View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21075_low_11 (Length: 238)

Name: NF21075_low_11
Description: NF21075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21075_low_11
NF21075_low_11
[»] chr5 (21 HSPs)
chr5 (64-207)||(39213361-39213507)
chr5 (105-199)||(40899941-40900035)
chr5 (112-199)||(27580623-27580710)
chr5 (138-199)||(6753687-6753748)
chr5 (106-199)||(7827923-7828016)
chr5 (105-199)||(1248600-1248694)
chr5 (105-199)||(21060653-21060747)
chr5 (106-199)||(8725006-8725099)
chr5 (106-199)||(27542818-27542911)
chr5 (106-199)||(40530221-40530314)
chr5 (88-168)||(9637873-9637953)
chr5 (120-204)||(25494942-25495026)
chr5 (152-199)||(6315820-6315867)
chr5 (106-200)||(31655075-31655169)
chr5 (106-194)||(4818579-4818667)
chr5 (152-199)||(38161455-38161502)
chr5 (157-199)||(6754052-6754094)
chr5 (89-203)||(8099847-8099961)
chr5 (157-199)||(29374365-29374407)
chr5 (161-199)||(29856070-29856108)
chr5 (106-199)||(8698332-8698425)
[»] chr4 (38 HSPs)
chr4 (92-199)||(23915421-23915528)
chr4 (107-198)||(5841433-5841524)
chr4 (105-199)||(17114463-17114557)
chr4 (105-199)||(47773023-47773117)
chr4 (106-199)||(11907604-11907697)
chr4 (106-195)||(49428347-49428436)
chr4 (106-199)||(52859804-52859897)
chr4 (88-199)||(11024877-11024988)
chr4 (106-199)||(38405107-38405200)
chr4 (106-199)||(40122859-40122952)
chr4 (106-199)||(33790736-33790829)
chr4 (106-199)||(47464370-47464463)
chr4 (106-190)||(42517643-42517727)
chr4 (115-207)||(7270453-7270549)
chr4 (105-199)||(3689585-3689679)
chr4 (106-192)||(7061669-7061755)
chr4 (157-199)||(19265831-19265873)
chr4 (105-199)||(38502486-38502580)
chr4 (90-199)||(39157862-39157972)
chr4 (157-199)||(52247484-52247526)
chr4 (157-199)||(53346782-53346824)
chr4 (106-199)||(2066812-2066905)
chr4 (106-195)||(16821336-16821425)
chr4 (106-199)||(21240709-21240802)
chr4 (106-199)||(34360678-34360771)
chr4 (112-189)||(36985819-36985896)
chr4 (94-198)||(10215157-10215261)
chr4 (90-190)||(17121274-17121374)
chr4 (151-199)||(49175984-49176032)
chr4 (106-189)||(28500896-28500979)
chr4 (157-199)||(17237352-17237394)
chr4 (157-199)||(49746984-49747026)
chr4 (106-199)||(6609784-6609877)
chr4 (106-191)||(6643665-6643750)
chr4 (106-199)||(11288635-11288727)
chr4 (106-199)||(32884824-32884917)
chr4 (106-199)||(35380338-35380431)
chr4 (106-199)||(43237266-43237359)
[»] chr3 (33 HSPs)
chr3 (91-207)||(39931643-39931760)
chr3 (105-199)||(30190658-30190752)
chr3 (106-199)||(37311973-37312066)
chr3 (106-199)||(37695665-37695758)
chr3 (106-199)||(43253862-43253955)
chr3 (110-198)||(34957527-34957615)
chr3 (108-199)||(53560240-53560331)
chr3 (89-207)||(29778564-29778682)
chr3 (106-199)||(19823034-19823127)
chr3 (106-199)||(24569099-24569192)
chr3 (106-199)||(37772963-37773056)
chr3 (106-190)||(8679053-8679137)
chr3 (106-202)||(10973556-10973652)
chr3 (159-199)||(37804858-37804898)
chr3 (151-199)||(39043801-39043849)
chr3 (90-194)||(47825087-47825191)
chr3 (152-199)||(36476607-36476654)
chr3 (109-199)||(12736574-12736664)
chr3 (89-192)||(27151521-27151626)
chr3 (157-199)||(33491409-33491451)
chr3 (129-199)||(34750519-34750589)
chr3 (88-194)||(47825629-47825735)
chr3 (105-199)||(52290916-52291010)
chr3 (106-199)||(23004381-23004474)
chr3 (106-199)||(37497515-37497608)
chr3 (151-199)||(44301585-44301633)
chr3 (107-199)||(51837959-51838051)
chr3 (144-199)||(54225873-54225928)
chr3 (157-199)||(19611932-19611974)
chr3 (86-207)||(3442066-3442187)
chr3 (135-204)||(48893758-48893827)
chr3 (115-183)||(27878721-27878789)
chr3 (115-199)||(43719290-43719373)
[»] chr2 (30 HSPs)
chr2 (64-199)||(38763571-38763706)
chr2 (105-199)||(31976371-31976465)
chr2 (88-189)||(34437980-34438081)
chr2 (105-197)||(16463714-16463806)
chr2 (105-199)||(14523368-14523462)
chr2 (105-199)||(36794307-36794401)
chr2 (106-199)||(16805904-16805997)
chr2 (106-199)||(16845185-16845278)
chr2 (106-199)||(8947049-8947142)
chr2 (109-201)||(26337122-26337213)
chr2 (152-199)||(15359130-15359177)
chr2 (152-199)||(26608186-26608233)
chr2 (152-199)||(37322451-37322498)
chr2 (129-199)||(33406994-33407064)
chr2 (90-192)||(33729898-33729999)
chr2 (106-199)||(16377653-16377746)
chr2 (106-199)||(17695353-17695446)
chr2 (90-187)||(42363718-42363815)
chr2 (105-207)||(9294466-9294571)
chr2 (157-204)||(12498083-12498130)
chr2 (106-197)||(39691515-39691606)
chr2 (105-199)||(39785608-39785705)
chr2 (152-199)||(43410449-43410496)
chr2 (157-199)||(43115850-43115892)
chr2 (110-199)||(25637504-25637593)
chr2 (106-199)||(35313910-35314003)
chr2 (106-199)||(36354440-36354533)
chr2 (106-187)||(45235616-45235697)
chr2 (88-152)||(30832096-30832160)
chr2 (135-199)||(30996376-30996440)
[»] chr1 (36 HSPs)
chr1 (59-187)||(44122248-44122378)
chr1 (92-203)||(49176936-49177047)
chr1 (88-166)||(15444465-15444543)
chr1 (106-199)||(37276484-37276577)
chr1 (106-199)||(39864134-39864227)
chr1 (105-199)||(49223987-49224081)
chr1 (105-199)||(40144848-40144942)
chr1 (112-198)||(41121833-41121919)
chr1 (102-199)||(20209838-20209935)
chr1 (106-199)||(30754943-30755036)
chr1 (115-199)||(15699145-15699229)
chr1 (109-192)||(36701951-36702034)
chr1 (109-192)||(36718055-36718138)
chr1 (157-199)||(22856290-22856332)
chr1 (157-199)||(35367825-35367867)
chr1 (157-199)||(52429367-52429409)
chr1 (106-199)||(16395049-16395141)
chr1 (106-199)||(21910008-21910100)
chr1 (106-195)||(31042824-31042913)
chr1 (106-199)||(38787364-38787457)
chr1 (115-199)||(7957290-7957373)
chr1 (105-193)||(32825993-32826080)
chr1 (106-190)||(34031529-34031613)
chr1 (152-199)||(917047-917094)
chr1 (152-199)||(7759238-7759285)
chr1 (157-196)||(13366002-13366041)
chr1 (152-199)||(24880899-24880946)
chr1 (106-189)||(28749024-28749107)
chr1 (157-199)||(6023702-6023744)
chr1 (157-199)||(9307650-9307692)
chr1 (130-204)||(31092237-31092311)
chr1 (106-195)||(12039109-12039198)
chr1 (106-195)||(26093421-26093510)
chr1 (106-199)||(33733265-33733357)
chr1 (152-192)||(44761579-44761619)
chr1 (159-199)||(52837303-52837343)
[»] chr6 (25 HSPs)
chr6 (87-201)||(12605442-12605556)
chr6 (89-207)||(26592337-26592455)
chr6 (109-199)||(24983450-24983540)
chr6 (106-207)||(21018774-21018875)
chr6 (105-197)||(11655943-11656035)
chr6 (105-197)||(30716925-30717017)
chr6 (59-207)||(30658887-30659031)
chr6 (90-199)||(12339983-12340091)
chr6 (106-195)||(13909451-13909540)
chr6 (90-193)||(34436204-34436310)
chr6 (105-199)||(6801954-6802048)
chr6 (151-201)||(8115081-8115131)
chr6 (105-199)||(32440642-32440736)
chr6 (106-199)||(3291766-3291859)
chr6 (151-199)||(11143630-11143678)
chr6 (89-188)||(17398876-17398974)
chr6 (157-199)||(181579-181621)
chr6 (157-195)||(15058144-15058182)
chr6 (157-207)||(21477968-21478017)
chr6 (157-199)||(23142690-23142732)
chr6 (157-194)||(1781830-1781867)
chr6 (106-207)||(2423633-2423734)
chr6 (106-195)||(13087557-13087646)
chr6 (106-199)||(29363329-29363422)
chr6 (151-195)||(6245957-6246001)
[»] scaffold0021 (1 HSPs)
scaffold0021 (106-207)||(126186-126287)
[»] chr7 (43 HSPs)
chr7 (90-199)||(7930083-7930192)
chr7 (91-199)||(29121533-29121641)
chr7 (88-207)||(17783079-17783198)
chr7 (64-197)||(14063348-14063481)
chr7 (64-197)||(14373376-14373509)
chr7 (106-199)||(34947530-34947623)
chr7 (106-199)||(41506071-41506164)
chr7 (105-199)||(7463243-7463337)
