggtgcgaggagaatgaagtt 358  Q
    |||||||||| ||||||||||||||  |||||||||||||||| |||||| |||||||| |   |||  ||| |||| || |||||||||||||| ||||    
T  34481495 tgaatcttaggagtacatagcacatcatccctctcggtagttctacaaacaggtagccctatcaacgcctaccttacgaatgtgcgaggagaatgcagtt 34481594  T
Q  359 actgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttac 413  Q
    | |||| ||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  34481595 attgggttgatttaagtcatgaagtcacttgtttccttaattactaactagttac 34481649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 261 - 413
Target Start/End: Complemental strand, 16787290 - 16787137
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||| ||||||||||||||||||| |||||||||||  ||||||||| |||||   ||| ||| ||| ||||||||||   ||| |||||||||    
T  16787290 tgaatcttaggagtacatagcacattctcc-tctcggtagttatacaaacgggcagccctatcag-cgtctaccttaccaaggttataggtgaatgaagt 16787193  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttac 413  Q
    || | |||||| ||||||||||||||||| |||||| ||||||| |||||||||||    
T  16787192 tattaggctgatttaagtcatgaagtcacttgtttccttaattaataactagttac 16787137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 261 - 423
Target Start/End: Original strand, 17442777 - 17442941
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||||||||| | |||   ||| ||| ||| ||||||||||   || | ||  ||||    
T  17442777 tgaatcttagaagtacatagcacactcgccctctcggtagttctacaaacgggaaaccctatcag-cgtctaccttaccaaggtaaaagaaaaacaaagt 17442875  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    ||||||||| | ||||||| ||||||||| |||||  ||||||||||||||||||||  |||||||    
T  17442876 tactgggcttatttaagtcctgaagtcacctgttttcttaattactaactagttactatctgattt 17442941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 386
Target Start/End: Complemental strand, 14240328 - 14240197
Alignment:
Q  258 tattgaatcttagaagtacat-agcacattctccctctcggtagttccacaaacgggtagcccca--gacgtatactttaccaaggtgcgaggagaatga 354  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||||  |||||  || ||||| |   |||| ||| |||||||||||| || |||||||    
T  14240328 tattgaatcttagaaggacatcagcacattctccctcacggtagttatacaaaaaggcagccctattaacgtctaccttaccaaggtgcaagaagaatga 14240229  T
Q  355 agttactgggctgagttaagtcatgaagtcac 386  Q
    ||| | || ||||| ||||||||| |||||||    
T  14240228 agtaattgtgctgatttaagtcatcaagtcac 14240197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 17837888 - 17837956
Alignment:
Q  355 agttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    |||||||||| ||| ||||||| ||||||||| |||||| |||||||||||||||||||| ||| ||||    
T  17837888 agttactgggatgatttaagtcgtgaagtcacttgtttccttaattactaactagttactacctaattt 17837956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 423
Target Start/End: Original strand, 16113528 - 16113619
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    ||||||||||| ||| | |||| | ||| |||| ||  ||||||| | ||||||| |||||| ||||||||||||||||||| |||||||||    
T  16113528 ttaccaaggtgtgagaaaaatggatttattgggttgctttaagtcgtaaagtcacttgtttccttaattactaactagttacatcctgattt 16113619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 26810422 - 26810475
Alignment:
Q  260 ttgaatcttagaagtacatagcacattctccctctcggtagttccacaaacggg 313  Q
    |||||| ||| ||| |||||||||||| |||||||||||||||| |||||||||    
T  26810422 ttgaatgttataaggacatagcacattatccctctcggtagttctacaaacggg 26810475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 424
Target Start/End: Original strand, 26810519 - 26810588
Alignment:
Q  355 agttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatttt 424  Q
    ||||||| || ||| ||||||||||||| |||||||||  |||||||||| ||| ||||||||| |||||    
T  26810519 agttactaggttgatttaagtcatgaaggcacatgttttcttaattactacctaattacttcctaatttt 26810588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 311
Target Start/End: Original strand, 16360444 - 16360479
Alignment:
Q  276 catagcacattctccctctcggtagttccacaaacg 311  Q
    |||||||||||||||||||||||||||| |||||||    
T  16360444 catagcacattctccctctcggtagttctacaaacg 16360479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 261 - 418
Target Start/End: Complemental strand, 22338953 - 22338794
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccaga--cgtatactttaccaaggtgcgaggagaatgaagtt 358  Q
