View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21075_low_1 (Length: 649)
Name: NF21075_low_1
Description: NF21075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21075_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 12 - 632
Target Start/End: Original strand, 38396879 - 38397496
Alignment:
| Q |
12 |
acatcatctgttgctctggtacggaaactaaaggatcagctcattcaagctaaagtttatctttcccttcagaaaataaagaaaattccctatctcactc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38396879 |
acatcatctgttgctctggtacggaaactaaaggatcagctcatccaagctaaagtttatctttcccttcagaaaataaagaaaattccctatctcactc |
38396978 |
T |
|
| Q |
112 |
gggagcttcagttacgggtaaaggaaatttcgcgaacacttggagatgcaagcaaagattctagcttgccaaagaagtaagtgagcctttaagaatcttc |
211 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38396979 |
gggagcttcagttacgggtaaaggaaatttcacgaacacttggagatgcaagcaaagattctagcttgccaaagaagtaagtgagcctttaagaatcttc |
38397078 |
T |
|
| Q |
212 |
atgtcatcaggattttccaattttattgtagctagtaagttagnnnnnnnnnnnnnnncaaatggggaagggggaatttttattgattcacgtagcacta |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38397079 |
atgtcatcaggattttccaattttattgtagctagtaagttagtttttttttttt---caaatggggaagggggaatttttattgattcacgtagcacta |
38397175 |
T |
|
| Q |
312 |
attgccattttacaactgtccccaatgggattcgagctcaacatcttgaggttacaaggctacgctttaaccactgagctatcacctcacgtgtcagcca |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
38397176 |
attgccattttacaactgtccccaatgggattcgagctcaacatcttgaggttacaaggctacgctttaaccactgagctatcccctcacgtgtcagcta |
38397275 |
T |
|
| Q |
412 |
tgacgttagttatttcatctttaactttattctgcagcagcatataaatatgttgaatagtttagctctgcactgatctacattcattatccggtttaaa |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38397276 |
tgacgttagttatttcatctttaactttattctgcagcagcatataaatatgttgaatagtttagctctgcactgatctacattcattatccggtttaaa |
38397375 |
T |
|
| Q |
512 |
cttacatttgtaatactactaatgcagtgcaaacgagagaatgaaggcaatggagcaatcattgatgaaaggaagaaaaattcaaaatgattgtgccaca |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38397376 |
cttacatttgtaatactactaatgcagtgcaaacgagagaatgaaggcaatggagcaatcattgatgaaaggaagaaaaattcaaaatgattgtgccaca |
38397475 |
T |
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| Q |
612 |
gctgcgaagaagcttagggct |
632 |
Q |
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||||||||||||||||||||| |
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| T |
38397476 |
gctgcgaagaagcttagggct |
38397496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 517 - 615
Target Start/End: Complemental strand, 56070343 - 56070245
Alignment:
| Q |
517 |
atttgtaatactactaatgcagtgcaaacgagagaatgaaggcaatggagcaatcattgatgaaaggaagaaaaattcaaaatgattgtgccacagctg |
615 |
Q |
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||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |
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| T |
56070343 |
atttgtaattctactaatgcagtgaaaatgagagaatgaaggcaatggagcaatcattgatgaaagcaagtcaaattcaagatgattgtgccacagctg |
56070245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 56070498 - 56070404
Alignment:
| Q |
111 |
cgggagcttcagttacgggtaaaggaaatttcgcgaacacttggagatgcaagcaaagattctagcttgccaaagaagtaagtgagcctttaaga |
205 |
Q |
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|||||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||| |||||||| ||||||||| | ||||||||| |
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| T |
56070498 |
cgggagcttcagttacgggtgaaggaagtttcacgaacgcttggagatgcaagcaaagattccgacttgccaaggaagtaagtaatcctttaaga |
56070404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 56070564 - 56070513
Alignment:
| Q |
30 |
gtacggaaactaaaggatcagctcattcaagctaaagtttatctttcccttc |
81 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
56070564 |
gtacagaaactaaaggatcagctcatccaagctaaagtttatctttcccttc |
56070513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 281 - 399
Target Start/End: Complemental strand, 50892338 - 50892219
Alignment:
| Q |
281 |
gggggaatttttattgattcacgtagcactaattgccattttacaa-ctgtccccaatgggattcgagctcaacatcttgaggttacaaggctacgcttt |
379 |
Q |
| |
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|||| ||| |||||||||||| || |||||||| | ||||||||| || | ||| | |||||| || |||| || |||||||||||||||||| ||| | |
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| T |
50892338 |
ggggaaatatttattgattcaagtggcactaatggaaattttacaaactatgcccgaggggattagaactcagcaccttgaggttacaaggctaagctct |
50892239 |
T |
|
| Q |
380 |
aaccactgagctatcacctc |
399 |
Q |
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|||||||||||| |||||| |
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| T |
50892238 |
taccactgagctagcacctc |
50892219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 25573324 - 25573384
Alignment:
| Q |
277 |
ggaagggggaa-tttttattgattcacgtagcactaattgccattttacaactgtccccaa |
336 |
Q |
| |
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||||||||||| |||||||||||||| || ||||||| |||||||||||||||||||||| |
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| T |
25573324 |
ggaagggggaaatttttattgattcaagtggcactaacggccattttacaactgtccccaa |
25573384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 405
Target Start/End: Original strand, 20159424 - 20159510
Alignment:
| Q |
319 |
ttttacaactgtccccaatgggattcgagctcaacatcttgaggttacaaggctacgctttaaccactgagctatcacctcacgtgt |
405 |
Q |
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|||||| ||||||| ||| |||| |||| || |||| |||||| ||||||||||| ||| |||||||||| ||| ||||||| |||| |
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| T |
20159424 |
ttttacgactgtcctcaaggggactcgaactgaacaccttgagattacaaggctaggctctaaccactgaactagcacctcaagtgt |
20159510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 373
Target Start/End: Complemental strand, 43710697 - 43710595
Alignment:
| Q |
271 |
aaatggggaagggggaatttttattgattcacgtagcactaattgccattttacaactgtccccaatgggattcgagctcaacatcttgaggttacaagg |
370 |
Q |
| |
|
||||||||||||||||| ||||||| |||| || ||| || |||||| |||||||||||| | ||||||||| ||||||| || | |||||||||| |
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| T |
43710697 |
aaatggggaagggggaaattttattatttcatgtggcatcgatgaccatttcacaactgtccccgaggggattcgaactcaacacctcggggttacaagg |
43710598 |
T |
|
| Q |
371 |
cta |
373 |
Q |
| |
|
||| |
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|
| T |
43710597 |
cta |
43710595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 10169426 - 10169496
Alignment:
| Q |
103 |
atctcactcgggagcttcagttacgggtaaaggaaatttcgcgaacacttggagatgcaagcaaagattct |
173 |
Q |
| |
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|||||||||||||||||| ||| |||| || ||| |||| |||||||| ||||| |||| |||||||||| |
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| T |
10169426 |
atctcactcgggagcttcgtttaagggttaaagaagtttcacgaacactcggagaagcaaccaaagattct |
10169496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 36198890 - 36198982
Alignment:
| Q |
308 |
actaattgccattttacaactgtccccaatgggattcgagctcaacatcttgaggttacaaggctacgctttaaccactgagctatcacctca |
400 |
Q |
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|||||| | ||||||||||| ||||| | |||||| || |||| | |||||||||||||||||| ||| | |||||| ||||| ||||||| |
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| T |
36198890 |
actaatggtcattttacaaccatccccgaggggatttgaactcagtaccttgaggttacaaggctaagctcttaccactaagctagcacctca |
36198982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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