chr7 (117-207)||(15464700-15464790)
chr7 (105-199)||(43873953-43874047)
chr7 (106-199)||(83415-83508)
chr7 (106-199)||(759097-759190)
chr7 (106-199)||(11373434-11373527)
chr7 (89-182)||(25530979-25531072)
chr7 (106-199)||(26974056-26974152)
chr7 (106-179)||(27556975-27557048)
chr7 (105-193)||(42935697-42935785)
chr7 (89-200)||(7348141-7348252)
chr7 (152-199)||(30865997-30866044)
chr7 (157-199)||(21350682-21350724)
chr7 (105-199)||(32346057-32346151)
chr7 (106-199)||(3178210-3178303)
chr7 (106-199)||(9786018-9786111)
chr7 (106-199)||(13961989-13962082)
chr7 (106-199)||(16560576-16560669)
chr7 (106-199)||(16604993-16605086)
chr7 (106-199)||(21759990-21760083)
chr7 (106-199)||(24516295-24516388)
chr7 (130-207)||(47254938-47255015)
chr7 (151-199)||(25571449-25571497)
chr7 (157-199)||(2459501-2459543)
chr7 (157-199)||(24167021-24167063)
chr7 (106-192)||(38391785-38391871)
chr7 (157-199)||(46478350-46478392)
chr7 (157-190)||(2850938-2850971)
chr7 (106-199)||(5524410-5524503)
chr7 (106-199)||(22738731-22738824)
chr7 (162-195)||(31930559-31930592)
chr7 (157-198)||(42796039-42796080)
chr7 (157-197)||(8592497-8592537)
chr7 (135-207)||(25531092-25531164)
chr7 (157-197)||(28202366-28202406)
chr7 (160-200)||(36790769-36790809)
[»] chr8 (40 HSPs)
chr8 (86-203)||(3117000-3117115)
chr8 (110-207)||(5878993-5879090)
chr8 (106-197)||(26626112-26626203)
chr8 (106-193)||(42972508-42972595)
chr8 (106-199)||(9300113-9300206)
chr8 (106-199)||(31271044-31271137)
chr8 (112-199)||(44761500-44761587)
chr8 (91-201)||(11649629-11649739)
chr8 (157-199)||(17719309-17719351)
chr8 (157-199)||(31082642-31082684)
chr8 (106-199)||(1875592-1875685)
chr8 (106-199)||(21216101-21216194)
chr8 (135-207)||(135696-135768)
chr8 (105-199)||(10097990-10098084)
chr8 (157-199)||(10179998-10180040)
chr8 (157-199)||(11976987-11977029)
chr8 (92-150)||(28072123-28072181)
chr8 (64-166)||(28073531-28073633)
chr8 (105-199)||(31231753-31231847)
chr8 (105-187)||(34393953-34394035)
chr8 (157-199)||(39482638-39482680)
chr8 (129-199)||(42887023-42887093)
chr8 (114-207)||(136791-136884)
chr8 (104-201)||(396609-396706)
chr8 (106-183)||(7703156-7703233)
chr8 (90-199)||(29806265-29806374)
chr8 (151-199)||(32678426-32678474)
chr8 (105-200)||(22771834-22771929)
chr8 (86-149)||(44225670-44225733)
chr8 (109-199)||(4428354-4428444)
chr8 (109-199)||(5053156-5053246)
chr8 (59-192)||(6323288-6323420)
chr8 (88-185)||(34281094-34281190)
chr8 (106-199)||(34948687-34948780)
chr8 (106-195)||(39405789-39405878)
chr8 (105-193)||(2767290-2767378)
chr8 (157-189)||(7672392-7672424)
chr8 (151-207)||(27976670-27976726)
chr8 (151-207)||(28033939-28033995)
chr8 (107-207)||(45034482-45034582)
[»] scaffold0330 (1 HSPs)
scaffold0330 (106-199)||(5413-5506)
[»] scaffold0279 (1 HSPs)
scaffold0279 (106-179)||(12041-12114)
[»] scaffold0056 (1 HSPs)
scaffold0056 (90-188)||(71826-71924)
[»] scaffold0018 (1 HSPs)
scaffold0018 (157-199)||(136087-136129)
[»] scaffold0012 (1 HSPs)
scaffold0012 (106-199)||(105707-105800)
[»] scaffold0110 (1 HSPs)
scaffold0110 (105-199)||(1727-1821)
[»] scaffold0182 (1 HSPs)
scaffold0182 (106-199)||(20352-20445)
[»] scaffold0095 (1 HSPs)
scaffold0095 (106-195)||(50231-50320)


Alignment Details
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 207
Target Start/End: Complemental strand, 39213507 - 39213361
Alignment:
Q  64 ccctcagtctcacattaggcaacccatttgagttttataccgttattaaggaaatgattattagcgttgac---tttaatggcaaaatatgtatcgttta 160  Q
    ||||| |||||||| ||||   || |||||| ||||| || ||||||||||||||||||| || ||||||    ||||||||||||||||||||| ||||    
T  39213507 ccctccgtctcacaataggtgtcctatttgaattttacacggttattaaggaaatgattaataacgttgatgattttaatggcaaaatatgtatccttta 39213408  T
Q  161 ctaaaatacccttattaattatagttagtggagtagttatagatgat 207  Q
     ||||| || |||||||||||||||||||||||||||||||||||||    
T  39213407 ataaaacactcttattaattatagttagtggagtagttatagatgat 39213361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 40900035 - 40899941
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||||||| | | ||||| ||| ||||||||||  ||||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  40900035 gttattaaggaaatgattaattgtgttgattttgatggcaaaattagtatcatttactaaaacacccttattaattgtagttagtggagtagtta 40899941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 27580710 - 27580623
Alignment:
Q  112 aggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||| | | ||||| || ||||| |||||   |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  27580710 aggaaatgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgtagttagtggagtagtta 27580623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 6753687 - 6753748
Alignment:
Q  138 aatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| |||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6753687 aatggtaaaattagtatcatttactaaaatacccttattaattgtagttagtggagtagtta 6753748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 7827923 - 7828016
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| |||| |||| | | ||||| || ||||| |||||  ||||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  7827923 ttattaagaaaataattaattgtgttgatttcaatggtaaaattagtatcatttattaaaatacccttattaattgtagttagtggagtagtta 7828016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 1248600 - 1248694
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||| |||| |   ||||| || ||||| |||||   |||| |||||||||||||||||||||||| ||||||||| ||||||||    
T  1248600 gttattaaggaaattattaattatgttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgtagttagtgaagtagtta 1248694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 21060747 - 21060653
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||| ||||||||||| | | ||| | ||| |||| |||||  ||||  ||||||||||||| |||||||||| ||||||||||||||||||    
T  21060747 gttattagggaaatgattaattgtgtttattttgatggtaaaattagtattatttactaaaatactcttattaattgtagttagtggagtagtta 21060653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 8725006 - 8725099
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||| |||||||||| | | ||||| || ||||| |||||   |||| |||||||||| || |||||||||| ||||||||||||||||||    
T  8725006 ttattaaagaaatgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaacacacttattaattgtagttagtggagtagtta 8725099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 27542911 - 27542818
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||  | | ||||| || ||||| |||||   || | ||||||||||||| |||||||||| ||||||||||||||||||    
T  27542911 ttattaaggaaatgattgattgtgttgatttcaatggtaaaattaataccatttactaaaatactcttattaattgtagttagtggagtagtta 27542818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 40530221 - 40530314
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||| | | ||||| || ||||| |||||  ||| | |||||||||| ||||||||||||| ||||||||||||| ||||    
T  40530221 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagttagtggagtggtta 40530314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 9637953 - 9637873
Alignment:
Q  88 catttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaata 168  Q
    ||||||||||||||||   ||||||||||||||||| ||  ||||| |||||||  ||||||||| || ||||||||||||    
T  9637953 catttgagttttatacgagtattaaggaaatgattaataatgttgattttaatgataaaatatgtgtcatttactaaaata 9637873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 25495026 - 25494942