    |||||||||  ||||||||||||| ||| |||||||||||||| |||||| |||||||| |    ||||||| |||||||||||||||||||||| ||||    
T  22338953 tgaatcttatgagtacatagcacactcttcctctcggtagttctacaaacaggtagccctattagcgtataccttaccaaggtgcgaggagaatggagtt 22338854  T
Q  359 actgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcct 418  Q
    ||| || |||  ||| |||||||||||| |||||||||||||||||  ||||||| ||||    
T  22338853 actaggatgatataaatcatgaagtcacttgtttcattaattactatttagttacatcct 22338794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 413
Target Start/End: Complemental strand, 11218822 - 11218679
Alignment:
Q  272 agtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagttactgggctga 368  Q
    |||||||| |||| ||||| | || ||||||| ||||||||| |||||   ||| ||||||| |||||||||||||||||||||| ||| ||||||||||    
T  11218822 agtacataacacactctccttatcagtagttctacaaacgggaagccctatcag-cgtataccttaccaaggtgcgaggagaatggagtaactgggctga 11218724  T
Q  369 gttaagtcatgaagtcacatgtttcattaattactaactagttac 413  Q
     ||||||||||||||| | |||||| |||||||||||||||||||    
T  11218723 tttaagtcatgaagtcgcttgtttccttaattactaactagttac 11218679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 261 - 423
Target Start/End: Original strand, 5530629 - 5530793
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagcccca--gacgtatactttaccaaggtgcgaggagaatgaagtt 358  Q
    ||||||||| | ||||||| |||| |||||||||||||||||| ||||| ||| | ||| |  | | | ||| ||||||||||||| |||||||| ||||    
T  5530629 tgaatcttatatgtacataacacactctccctctcggtagttctacaaatgggcacccctatcggcatctaccttaccaaggtgcgtggagaatggagtt 5530728  T
Q  359 actgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    | |||||||| ||||||| ||||| ||| |||||| |||||||||||||||||||| ||||||||    
T  5530729 attgggctgatttaagtcgtgaagccacttgtttccttaattactaactagttactgcctgattt 5530793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 332 - 423
Target Start/End: Complemental strand, 5222154 - 5222063
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||| |||||||||||||||||||  ||||||||    
T  5222154 ttaccaaggtgcgaggagaatgaagttacttggctgatttaagacatgaagtcacttgtttccttaattactaactagttacaacctgattt 5222063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 252 - 422
Target Start/End: Original strand, 10938158 - 10938330
Alignment:
Q  252 ctcgcgtattgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccaga--cgtatactttaccaaggtgcgaggag 349  Q
    ||||| |||||||||||||||||||||| |||| ||||||| || | ||||| ||||||||||| ||| | |  ||| ||| ||||||||||| ||| |     
T  10938158 ctcgcctattgaatcttagaagtacataacacactctccctttctggagttctacaaacgggtaaccctataatcgtctaccttaccaaggtgtgagaaa 10938257  T
Q  350 aatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatt 422  Q
    |||||  ||| || | |||  ||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  10938258 aatgatattattgtgatgatataaatcatgaagtcacttgtttccttaattactaactagttacttcctgatt 10938330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 267 - 412
Target Start/End: Original strand, 9500866 - 9501012
Alignment:
Q  267 ttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc--cagacgtatactttaccaaggtgcgaggagaatgaagttactggg 364  Q
    ||||||||||||| || | |||||||||||||||||| ||||||||  | ||   || |||| ||| |||||||||||||||||||||| ||||| ||||    
T  9500866 ttagaagtacataacaaactctccctctcggtagttctacaaacggccaccctatca-acgtctaccttaccaaggtgcgaggagaatggagttattggg 9500964  T
Q  365 ctgagttaagtcatgaagtcacatgtttcattaattactaactagtta 412  Q
     ||  ||||||| ||||||||| |||||||||||||||||||||||||    
T  9500965 atggtttaagtcgtgaagtcacttgtttcattaattactaactagtta 9501012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 258 - 393
Target Start/End: Complemental strand, 21884695 - 21884558
Alignment:
Q  258 tattgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccaga--cgtatactttaccaaggtgcgaggagaatgaa 355  Q
    |||||||||||||||| |||||  ||| |||||||||| ||||||| ||||||| ||| ||| | |  ||| ||| ||||||| || |||||||||||||    
T  21884695 tattgaatcttagaagaacatatgacactctccctctcagtagttctacaaacgtgtaaccctataagcgtctaccttaccaaagttcgaggagaatgaa 21884596  T
Q  356 gttactgggctgagttaagtcatgaagtcacatgtttc 393  Q
    ||||||||||||| ||||||| ||||||||| ||||||    
