View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21075_high_2 (Length: 439)
Name: NF21075_high_2
Description: NF21075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21075_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 4172055 - 4172476
Alignment:
| Q |
1 |
atcttcctcattaatccacttcttcaaattatgaaatgaaacattaaatttaggatcaagaacacactcaaccattggagctaaacaaagttcagtccct |
100 |
Q |
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| T |
4172055 |
atcttcctcataaatccacttcttgaaattatgaaatgaaacattaaatttaggatcaagaacacactcaaccattggagctaaacaaagttcagtccct |
4172154 |
T |
|
| Q |
101 |
ttaacaagaagctctgaagtaactgtgagagcataagcttcttcttcattttccaattcttgattcgttactatctcaaagaatccattgtgtgcaagga |
200 |
Q |
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| T |
4172155 |
ttaacaagaagctctgaagtaactgtgagagcataagcttcttcttcattttccaattcttgattcgttactatctcaaagaatccattgtgtgcaagga |
4172254 |
T |
|
| Q |
201 |
gacgcatgagacgctgcacattatcgactttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtagataat |
300 |
Q |
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| T |
4172255 |
gacgcatgagacgctgcacgttatcgactttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtagataat |
4172354 |
T |
|
| Q |
301 |
agttggtatgtccatttcaactgaccatttaagagacatggaatctatgaaagcatacatgtttttgtataatagagcttgtgctttgaaaatttcactt |
400 |
Q |
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| T |
4172355 |
agttggtatgtccatttcaactgaccatttaagagacatggaatctatgaaagcatacatgtttttgtataatagagcttgtgctttgaaaatttcactt |
4172454 |
T |
|
| Q |
401 |
gctttacggttatttattgaag |
422 |
Q |
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| T |
4172455 |
gctttacggttatttattgaag |
4172476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 53 - 420
Target Start/End: Complemental strand, 4159895 - 4159528
Alignment:
| Q |
53 |
ggatcaagaacacactcaaccattggagctaaacaaagttcagtccctttaacaagaagctctgaagtaactgtgagagcataagcttcttcttcatttt |
152 |
Q |
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| T |
4159895 |
ggatcaagaacacactcaaccattggagctaaacaaagttcagttcctttaacaagaagctctgaagcaacagtgagagcataagcttcttcttcatttt |
4159796 |
T |
|
| Q |
153 |
ccaattcttgattcgttactatctcaaagaatccattgtgtgcaaggagacgcatgagacgctgcacattatcgactttggttgatggaatttgaagaat |
252 |
Q |
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| T |
4159795 |
ctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgctgcacgttatcgactttggttgatggaatttgaagaat |
4159696 |
T |
|
| Q |
253 |
tgaaactaagtttgaaagagtaattggtttgccatgattgtagataatagttggtatgtccatttcaactgaccatttaagagacatggaatctatgaaa |
352 |
Q |
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| T |
4159695 |
tgaaactaagtttgaaagagtaattggtttgccatgattgtggataatatttggtatgttcatctcaattgaccatttcagagacatagaatctacaaag |
4159596 |
T |
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| Q |
353 |
gcatacatgtttttgtataatagagcttgtgctttgaaaatttcacttgctttacggttatttattga |
420 |
Q |
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| T |
4159595 |
gcatacatgtttttgtataataaagcttgtgctttaaaaatttcacttggttttcggttattgattga |
4159528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 53 - 401
Target Start/End: Original strand, 4177730 - 4178063
Alignment:
| Q |
53 |
ggatcaagaacacactcaaccattggagctaaacaaagttcagtccctttaacaagaagctctgaagtaactgtgagagcataagcttcttcttcatttt |
152 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||| | ||| |||||||||||||||||| ||| ||||||||||||| |||||||| ||| |
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| T |
4177730 |
ggatcaagaacacactcaaccattggtgctaaacaaagatcactacctctaacaagaagctctgaagcaacagtgagagcataagactcttcttctttt- |
4177828 |
T |
|
| Q |
153 |
ccaattcttgattcgttactatctcaaagaatccattgtgtgcaaggagacgcatgagacgctgcacattatcgactttggttgatggaatttgaagaat |
252 |
Q |
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| T |
4177829 |
--------------gtaattatctcaaagaatccgttgtgcgcgaggtaacgcatgagacgccgcacgttacctattttcgacgatggaacttgaagaat |
4177914 |
T |
|
| Q |
253 |
tgaaactaagtttgaaagagtaattggtttgccatgattgtagataatagttggtatgtccatttcaactgaccatttaagagacatggaatctatgaaa |
352 |
Q |
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||||||||| |||||||| | |||||||||||||||||||| |||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||| |
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| T |
4177915 |
tgaaactaaatttgaaagtgaaattggtttgccatgattgtgaataatatttggtatgttcatttcaacagcccatttaagagacatggaatctatgaag |
4178014 |
T |
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| Q |
353 |
gcatacatgtttttgtataatagagcttgtgctttgaaaatttcacttg |
401 |
Q |
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||| | |||| ||||||||||| ||||||||| |||||||||||||||| |
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| T |
4178015 |
gcaaatatgtgtttgtataataaagcttgtgccttgaaaatttcacttg |
4178063 |
T |
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