Alignment:
Q  120 attattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagat 204  Q
    |||| ||||||||| || || || ||||||||| || |||||||||| || ||  ||||| ||||||||||||||||||||||||    
T  25495026 attaatagcgttgatttcaaaggtaaaatatgtgtcatttactaaaacactctcgttaatgatagttagtggagtagttatagat 25494942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 6315820 - 6315867
Alignment:
Q  152 tatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||||||    
T  6315820 tatcatttactaaaatacccttattaattgtagttagtgaagtagtta 6315867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 31655169 - 31655075
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttat 200  Q
    ||||||| |||||||||| | | ||||| || ||||| |||||   |||| ||||||| |||| ||||||||||| |||||||||||||| ||||    
T  31655169 ttattaaagaaatgattaattgtgttgatttcaatggtaaaattaatatcatttactataatatccttattaattgtagttagtggagtaattat 31655075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 4818667 - 4818579
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagt 194  Q
    ||||||||||||| |||| | | ||||| || ||| | |||||  ||| | |||||||||| ||||||||||||| |||||||||||||    
T  4818667 ttattaaggaaataattaattgtgttgatttcaattgtaaaattagtagcatttactaaaacacccttattaattgtagttagtggagt 4818579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 38161455 - 38161502
Alignment:
Q  152 tatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| |||||||||||| ||||||||||  ||||||||||||||||||    
T  38161455 tatcatttactaaaatatccttattaatcgtagttagtggagtagtta 38161502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 6754094 - 6754052
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| || |||||||||| ||||||||||||||||||    
T  6754094 tttactaaaacactcttattaattgtagttagtggagtagtta 6754052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 8099847 - 8099961
Alignment:
Q  89 atttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttag 188  Q
    |||||||||||| ||   |||||||| |||||||||||| ||||| || ||    ||||||||  || |||||||||| | | ||||||| ||||||| |    
T  8099847 atttgagttttacacaaatattaagggaatgattattagtgttgatttcaagaataaaatatgagtcatttactaaaacatcattattaagtatagtttg 8099946  T
Q  189 tggagtagttataga 203  Q
    || ||||||||||||    
T  8099947 tgaagtagttataga 8099961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 29374407 - 29374365
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| ||| ||||||||| ||||||||||||||||||    
T  29374407 tttactaaaagacctttattaattgtagttagtggagtagtta 29374365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 29856108 - 29856070
Alignment:
Q  161 ctaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  29856108 ctaaaatactcttattaattgtagttagtggagtagtta 29856070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 8698425 - 8698332
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||| |||||||||| | | ||||| || ||||| |||||  ||  | ||||| |||| ||||||||||||| ||||||||||||| ||||    
T  8698425 ttattaaagaaatgattaattgtgttgatttcaatggtaaaattagttgcatttaccaaaacacccttattaattgtagttagtggagtggtta 8698332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 23915421 - 23915528
Alignment:
Q  92 tgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtgg 191  Q
    |||||||||  | ||||||||||||||||||| ||| ||||| |||||||| ||||||||| |  |||||||||| | | ||||||||||||||||||||    
T  23915421 tgagttttacgcagttattaaggaaatgattagtagtgttgattttaatggtaaaatatgtttaatttactaaaacatcattattaattatagttagtgg 23915520  T
Q  192 agtagtta 199  Q
    ||||||||    
T  23915521 agtagtta 23915528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 5841433 - 5841524
Alignment:
Q  107 tattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtt 198  Q
    ||||||||||||||||  | ||||||| |||||||| |||||   |||| |||||||||||||||||||||||| |||||||||||||||||    
T  5841433 tattaaggaaatgattgattgcgttgattttaatggtaaaattaatatcatttactaaaatacccttattaattgtagttagtggagtagtt 5841524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 17114557 - 17114463
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||||||| | | ||||| ||| |||| |||||  ||||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  17114557 gttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagttagtggagtagtta 17114463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 47773023 - 47773117
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||| |||| | | ||||| ||| |||| |||||  ||||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  47773023 gttattaaggaaataattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagttagtggagtagtta 47773117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 11907604 - 11907697
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| ||| |||| |||||  ||||| |||||||||| ||||||||||||| |||||| |||||||||||    
T  11907604 ttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagttattggagtagtta 11907697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 49428347 - 49428436
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagta 195  Q
    |||||||||||||||||||| | ||||| || ||||| |||||   |||  |||||||||||||||||||||||| ||||||||||||||    
T  49428347 ttattaaggaaatgattatttgtgttgatttcaatggtaaaattaatataatttactaaaatacccttattaattgtagttagtggagta 49428436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 52859804 - 52859897
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| ||| |||| |||||  ||||| |||||||||| | ||||||||||| ||||||||||||||||||    
T  52859804 ttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacatccttattaattgtagttagtggagtagtta 52859897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 11024877 - 11024988
Alignment:
Q  88 catttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagtta 187  Q
    ||||||||||||| || |  |||||| ||||||||| ||| ||||| |||||||| | ||||||| || ||||||||||||   |||||||||||| |||    
T  11024877 catttgagttttacacggaaattaagaaaatgattaatagtgttgattttaatggtataatatgtttcatttactaaaatatttttattaattataatta 11024976  T
Q  188 gtggagtagtta 199  Q
    ||| ||||||||    
T  11024977 gtgaagtagtta 11024988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 38405107 - 38405200
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| |   ||||| || ||||| |||||   |||| |||||||||||||||||||||||| |||||||||| |||||||    
T  38405107 ttattaaggaaatgattaattctgttgatttaaatggtaaaattaatatcatttactaaaatacccttattaattgtagttagtggtgtagtta 38405200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 40122859 - 40122952
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | ||||||| |||||||  |||||  ||| | |||||||||| ||||||||| ||| |||||||||||| |||||    
T  40122859 ttattaaggaaatgattaattgcgttgattttaatgttaaaattagtagcatttactaaaacacccttattgattgtagttagtggagcagtta 40122952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 33790736 - 33790829
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||| | | ||||| ||| |||| |||||  || || ||| |||||| ||||||||||||| ||||||||||||||||||    
T  33790736 ttattaagaaaatgattaattgtgttgattttgatggtaaaattagtttcatttgctaaaacacccttattaattgtagttagtggagtagtta 33790829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 47464370 - 47464463
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  ||| | |||||||||| || |||||||||| ||||| ||||||||||||    
T  47464370 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaaaactcttattaattgtagttggtggagtagtta 47464463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 42517643 - 42517727