T  21884595 gttactgggctgaattaagtcgtgaagtcacttgtttc 21884558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 413
Target Start/End: Original strand, 31493472 - 31493626
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccag--acgtatactttaccaaggtgcgaggagaatgaagtt 358  Q
    |||||||||| |||||||| |||| |||||||||  ||||||| |||||| || ||||| |   |||| ||| ||||||||||  |||||||||| ||||    
T  31493472 tgaatcttaggagtacataacacactctccctcttagtagttctacaaacaggcagccctatcaacgtctaccttaccaaggtttgaggagaatggagtt 31493571  T
Q  359 actgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttac 413  Q
     ||| || || ||||||| |||| |||| |||||| ||||||| |||||||||||    
T  31493572 gctgagccgatttaagtcttgaaatcacttgtttccttaattaataactagttac 31493626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 418
Target Start/End: Original strand, 21233093 - 21233179
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcct 418  Q
    ||||||| || ||||||||||| | |||||||| ||| ||||||| ||||||||| |||||| ||||||||||||||||||| ||||    
T  21233093 ttaccaaagtacgaggagaatggaattactgggttgatttaagtcgtgaagtcacttgtttcgttaattactaactagttacatcct 21233179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 422
Target Start/End: Original strand, 9721515 - 9721647
Alignment:
Q  290 cctctcggtagttccacaaacgggtagccccagacgtatactttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatg 389  Q
    ||||||| |||||  | |||||||||||||||||||| |||  ||||||  || ||| | |||||||||| | |||||| ||||||| |||||||   ||    
T  9721515 cctctcgctagttttataaacgggtagccccagacgtctaccctaccaatctgtgagcataatgaagttattaggctgatttaagtcgtgaagtcgtctg 9721614  T
Q  390 tttcattaattactaactagttacttcctgatt 422  Q
    |||  |||||||||||||||||||||| |||||    
T  9721615 ttttcttaattactaactagttacttcttgatt 9721647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 261 - 423
Target Start/End: Complemental strand, 15612223 - 15612059
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||| | ||||||||| | | ||| ||||| |||||| |||||||||||||||   ||| ||| |||||||||||||||  || | |||| |||    
T  15612223 tgaatcttagcaatacatagcatactatccttctcgatagttctacaaacgggtagccctatcag-cgtctactttaccaaggtgaaagaaaaatggagt 15612125  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    ||| | | ||| ||||||  | |||||||||||||| ||||||||||||| |||||| | ||||||    
T  15612124 taccgagttgatttaagttgtaaagtcacatgtttccttaattactaacttgttactacttgattt 15612059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 419
Target Start/End: Original strand, 13708031 - 13708192
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaac-gggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaag 356  Q
    ||||||||||||| |||||||||| ||||||||| |||||||  |||||| ||||| |||   |||  || ||| |||||||||||  |  ||| || ||    
T  13708031 tgaatcttagaagcacatagcacactctccctcttggtagttatacaaacggggtaaccctatcag-tgtctaccttaccaaggtgaaacaagagtggag 13708129  T
Q  357 ttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctg 419  Q
    |||||| ||| | ||||||| ||||||||| | |||| | |||||||||||||||||||||||    
T  13708130 ttactgagcttatttaagtcgtgaagtcacttatttcctcaattactaactagttacttcctg 13708192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 418
Target Start/End: Original strand, 18662989 - 18663146
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||| ||||  || |||| ||||||| |||||||||| ||||||||  | |||   ||| ||| ||| ||||||||||  ||||| |||||||     
T  18662989 tgaatcttaggagta--taacacactctccctttcggtagttctacaaacggacaaccctatcag-cgtctaccttaccaaggtttgaggataatgaaga 18663085  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcct 418  Q
    | ||||| ||| |||||||||||||||||||| ||  ||||||| ||||||||||| ||||    
T  18663086 tgctgggttgatttaagtcatgaagtcacatgctttcttaattaataactagttacatcct 18663146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 393
Target Start/End: Complemental strand, 21912027 - 21911879
Alignment:
Q  251 tctcgcgtattgaatcttagaagtacatagcaca----ttctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgc 343  Q
    |||||| |||||||||||||||| ||||||||||     |||| ||||||| ||||  ||||||||| |||||   ||| ||| ||| | |||||||| |    
T  21912027 tctcgcatattgaatcttagaagaacatagcacactctctctctctctcgggagttttacaaacgggcagccctaacag-cgtctacctaaccaaggttc 21911929  T