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtg 190  Q
    |||||||| ||||||||| | | ||||| || ||||| |||||    ||| ||||||||||||||||||||||||||||||||||    
T  42517643 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattaagatcatttactaaaatacccttattaattatagttagtg 42517727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 207
Target Start/End: Original strand, 7270453 - 7270549
Alignment:
Q  115 aaatgattattagcgttgactttaatggcaaaatatgta----tcgtttactaaaatacccttattaattatagttagtggagtagttatagatgat 207  Q
    ||||||||| ||| ||| | |||||||| ||||||||||    || |||||||||| ||  |||||||||||||||||||| |||||| ||||||||    
T  7270453 aaatgattaatagtgttaattttaatggtaaaatatgtacatatcatttactaaaacacatttattaattatagttagtggtgtagttctagatgat 7270549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 3689679 - 3689585
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| |||||||||| | |  |||| ||| |||| |||||  ||||| |||||||||| || ||||||||||||||||||| |||| ||||    
T  3689679 gttattaaagaaatgattaattgtattgattttgatggtaaaattagtatcatttactaaaacactcttattaattatagttagttgagttgtta 3689585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 7061669 - 7061755
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtgga 192  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  ||||| ||||||| |||| | ||||||||| |||||||||||    
T  7061669 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtatcatttactataatatctttattaattgtagttagtgga 7061755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 19265873 - 19265831
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  19265873 tttattaaaataaccttattaattatagttagtggagtagtta 19265831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 38502486 - 38502580
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||| |||| | | ||||| ||| |||| |||||  ||||| |||| ||||||||  |||||||||||||||| || ||||||||    
T  38502486 gttattaaggaaataattaattgtgttgattttgatggtaaaattagtatcatttattaaaatacttttattaattatagttaatgtagtagtta 38502580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 39157862 - 39157972
Alignment:
Q  90 tttgagttttataccgttattaaggaaatgattattagcgttgacttta-atggcaaaatatgtatcgtttactaaaatacccttattaattatagttag 188  Q
    ||||||||||| ||  |||||||| ||||||||| | | ||| | |||  |||| ||||| ||| || ||||||||||||| |||||||||||||| |||    
T  39157862 tttgagttttacacgattattaagaaaatgattagttgtgtttaattttgatggtaaaatttgtttcatttactaaaatacacttattaattatagctag 39157961  T
Q  189 tggagtagtta 199  Q
    | |||||||||    
T  39157962 tagagtagtta 39157972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 52247484 - 52247526
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  52247484 tttactaaaatatccttattaattgtagttagtggagtagtta 52247526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 53346824 - 53346782
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| ||||||||||||| ||||||||||||||||||    
T  53346824 tttactaaaacacccttattaattttagttagtggagtagtta 53346782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 2066905 - 2066812
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| ||| |||| ||| |  ||||  |||| ||||| ||||||||||||| |||||||||| |||||||    
T  2066905 ttattaaggaaatgattaattgtgttgattttgatggtaaagttagtattatttattaaaacacccttattaattttagttagtggggtagtta 2066812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 16821336 - 16821425
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagta 195  Q
    ||||||| | |||||||| | | ||||| || ||||  |||||  ||||| ||||||| |||| ||||||||||||||||||||||||||    
T  16821336 ttattaatgcaatgattaattgtgttgatttcaatgataaaattagtatcatttactataatatccttattaattatagttagtggagta 16821425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 21240709 - 21240802
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||||||   | ||||| ||| |||| |||||  ||||| |||||||| | | ||||||||||| |||||||| |||||||||    
T  21240709 ttattaaggaaatgattaactgtgttgattttgatggtaaaattagtatcatttactaacacatccttattaattgtagttagttgagtagtta 21240802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 34360771 - 34360678
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||| |||||||||| | |  |||| || ||||| |||||  ||| | |||||||||| || |||||||||| ||||||||||||||||||    
T  34360771 ttattaaagaaatgattaattgtattgatttcaatggtaaaattagtagcatttactaaaacactcttattaattgtagttagtggagtagtta 34360678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 36985896 - 36985819
Alignment:
Q  112 aggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagt 189  Q
    |||||||||||| | | ||||| || ||||| |||||  ||||| ||||||||||||||| |||||||| ||||||||    
T  36985896 aggaaatgattaattgtgttgatttcaatggtaaaattagtatcatttactaaaatacccgtattaattgtagttagt 36985819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 10215157 - 10215261
Alignment:
Q  94 agttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggag 193  Q
    ||||||| || ||||||||  ||||||||| ||   || | |||||||| ||||||||| || || | |||||||| ||||||||||||||||| | |||    
T  10215157 agttttacacagttattaaaaaaatgattaatatttttaattttaatggtaaaatatgtttcattaattaaaatactcttattaattatagttaatagag 10215256  T
Q  194 tagtt 198  Q
    |||||    
T  10215257 tagtt 10215261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 17121374 - 17121274
Alignment:
Q  90 tttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagt 189  Q
    ||||||||||| ||  |||||||| ||||||||  ||  ||||| |||||||  ||||||||| | ||||| | ||| |||||| |||||||||||||||    
T  17121374 tttgagttttacacaattattaagaaaatgattggtattgttgattttaatgataaaatatgtttagtttattgaaacacccttgttaattatagttagt 17121275  T
Q  190 g 190  Q
    |    
T  17121274 g 17121274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 49175984 - 49176032
Alignment:
Q  151 gtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| |||||||||||| ||||||||||| ||||||| ||||||||||    
T  49175984 gtatcatttactaaaataaccttattaattgtagttagcggagtagtta 49176032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 28500896 - 28500979
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagt 189  Q
    |||||||||||||||||  | | ||||| || ||||| |||||   |||| ||||||||||||||||||||||||  |||||||    
T  28500896 ttattaaggaaatgattgattgtgttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgcagttagt 28500979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 17237352 - 17237394
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| | ||||||||||| ||||||||||||||||||    
T  17237352 tttactaaaacaaccttattaattgtagttagtggagtagtta 17237394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 49747026 - 49746984
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||| | |||||||||||||||| |||||||||    
T  49747026 tttactaaaataccttcattaattatagttagttgagtagtta 49746984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 6609877 - 6609784
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| ||| |||| |||||  ||||| ||||| |||| | | ||||||||| || ||| |||||||||||    
T  6609877 ttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttacaaaaacatctttattaattgtaattattggagtagtta 6609784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 6643665 - 6643750
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtgg 191  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  ||| | |||||||||| | | ||||||||| ||||||||||    