Q  344 gaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttc 393  Q
     | |||||||||||||||||| ||| ||||||| | ||||||| ||||||    
T  21911928 aacgagaatgaagttactgggatgatttaagtcgtaaagtcacttgtttc 21911879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 140758 - 140832
Alignment:
Q  347 gagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    ||||||| |||||||||| ||| ||||||| |||||||   |||||| ||||||||||||||||||| || ||||||    
T  140758 gagaatggagttactgggttgatttaagtcgtgaagtcg--tgtttccttaattactaactagttacctcttgattt 140832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 423
Target Start/End: Original strand, 10649924 - 10649996
Alignment:
Q  350 aatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    |||| ||| |||| ||||| |||||||||||||||| | ||||| |||||||||||||||||||| | ||||||    
T  10649924 aatggagtcactgagctgatttaagtcatgaagtcata-gtttccttaattactaactagttactacttgattt 10649996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 1882900 - 1882975
Alignment:
Q  347 gagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    ||||||| ||||| |||||||| ||||||| |||||||| | ||||| |||||||||||||| ||||| | ||||||    
T  1882900 gagaatggagttattgggctgatttaagtcgtgaagtcata-gtttccttaattactaactacttactacttgattt 1882975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 9917069 - 9917127
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc 319  Q
    ||||| ||||||||| |||||||| |||||||||||||| ||| ||||| ||| |||||    
T  9917069 tgaattttagaagtaaatagcacactctccctctcggtatttctacaaatgggcagccc 9917127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 9924981 - 9925039
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc 319  Q
    ||||| ||||||||| |||||||| |||||||||||||| ||| ||||| ||| |||||    
T  9924981 tgaattttagaagtaaatagcacactctccctctcggtatttctacaaatgggcagccc 9925039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 1873487 - 1873554
Alignment:
Q  355 agttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    ||||| |||||||| ||||||| |||||||| | ||||| |||||||||||||| ||||| | ||||||    
T  1873487 agttattgggctgatttaagtcgtgaagtcata-gtttccttaattactaactacttactacttgattt 1873554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 422
Target Start/End: Original strand, 23265682 - 23265844
Alignment:
Q  262 gaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccag--acgtatactttaccaaggtgcgaggagaatgaagtta 359  Q
    |||||||||||| ||||| |||| ||||| |||||||||||| ||||||| | | ||| |   || | ||| |||||||||||  |||||||||||||||    
T  23265682 gaatcttagaagcacataacacactctccatctcggtagttctacaaacgagcaaccctatcaacatctaccttaccaaggtgaaaggagaatgaagtta 23265781  T
Q  360 ctgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatt 422  Q
     |||||||| ||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||    
T  23265782 ttgggctgatttaagtcgtgaagtcacatgtttccttaattagtaactagctacttcctgatt 23265844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 414
Target Start/End: Complemental strand, 19762815 - 19762660
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||  |||||   ||| ||| ||| |||||||||||| || |||||| |||    
T  19762815 tgaatcttagaagtacattgcacactctccctctcggtagttctccaaacggacagccctatcag-cgtctaccttaccaaggtgcaagaagaatggagt 19762717  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttact 414  Q
    || |||||||| ||||| | ||||||||| |||||| ||||||||||||||||||||    
T  19762716 tattgggctgatttaagacgtgaagtcacttgtttccttaattactaactagttact 19762660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 261 - 422
Target Start/End: Original strand, 26252367 - 26252529
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||||||||||||||||| ||||||||||||||||||  |||||||| |||||   ||| | | ||| |||||||  | | |||||||||||||    
T  26252367 tgaatcttagaagtacatagcacactctccctctcggtagttctgcaaacgggcagccctatcag-catctaccttaccaa-tttctaggagaatgaagt 26252464  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatt 422  Q
    ||||| | ||| || |||| ||||||||||| ||||  ||| |||||||||||||||||||||||    
T  26252465 tactgtgttgatttcagtcgtgaagtcacatctttctctaactactaactagttacttcctgatt 26252529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 418
Target Start/End: Complemental strand, 24164577 - 24164428
Alignment:
Q  271 aagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagttactgggctg 367  Q