T  6643665 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacatctttattaattgtagttagtgg 6643750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 11288635 - 11288727
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||| | |  |||| || |||||||||||   |||| |||||||||||| | ||||||||| ||||| ||||||||||||    
T  11288635 ttattaagaaaatgattaattgtattgatttcaatggcaaaattaatatcatttactaaaatatc-ttattaattgtagttggtggagtagtta 11288727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 32884917 - 32884824
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||| | | ||||| || ||||| | |||  ||| | |||| ||||| || |||||||||| ||||||||||||||||||    
T  32884917 ttattaagaaaatgattaattgtgttgatttcaatggtagaattagtagcatttagtaaaacactcttattaattgtagttagtggagtagtta 32884824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 35380338 - 35380431
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||| |   ||||| |||||||| |||||  ||| | |||||||||| | | ||||||||| ||||||||||||| ||||    
T  35380338 ttattaagaaaatgattaattatgttgattttaatggtaaaattagtagcatttactaaaacatcattattaattgtagttagtggagtggtta 35380431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 43237359 - 43237266
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||| | || ||||| |||||  |||   |||||||||| | | ||||||||||||||||||| ||||||||    
T  43237359 ttattaaggaaatgattaattgtgtttatttcaatggtaaaattagtaatatttactaaaaaatcattattaattatagttagtgaagtagtta 43237266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 39931760 - 39931643
Alignment:
Q  91 ttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtg 190  Q
    |||| ||||| || |||||||| ||||| |||| ||| ||||| ||||||||||||||||||||| |||| ||||| || ||||||||||||||||||||    
T  39931760 ttgaattttagacggttattaaagaaattattaatagtgttgattttaatggcaaaatatgtatcatttattaaaacacacttattaattatagttagtg 39931661  T
Q  191 gagt-agttatagatgat 207  Q
     ||| | |||||||||||    
T  39931660 aagtaaattatagatgat 39931643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 30190658 - 30190752
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| ||||||||||||| | | ||||| || ||||| |||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  30190658 gttatgaaggaaatgattaattgtgttgatttcaatggtaaaattagtatcatttactaaaatacccttattaattgtagttagtggagtagtta 30190752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 37312066 - 37311973
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  ||| | |||||||||| ||||||||||||| ||||||||||||||||||    
T  37312066 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaaaacccttattaattgtagttagtggagtagtta 37311973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 37695665 - 37695758
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| || ||||| |||||   |||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  37695665 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaacacccttattaattgtagttagtggagtagtta 37695758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 43253862 - 43253955
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  ||| | |||||||||| ||||||||||||| ||||||||||||||||||    
T  43253862 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagttagtggagtagtta 43253955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 34957615 - 34957527
Alignment:
Q  110 taaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtt 198  Q
    |||||||||||||| | | ||||| ||| |||| ||||| |||||  |||||| ||||| |||||||||||||||||||||||||||||    
T  34957615 taaggaaatgattaattgtgttgaatttgatggtaaaatttgtataatttacttaaatatccttattaattatagttagtggagtagtt 34957527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 53560331 - 53560240
Alignment:
Q  108 attaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||| |   ||||| ||| |||| ||||| |||||| |||||||||| ||||||||||| |||||||||| |||||||||    
T  53560331 attaaggaaatgattaattatgttgattttgatggtaaaatttgtatcatttactaaaacacccttattaaatatagttagtagagtagtta 53560240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 29778564 - 29778682
Alignment:
Q  89 atttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttag 188  Q
    ||||||||||||||| ||||||||| |||| |||  ||   |||| |||||| ||||||  ||||||||||||| ||| ||  ||||||||||| ||| |    
T  29778564 atttgagttttatacggttattaagaaaataatttataatattgattttaatagcaaaaagtgtatcgtttactgaaacacatttattaattatggttgg 29778663  T
Q  189 tggagtagttatagatgat 207  Q
    |||| ||||||||||||||    
T  29778664 tggaatagttatagatgat 29778682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 19823127 - 19823034
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| ||| |||| | |||  ||||| |||||||||| ||||||||||||| ||||||||||| ||||||    
T  19823127 ttattaaggaaatgattaattgtgttgattttgatggtagaattagtatcatttactaaaacacccttattaattgtagttagtggaatagtta 19823034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 24569099 - 24569192
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||| | | ||||| || ||||| |||||   |||  |||||||||||||||||||||||| ||||||||||||||||||    
T  24569099 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattaatattatttactaaaatacccttattaattgtagttagtggagtagtta 24569192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 37772963 - 37773056
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | |  |||| |  ||||| |||||   |||| ||||||||||||||||||||||||||||| |||||| ||||||    
T  37772963 ttattaaggaaatgattaattgtattgattacaatggtaaaattaatatcatttactaaaatacccttattaattatagtcagtggaatagtta 37773056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 8679053 - 8679137
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtg 190  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  ||| | |||||||||| | |||||||||||||||||||||    
T  8679053 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaagatccttattaattatagttagtg 8679137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 10973652 - 10973556
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatag 202  Q
    |||||||| ||||||||| ||  ||| | ||||||| |||||| |||||| |||||||| | ||| || |||||||||||||||| | |||||||||    
T  10973652 ttattaagaaaatgattaataatgtttattttaatgacaaaatgtgtatcatttactaatagaccgttgttaattatagttagtgaaatagttatag 10973556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 37804898 - 37804858
Alignment:
Q  159 tactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  37804898 tactaaaatacccttattaattatggttagtggagtagtta 37804858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 39043801 - 39043849
Alignment:
Q  151 gtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  39043801 gtatcatttactaaaatacctttattaattgtagttagtggagtagtta 39043849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 47825191 - 47825087
Alignment:
Q  90 tttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagt 189  Q
    ||||||||||| |  ||||||||  ||||||||  ||| ||| | ||| |||| ||||||||| || ||||||||||||||||||| ||||||| ||| |    
T  47825191 tttgagttttacaaggttattaaaaaaatgattggtagtgttaattttgatggtaaaatatgtttcatttactaaaatacccttatgaattataattaat 47825092  T
Q  190 ggagt 194  Q
    |||||    
T  47825091 ggagt 47825087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 36476654 - 36476607
Alignment:
Q  152 tatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||||    
T  36476654 tatcatttactaaaatacccttattaattgtagttagtagagtagtta 36476607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 12736574 - 12736664
Alignment:
Q  109 ttaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||| | | ||||| | |||||  |||||  ||||| ||||||| |||||||||||||||| || |||||| ||||||||    