    |||||||||||||| |||||||||  ||| ||| ||||| ||| |||||   ||| ||| ||| |||||||||| ||| ||||||| | |||||||||||    
T  24164577 aagtacatagcacactctccctcttagtacttctacaaatgggcagccctatcag-cgtctaccttaccaaggttcgaagagaatggaattactgggctg 24164479  T
Q  368 agttaagtcatgaagtcacatgtttcattaattactaactagttacttcct 418  Q
    | ||||||||||||||||| |||||| ||||||| ||||||||||| ||||    
T  24164478 atttaagtcatgaagtcacttgtttccttaattaataactagttacatcct 24164428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 418
Target Start/End: Complemental strand, 17470816 - 17470657
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||| |||||||| || | |||||||||| ||||||| ||||||||| | |||   |||  || ||| ||||||||||||||||||||||||||    
T  17470816 tgaatcttaggagtacataacaaactctccctctcagtagttctacaaacgggaatccctatcagt-gtctaccttaccaaggtgcgaggagaatgaagt 17470718  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcct 418  Q
    || ||| || | ||||| ||||||||||| |||||| ||||||| ||| ||||||| ||||    
T  17470717 tattggactaatttaagacatgaagtcacttgtttccttaattaataattagttacatcct 17470657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 261 - 418
Target Start/End: Complemental strand, 17171097 - 17170938
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||| |||||||| |||| ||||||||| | |||||| |||||| || |||||   ||| ||| ||| ||||||||||  |||||||||| | |    
T  17171097 tgaatcttagcagtacataacacactctccctcttgatagttctacaaacaggcagccctatcag-cgtctaccttaccaaggtttgaggagaatggaat 17170999  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcct 418  Q
    |||||| |||| ||||||||||||||| | | |||| ||||||| ||||||||||| ||||    
T  17170998 tactggcctgatttaagtcatgaagtcgcctatttccttaattaataactagttacatcct 17170938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 18416795 - 18416877
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttact 414  Q
    |||||||||||||||| ||||| ||||| |||||||| ||||||| ||||||||| ||||||  |||||||||||||||||||    
T  18416795 ttaccaaggtgcgaggggaatgtagttattgggctgatttaagtcgtgaagtcacttgtttccataattactaactagttact 18416877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 286 - 423
Target Start/End: Original strand, 26066707 - 26066846
Alignment:
Q  286 tctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaag 382  Q
    |||||||||||||||||| ||||||||| |||||   ||| ||| ||  |||||||||||||||||||||| |||||||   |||| ||||||| |||||    
T  26066707 tctccctctcggtagttctacaaacgggcagccctatcag-cgtctaacttaccaaggtgcgaggagaatggagttactacactgatttaagtcgtgaag 26066805  T
Q  383 tcacatgtttcattaattactaactagttacttcctgattt 423  Q
    | || |||||| |||| |||||| |||||||| ||||||||    
T  26066806 taacttgtttccttaagtactaattagttactacctgattt 26066846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 413
Target Start/End: Original strand, 9521349 - 9521499
Alignment:
Q  265 tcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagcccca--gacgtatactttaccaaggtgcgaggagaatgaagttactg 362  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||  | ||| |    ||| |||||||| ||||||  ||||||||| ||||| |     
T  9521349 tcttagaagtacatagcacactctccctctcggtagttctacaaacggacaaccctatcatcgtctactttacgaaggtgaaaggagaatggagttatta 9521448  T
Q  363 ggctgagttaagtcatgaagtcacatgtttcattaattactaactagttac 413  Q
      |||| ||||||| | ||||||  |||||| |||||||||||||||||||    
T  9521449 tactgatttaagtcgtaaagtcaattgtttccttaattactaactagttac 9521499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 332 - 423
Target Start/End: Original strand, 17635912 - 17636003
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    ||||||||||| |||||||||  |||||| |||| || ||||||| ||||||||| |||||| ||||||| ||||||||||  |||||||||    
T  17635912 ttaccaaggtgtgaggagaatagagttaccgggcagatttaagtcgtgaagtcacttgtttccttaattattaactagttatatcctgattt 17636003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 423
Target Start/End: Original strand, 26314304 - 26314395
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    |||| ||||||||||||||||| |||| || | |||| ||||||  ||||||||| |||||| |||||||||||||| ||||| || |||||    
T  26314304 ttactaaggtgcgaggagaatggagttgctagactgatttaagttgtgaagtcacttgtttccttaattactaactacttactaccagattt 26314395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 25579415 - 25579308