T  12736574 ttaaggaaatgattaattgtgttgattctaatgataaaattagtatcatttactacaatacccttattaattgtacttagtgtagtagtta 12736664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 27151626 - 27151521
Alignment:
Q  89 atttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgttta--ctaaaatacccttattaattatagtt 186  Q
    ||||| ||||||||| | || |||||||||||||| ||| ||||  |||||||  ||||| |||||| ||||  |||||| | | |||||||||||||||    
T  27151626 atttgggttttatacggctaataaggaaatgattaatagtgttggttttaatgataaaatgtgtatcatttactctaaaacatcattattaattatagtt 27151527  T
Q  187 agtgga 192  Q
    ||||||    
T  27151526 agtgga 27151521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 33491409 - 33491451
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| || |||||||||||||||||||||||||||||    
T  33491409 tttactaaaacactcttattaattatagttagtggagtagtta 33491451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 34750589 - 34750519
Alignment:
Q  129 gttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| |||||||| |||||  ||||| |||||||||| | ||||||||||| ||||| ||||||||||||    
T  34750589 gttgattttaatggtaaaattagtatcatttactaaaacatccttattaattgtagttggtggagtagtta 34750519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 47825735 - 47825629
Alignment:
Q  88 catttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagtta 187  Q
    ||||||||||||| |  |||||| |  ||||||||  ||| ||| | ||| |||| ||||||||| || ||||||||||||||||||| ||||||| |||    
T  47825735 catttgagttttacaaggttattgaaaaaatgattggtagtgttaattttgatggtaaaatatgtttcatttactaaaatacccttatgaattataatta 47825636  T
Q  188 gtggagt 194  Q
     ||||||    
T  47825635 atggagt 47825629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 52291010 - 52290916
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||| ||||||||| | |  |||| ||| |||| |||||  ||| | |||| ||||| | ||||||||||||||||||||||||||||||    
T  52291010 gttattaagaaaatgattaattgtattgattttgatggtaaaattagtaccatttattaaaacagccttattaattatagttagtggagtagtta 52290916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 23004381 - 23004474
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | || || || ||||| |||||  |||   | |||||||| ||||||||||||| ||||||||||||||||||    
T  23004381 ttattaaggaaatgattaattgtgtcgatttcaatggtaaaattagtagtatatactaaaacacccttattaattgtagttagtggagtagtta 23004474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 37497608 - 37497515
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||  | | ||||| ||| |||| |||||  ||||| |||||||||| ||| || |||| | ||||||||||||||||||    
T  37497608 ttattaaggaaatgatttattgtgttgattttgatggtaaaattagtatcatttactaaaacaccgttgttaactgtagttagtggagtagtta 37497515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 44301633 - 44301585
Alignment:
Q  151 gtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| ||||||||||||||||||| |||| || |||||||||||||||    
T  44301633 gtatcatttactaaaatacccttatcaattgtaattagtggagtagtta 44301585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 51837959 - 51838051
Alignment:
Q  107 tattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||| ||||||||| | | ||||| || ||||  |||||   |||| ||||||||||||||||||||| || ||| ||||||||||||||    
T  51837959 tattaagtaaatgattaattgtgttgatttcaatgataaaattaatatcatttactaaaatacccttattagttgtagctagtggagtagtta 51838051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 54225873 - 54225928
Alignment:
Q  144 aaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| ||| || |||||||||| | ||||||||||||||||||||||||| ||||    
T  54225873 aaaatgtgtttcatttactaaaacagccttattaattatagttagtggagtggtta 54225928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 19611974 - 19611932
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||| ||||||||||| | ||||||||||||||||    
T  19611974 tttactaaaatatccttattaattgttgttagtggagtagtta 19611932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 3442187 - 3442066
Alignment:
Q  86 cccatttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagt 185  Q
    |||||| |||||||| || |||||||   |||||| || ||  ||||| ||||||| |||||||||| || |||| ||||| | | ||||||||||  ||    
T  3442187 cccattagagttttacacggttattacaaaaatgaatagtaatgttgattttaatgacaaaatatgtgtcttttattaaaacatctttattaattaatgt 3442088  T
Q  186 tagtggagtagttatagatgat 207  Q
     ||||| ||| |||||||||||    
T  3442087 cagtggggtaattatagatgat 3442066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 48893827 - 48893758
Alignment:
Q  135 tttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagat 204  Q
    |||||||| ||||||| |||| ||| |||||| || ||||||||||||||||| |  | |||||||||||    
T  48893827 tttaatggtaaaatatatatcatttgctaaaacactcttattaattatagttaattaaatagttatagat 48893758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 27878789 - 27878721
Alignment:
Q  115 aaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattata 183  Q
    ||||||||| ||| ||||| ||||| |||||||| |||||| |||  ||||| | ||||||||||||||    
T  27878789 aaatgattaatagtgttgattttaacggcaaaatgtgtatcattttttaaaacatccttattaattata 27878721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 43719373 - 43719290
Alignment:
Q  115 aaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||| | | ||||| |||||||| ||||| | |||| || ||| ||| | ||||||||||| ||||||||||||||||||    
T  43719373 aaatgattaattgtgttgattttaatggtaaaat-tatatcattcactgaaacatccttattaattgtagttagtggagtagtta 43719290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 38763706 - 38763571
Alignment:
Q  64 ccctcagtctcacattaggcaacccatttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttacta 163  Q
    ||||| |||||| ||||||   ||| ||||||||||| || ||||||||||||||| ||| ||| ||||| |||||||| ||||| ||| || |||||||    
T  38763706 ccctccgtctcaaattaggtgtcccttttgagttttacacggttattaaggaaatggttagtagtgttgattttaatggtaaaatgtgtttcatttacta 38763607  T
Q  164 aaatacccttattaattatagttagtggagtagtta 199  Q
    |||||| | |||||||||||||| ||  ||||||||    
T  38763606 aaatactcatattaattatagtttgtcaagtagtta 38763571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 31976465 - 31976371
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||||||| ||| ||||| || ||| | ||||||||| || |||||||||| || |||| ||||||||||||||||||||||||    
T  31976465 gttattaaggaaatgattagtagtgttgatttcaatagtaaaatatgtttcatttactaaaacactcttaataattatagttagtggagtagtta 31976371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 34437980 - 34438081
Alignment:
Q  88 catttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagtta 187  Q
    ||||||||||||| || ||||||||  ||||||||| ||  ||||| ||||||| ||||||||||||| ||||||||||||  |||||||||||||| ||    
T  34437980 catttgagttttacacggttattaaaaaaatgattaataatgttgattttaatgacaaaatatgtatcatttactaaaatattcttattaattatagata 34438079  T
Q  188 gt 189  Q
    ||    
T  34438080 gt 34438081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 16463806 - 16463714
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagt 197  Q
    ||||||||||||||||||| | | ||||| ||| |||| |||||  ||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  16463806 gttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagttagtggagtagt 16463714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 14523368 - 14523462
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| || | ||||| || ||||| |||||   |||| |||||||||||| ||||||||||| ||||||||||||||||||    