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||||||||||||||| | |||||||||||||| ||| | ||| | | | |||   ||| ||| ||| ||||||||||| ||||||||||||||    
T  25579415 tgaatcttagaagtacatagcatactctccctctcggtatttctataaatgagcacccctatcag-cgtctaccttaccaaggtgagaggagaatgaagt 25579317  T
Q  358 tactgggct 366  Q
    |||||||||    
T  25579316 tactgggct 25579308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 32448627 - 32448712
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcc 417  Q
    |||||||||||||| ||||||||||||| ||  |||  ||| ||||||||||||| | | |  |||||||||||||||||||||||    
T  32448627 ttaccaaggtgcgaagagaatgaagttattgaactggtttatgtcatgaagtcacttatattcttaattactaactagttacttcc 32448712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 423
Target Start/End: Original strand, 15544629 - 15544790
Alignment:
Q  258 tattgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatga 354  Q
    |||||||||||||| | |||||||||| ||||||||||||||||   ||||||||| || ||   |||  || ||  ||||||||||   ||||||||||    
T  15544629 tattgaatcttagagg-acatagcacactctccctctcggtagt---acaaacgggcagtcctatcagt-gtctatcttaccaaggttttaggagaatga 15544723  T
Q  355 agttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    ||||||| | |||| ||||||| ||||||||| ||||||  ||||||   | |||||||||||||||||    
T  15544724 agttacttgactgatttaagtcgtgaagtcacttgtttccctaatta--gattagttacttcctgattt 15544790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 27920976 - 27920917
Alignment:
Q  261 tgaatcttagaagtacat-agcacattctccctctcggtagttccacaaacgggtagccc 319  Q
    |||||||||||||||||| |||| |||||||||||| | ||||| ||||||||| |||||    
T  27920976 tgaatcttagaagtacatcagcatattctccctctcagcagttctacaaacgggcagccc 27920917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 402
Target Start/End: Original strand, 26308274 - 26308328
Alignment:
Q  348 agaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattac 402  Q
    |||| ||||||| |||||||| ||||||||||||||||| ||||||  |||||||    
T  26308274 agaaggaagttattgggctgatttaagtcatgaagtcacttgtttcgctaattac 26308328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 112136 - 112075
Alignment:
Q  258 tattgaatcttagaagtacat-agcacattctccctctcggtagttccacaaacgggtagcc 318  Q
    |||||||||||||||| |||| |||| ||||||||||| | ||||||  |||||||||||||    
T  112136 tattgaatcttagaaggacatcagcatattctccctctggatagttcttcaaacgggtagcc 112075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 17830685 - 17830741
Alignment:
Q  258 tattgaatcttagaagtacat-agcacattctccctctcggtagttccacaaacggg 313  Q
    |||| ||||||||||| |||| |||||| ||| |||||||||||||| |||||||||    
T  17830685 tattaaatcttagaaggacattagcacactcttcctctcggtagttcaacaaacggg 17830741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 261 - 404
Target Start/End: Complemental strand, 821065 - 820920
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| |   ||| ||| ||| |||| || |||| || |||||| |||    
T  821065 tgaatcttagaagtacatagcacactctccctctcggtagttctacaaacgggaagctctatcag-cgtctaccttacgaatgtgcaagaagaatggagt 820967  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattacta 404  Q
    ||||||||||| ||||||  ||||||||| |||||| ||||||||||    
T  820966 tactgggctgatttaagttgtgaagtcacttgtttccttaattacta 820920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 424
Target Start/End: Original strand, 314615 - 314780
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccag--acgtatactttaccaaggtgcgaggagaatgaagtt 358  Q
    ||||||||| ||||||||||||| || |||||||||||| ||| |||||| |  || || |   || | ||| |||| |||||||||| |||||| ||||    
T  314615 tgaatcttacaagtacatagcacgttgtccctctcggtaattctacaaacagacagtcctatcaacatctaccttacgaaggtgcgagaagaatggagtt 314714  T
Q  359 actgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatttt 424  Q
    ||||| || | ||||||||||||||||| |||||| ||||||||||||||||| || ||| |||||    
T  314715 actggactaatttaagtcatgaagtcacttgtttccttaattactaactagtttctacctaatttt 314780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 419
Target Start/End: Original strand, 22245860 - 22246011
Alignment:
Q  270 gaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagttactgggct 366  Q