T  14523368 gttattaaggaaatgattttttgtgttgatttcaatggtaaaattaatatcatttactaaaatatccttattaattgtagttagtggagtagtta 14523462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 36794401 - 36794307
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||||||| | | ||||| ||| |||| |||||  ||||| ||||||||||  |||||||||| | ||||||||||||||||||    
T  36794401 gttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcttttactaaaacgcccttattaactgtagttagtggagtagtta 36794307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 16805997 - 16805904
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||| |||||||||| | | ||||| |||||| | |||||  ||||| |||||||||||| ||||||||||| ||||||||||||| ||||    
T  16805997 ttattaaagaaatgattaattgtgttgattttaatagtaaaattagtatcatttactaaaatatccttattaattgtagttagtggagttgtta 16805904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 16845278 - 16845185
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||| |||||||||| | | ||||| |||||| | |||||  ||||| |||||||||||| ||||||||||| ||||||||||||| ||||    
T  16845278 ttattaaagaaatgattaattgtgttgattttaatagtaaaattagtatcatttactaaaatatccttattaattgtagttagtggagttgtta 16845185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 8947049 - 8947142
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| || ||||  |||||  |||   |||||||||| | ||||||||||||||||||||||||||||||    
T  8947049 ttattaaggaaatgattaattgtgttgatttcaatgataaaattagtaatatttactaaaacatccttattaattatagttagtggagtagtta 8947142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 26337122 - 26337213
Alignment:
Q  109 ttaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttata 201  Q
    ||||||||||||||||||  ||||| |||||||  |||||   |||| |||| ||||| |||  |||||||||||||||||||||||||||||    
T  26337122 ttaaggaaatgattattaa-gttgattttaatgttaaaattgatatcatttattaaaacacctctattaattatagttagtggagtagttata 26337213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 15359130 - 15359177
Alignment:
Q  152 tatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  15359130 tatcatttactaaaacacccttattaattgtagttagtggagtagtta 15359177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 26608186 - 26608233
Alignment:
Q  152 tatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||||||    
T  26608186 tatcatttactaaaatactcttattaattatagttagtggattagtta 26608233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 37322498 - 37322451
Alignment:
Q  152 tatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  37322498 tatcatttattaaaatacccttattaattgtagttagtggagtagtta 37322451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 33406994 - 33407064
Alignment:
Q  129 gttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| |||||||| ||||||||| || |||||  ||| ||| ||||||||||||||||||||| ||||||    
T  33406994 gttgattttaatggtaaaatatgtttcatttaccgaaacaccattattaattatagttagtggattagtta 33407064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 192
Target Start/End: Original strand, 33729898 - 33729999
Alignment:
Q  90 tttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagt 189  Q
    ||||| ||||| || ||||||||| ||||||||||||| ||||| || |||   ||||||||| |  |||| ||||||| |||||||||||||||||| |    
T  33729898 tttgaattttacacggttattaagaaaatgattattagtgttgatttcaatcataaaatatgt-ttatttattaaaatatccttattaattatagttact 33729996  T
Q  190 gga 192  Q
    |||    
T  33729997 gga 33729999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 16377653 - 16377746
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||| |||||||||| | | ||||| |  ||||| |||||   |||| ||||| |||||| ||||||||||| ||||||||||||||||||    
T  16377653 ttattaaagaaatgattaattgtgttgattacaatggtaaaattaatatcatttaccaaaataaccttattaattgtagttagtggagtagtta 16377746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 17695446 - 17695353
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | |  |||| || ||||| |||||   |||| ||||| ||||||  ||||||||||||||||||| |||||||||    
T  17695446 ttattaaggaaatgattaattgtattgatttcaatggtaaaattgatatcatttacaaaaatattcttattaattatagttagtagagtagtta 17695353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 42363718 - 42363815
Alignment:
Q  90 tttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagtta 187  Q
    ||||||||||| || || |||||||||||||||| |||  |||| |||||| | ||||| ||| |  ||||||| || |||||||||||||| |||||    
T  42363718 tttgagttttacacagtaattaaggaaatgattagtagtattgattttaatcgtaaaatgtgtttaatttactataacacccttattaattaaagtta 42363815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 207
Target Start/End: Complemental strand, 9294571 - 9294466
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtat---cgtttactaaaatacccttattaattatagttagtggagtagttata 201  Q
    |||||||| ||||| |||| ||| ||||| |||||||  |||||||||||   | |||||||||||| |  ||||||||| | ||| ||||||| |||||    
T  9294571 gttattaaagaaataattaatagggttgattttaatgataaaatatgtattatcatttactaaaataactatattaattacatttattggagtatttata 9294472  T
Q  202 gatgat 207  Q
    ||||||    
T  9294471 gatgat 9294466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 12498083 - 12498130
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagttatagat 204  Q
    ||||||||||||   ||||||||||||||| |||||||||||||||||    
T  12498083 tttactaaaatattattattaattatagtttgtggagtagttatagat 12498130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 39691606 - 39691515
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagt 197  Q
    |||||||| ||||||||| | | ||||| || ||||  |||||   |||| ||||||||||||| ||||||||||  |||||||||||||||    
T  39691606 ttattaagaaaatgattaattgtgttgatttcaatgataaaattaatatcatttactaaaatactcttattaattgcagttagtggagtagt 39691515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 39785705 - 39785608
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatg---tatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||||||| | | ||||| ||| |||| |||||  |   |||| |||||||||| || |||||||||| |||||| |||||||||||    
T  39785705 gttattaaggaaatgattaattgtgttgattttgatggtaaaattagtactatcatttactaaaacactcttattaattgtagttaatggagtagtta 39785608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 43410496 - 43410449
Alignment:
Q  152 tatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| |||||||||||| ||||||||||| |||||| |||||||||||    
T  43410496 tatcatttactaaaatatccttattaattgtagttaatggagtagtta 43410449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 43115850 - 43115892
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||    
T  43115850 tttactaaaatactcttatttattgtagttagtggagtagtta 43115892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 25637593 - 25637504
Alignment:
Q  110 taaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||| | | ||||| ||| |||| |||||  || || |||||||||| ||| ||||||||| ||||||  ||||||||||    
T  25637593 taaggaaatgattaattgtgttgattttgatggtaaaattagtgtcatttactaaaacacctttattaattgtagttataggagtagtta 25637504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 35314003 - 35313910
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  |||   |||| ||||  | ||||||||||| ||||||||||||||||||    
T  35314003 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagtatttattaaagcaaccttattaattgtagttagtggagtagtta 35313910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 36354440 - 36354533
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||| || | | ||||| ||| |||| |||||  ||||  |||| | ||| || |||||||||| ||||||||||||||||||    