    ||||||||||||||| | | |||||| ||||||| |||||||||||||||   |||  || ||| | ||||||||| |||||||||| |||||||| |||    
T  22245860 gaagtacatagcacacttttcctctcagtagttctacaaacgggtagccctatcagt-gtctacctcaccaaggtgagaggagaatggagttactgagct 22245958  T
Q  367 gagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctg 419  Q
    || ||||||| ||||||||  |||||| ||||||||||| ||||||| |||||    
T  22245959 gatttaagtcgtgaagtcaattgtttccttaattactaattagttacatcctg 22246011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 423
Target Start/End: Original strand, 6290444 - 6290535
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    ||||||||||||||| |||||||||||| || ||||| ||||||||||||||||| || ||| ||||||||| |||| ||||| ||||||||    
T  6290444 ttaccaaggtgcgagtagaatgaagttattgtgctgatttaagtcatgaagtcacttggttccttaattacttactaattactacctgattt 6290535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 13907740 - 13907658
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttact 414  Q
    |||||||||||||| ||||||| ||||||| || ||| ||||||| ||||||||| |||||| ||||||||||||||||||||    
T  13907740 ttaccaaggtgcgaagagaatggagttactaggttgatttaagtcgtgaagtcacttgtttccttaattactaactagttact 13907658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 422
Target Start/End: Complemental strand, 27854079 - 27853917
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccccaga--cgtatactttaccaaggtgcgaggagaatgaagtt 358  Q
    ||||||||||||| ||||| |||| ||||| ||||| |||||| ||||||| | ||||| |    ||| ||| ||| |||||||  ||  || || ||||    
T  27854079 tgaatcttagaagcacataacacactctcc-tctcgatagttctacaaacgagaagccctattagcgtctaccttatcaaggtgaaagatgagtggagtt 27853981  T
Q  359 actgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatt 422  Q
    ||| |||||| ||||||| |||||| || |||||| | |||||||||||||||||||| |||||    
T  27853980 actaggctgatttaagtcgtgaagtaacctgtttcctaaattactaactagttacttcgtgatt 27853917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 21018487 - 21018561
Alignment:
Q  347 gagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    ||||||| ||||| |||| ||| ||||||| ||||||||  | |||| |||||||||||||||||||| ||||||||    
T  21018487 gagaatggagttattgggttgatttaagtcgtgaagtca--tttttccttaattactaactagttactacctgattt 21018561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 21019366 - 21019326
Alignment:
Q  345 aggagaatgaagttactgggctgagttaagtcatgaagtca 385  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  21019366 aggagaatgaagttactaggttgagttaagtcatgaagtca 21019326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 20885738 - 20885789
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgg 312  Q
    ||||||||||||| |||||||||||||||||||| | |||||  ||||||||    
T  20885738 tgaatcttagaagcacatagcacattctccctcttgatagttatacaaacgg 20885789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 20885818 - 20885880
Alignment:
Q  355 agttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcct 418  Q
    |||||||||||||| || |||| ||||||||| |||||| ||||||| | ||||||||||||||    
T  20885818 agttactgggctgatttcagtcgtgaagtcacttgtttccttaatta-ttactagttacttcct 20885880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 260 - 424
Target Start/End: Complemental strand, 5052473 - 5052307
Alignment:
Q  260 ttgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaag 356  Q
    |||| ||||||||||||||| |||| |||||| ||| ||||||| |||||| || | |||   ||| | | ||| |||||||||||||||||||||| ||    
T  5052473 ttgagtcttagaagtacataacacactctcccactctgtagttctacaaacaggcaaccctatcag-catctaccttaccaaggtgcgaggagaatggag 5052375  T
Q  357 ttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatttt 424  Q
     ||||||| | | ||||||||||||||||| |||||| |||||||| ||||||||||| ||| |||||    
T  5052374 ctactgggttaatttaagtcatgaagtcacttgtttccttaattaccaactagttactacctaatttt 5052307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 392
Target Start/End: Original strand, 17977161 - 17977294
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    |||||||||||||||||||||||| | |||||||||||||||  ||||||||| |||||   ||| ||| | | |||||||||||| ||||||||| |||    
T  17977161 tgaatcttagaagtacatagcacactatccctctcggtagttttacaaacgggaagccctatcag-cgtctgccttaccaaggtgcaaggagaatggagt 17977259  T
Q  358 tactgggctgagttaagtcatgaagtcacatgttt 392  Q
    |||| |||||| ||||||| ||||||||| |||||    
T  17977260 tactaggctgatttaagtcgtgaagtcacttgttt 17977294  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 261 - 414
Target Start/End: Original strand, 24905182 - 24905337
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc---cagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    ||||||| |||||||||||| ||| |||  ||||||||||||| |||||| || |||||   |||  || ||| |||||||||||||||||||||| | |    
T  24905182 tgaatctaagaagtacatagaacactctatctctcggtagttctacaaacaggcagccctatcagt-gtctaccttaccaaggtgcgaggagaatggact 24905280  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttact 414  Q
    || |||| ||| ||||||  ||||||||| |||||| | ||||||||||||||||||    
T  24905281 tattgggttgatttaagtggtgaagtcacttgtttcctcaattactaactagttact 24905337  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 346 - 423
Target Start/End: Original strand, 30486848 - 30486925
Alignment:
Q  346 ggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgattt 423  Q
    |||||||||||||| ||| |||| ||||||||||||||||| |||||  ||||||||||| |||||||| ||||||||    
T  30486848 ggagaatgaagttattggactgatttaagtcatgaagtcacgtgttttcttaattactaattagttactacctgattt 30486925  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 424
Target Start/End: Original strand, 5855645 - 5855810
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagcc---ccagacgtatactttaccaaggtgcgaggagaatgaagt 357  Q
    ||||||||||||| ||||| |||| |||||||||| ||||||| ||||||||| | ||   |||| |||  || ||||| |||||  || | |  | |||    
T  5855645 tgaatcttagaagcacataacacactctccctctcagtagttctacaaacgggcaaccttaccag-cgtccaccttaccgaggtgaaagaaaagcggagt 5855743  T
Q  358 tactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctgatttt 424  Q
    ||||||||| | |||||||   ||||||| |||||| ||||||||||| |||||| |||||||||||    
T  5855744 tactgggctaatttaagtcgcaaagtcacttgtttccttaattactaaatagttaattcctgatttt 5855810  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 24381283 - 24381227
Alignment:
Q  336 caaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgttt 392  Q
    |||| ||||||||||||| ||||||| |||||| ||||||||||||||||| |||||    
T  24381283 caagatgcgaggagaatggagttacttggctgatttaagtcatgaagtcacttgttt 24381227  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 15064908 - 15064859
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaac 310  Q
    |||||| |||||| |||||||||| |||||||||||||||||| ||||||    
T  15064908 tgaatcatagaagcacatagcacactctccctctcggtagttctacaaac 15064859  T

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Target: scaffold0019 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 332 - 420
Target Start/End: Complemental strand, 183957 - 183869
Alignment:
Q  332 ttaccaaggtgcgaggagaatgaagttactgggctgagttaagtcatgaagtcacatgtttcattaattactaactagttacttcctga 420  Q
    |||| |||||| ||||| |||| |||||||||||||| ||||||||||||||||| |||||| |||||||| ||||||||||| |||||    
T  183957 ttactaaggtgtgaggaaaatggagttactgggctgatttaagtcatgaagtcacttgtttccttaattaccaactagttactgcctga 183869  T

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Target: scaffold0019; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 425
Target Start/End: Original strand, 27166 - 27211
Alignment:
Q  380 aagtcacatgtttcattaattactaactagttacttcctgattttg 425  Q
    |||||||  ||||| |||||||||||||||||| ||||||||||||    
T  27166 aagtcacccgtttccttaattactaactagttatttcctgattttg 27211  T

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Target: scaffold0128 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 138 - 80
Alignment:
Q  261 tgaatcttagaagtacatagcacattctccctctcggtagttccacaaacgggtagccc 319  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||||    
T  138 tgaatcttagaagtacatagcacactccccctctcggtagttctacaaacgggaagccc 80  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 14944 - 14872
Alignment:
Q  353 gaagttactgggctgagttaagtcatgaagtcacatgtttcattaattact-aactagttacttcctgatttt 424  Q
    ||||||||  |||||| ||| ||  |||||||||||||||| ||||||||| ||||||| | |||||||||||    
T  14944 gaagttacatggctgatttaggttgtgaagtcacatgtttccttaattactcaactagtgaattcctgatttt 14872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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