T  36354440 ttattaaggaaatgactagttgtgttgattttgatggtaaaattagtattatttattgaaacactcttattaattgtagttagtggagtagtta 36354533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 45235697 - 45235616
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagtta 187  Q
    |||||||||||||||||  | | ||||| || ||||| |||||   |||| |||||||||| ||||||||||||| ||||||    
T  45235697 ttattaaggaaatgattgattgtgttgatttcaatggtaaaattaatatcatttactaaaacacccttattaattgtagtta 45235616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 30832096 - 30832160
Alignment:
Q  88 catttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgt 152  Q
    ||||||||||||| ||  |||| ||| |||| |||| ||| ||||| ||||||||||||||||||    
T  30832096 catttgagttttacacgattataaagaaaataattaatagtgttgattttaatggcaaaatatgt 30832160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 30996440 - 30996376
Alignment:
Q  135 tttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||| | |  ||||| |||| || ||||||||||||||||| |||||||||||    
T  30996440 tttaatggtaaaatatatttaatttacaaaaacactcttattaattatagttactggagtagtta 30996376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 44122378 - 44122248
Alignment:
Q  59 atacaccctcagtctcacattaggcaacccatttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatc--g 156  Q
    |||| ||||| |||||| ||||||   |||||||||| |||| || |||| ||| |||||||||| ||| ||||| |||||||| ||||||||||||       
T  44122378 atactccctccgtctcatattaggtgtcccatttgagatttacacagttactaaagaaatgattaatagtgttgattttaatggaaaaatatgtatcata 44122279  T
Q  157 tttactaaaatacccttattaattatagtta 187  Q
    |||||||||| ||||||||||||||||||||    
T  44122278 tttactaaaacacccttattaattatagtta 44122248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 49177047 - 49176936
Alignment:
Q  92 tgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtgg 191  Q
    |||||||||||| | |||||||||||| |||| ||  ||||| || || || ||||||||| || ||||||||||||| ||||||||||||||||| | |    
T  49177047 tgagttttatacgggtattaaggaaataattaataatgttgatttcaaaggtaaaatatgtgtcatttactaaaatactcttattaattatagttaatag 49176948  T
Q  192 agtagttataga 203  Q
    ||||||||||||    
T  49176947 agtagttataga 49176936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 15444465 - 15444543
Alignment:
Q  88 catttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaa 166  Q
    |||||||||||||||  ||||||||||||||||||| ||| ||||| |||||||| |||||||||||  ||||||||||    
T  15444465 catttgagttttatatggttattaaggaaatgattaatagtgttgattttaatggtaaaatatgtattatttactaaaa 15444543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 37276577 - 37276484
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||||||   | ||||| ||| |||| |||||  |||||||||||||||| ||||||||||||| ||||||||||| ||||||    
T  37276577 ttattaaggaaatgattaactgtgttgattttgatggtaaaattagtatcgtttactaaaacacccttattaattgtagttagtggaatagtta 37276484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 39864227 - 39864134
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  ||| | ||||||||||||| |||||||||| ||||||||||||||||||    
T  39864227 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaatactcttattaattgtagttagtggagtagtta 39864134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 49223987 - 49224081
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| |||| ||||||||| | | ||||| ||| |||| |||||  ||||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  49223987 gttactaagaaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagttagtggagtagtta 49224081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 40144848 - 40144942
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||| ||||||||| | | ||||| ||| |||| |||||   |||| |||||||||| ||||||||||||| |||||| |||||||||||    
T  40144848 gttattaagaaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagttaatggagtagtta 40144942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 41121833 - 41121919
Alignment:
Q  112 aggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtt 198  Q
    |||||||||||| | | ||||| ||| |||| |||||  | ||  |||||||||||||||||||||||| |||||||||||||||||    
T  41121833 aggaaatgattaattgtgttgattttgatggtaaaattagcataatttactaaaatacccttattaattgtagttagtggagtagtt 41121919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 20209838 - 20209935
Alignment:
Q  102 accgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||| ||||||||| |   ||||| ||| || | |||||  ||||| |||||||||| | ||||||||||| ||||||||||||||||||    
T  20209838 accgttattaagaaaatgattaattatgttgattttgatagtaaaattagtatcatttactaaaacatccttattaattgtagttagtggagtagtta 20209935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 30754943 - 30755036
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| ||||| || ||||| | |||  |||||||||||| | ||||||||||||||||||| | ||||||    
T  30754943 ttattaaggaaatgattaattgtgttgattttaagggtaaaatttatattatttactaaaatatcattattaattatagttagtgaaatagtta 30755036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 15699229 - 15699145
Alignment:
Q  115 aaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||| | | ||||| ||| |||| |||||   |||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  15699229 aaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagttagtggagtagtta 15699145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 36702034 - 36701951
Alignment:
Q  109 ttaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtgga 192  Q
    ||||||||||||||| |   ||||| || ||||| |||||  ||||| ||||||||||| |||||||||||| |||||||||||    
T  36702034 ttaaggaaatgattaattatgttgatttcaatggtaaaattagtatcatttactaaaatgcccttattaattgtagttagtgga 36701951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 36718138 - 36718055
Alignment:
Q  109 ttaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtgga 192  Q
    ||||||||||||||| |   ||||| || ||||| |||||  ||||| ||||||||||| |||||||||||| |||||||||||    
T  36718138 ttaaggaaatgattaattatgttgatttcaatggtaaaattagtatcatttactaaaatgcccttattaattgtagttagtgga 36718055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 22856290 - 22856332
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  22856290 tttactaaaataccctaattaattgtagttagtggagtagtta 22856332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 35367867 - 35367825
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| ||||||||||||| ||||||||||||||||||    
T  35367867 tttactaaaacacccttattaattgtagttagtggagtagtta 35367825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 52429409 - 52429367
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| ||||||||||||||||||| ||||||||||||||||||    
T  52429409 tttattaaaatacccttattaattgtagttagtggagtagtta 52429367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 16395049 - 16395141
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||| | | ||||| ||| || | |||||  ||||| |||||||||||||| || |||||| ||||||||||||||||||    
T  16395049 ttattaagaaaatgattaattgtgttgattttgatagtaaaattagtatcatttactaaaataccttt-ttaattgtagttagtggagtagtta 16395141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 21910008 - 21910100
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| ||| |||| |||||  ||||||||| |||||| | ||||||||| ||||||| | ||||||||||    
T  21910008 ttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcgtttgctaaaaca-ccttattaactatagtttgaggagtagtta 21910100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 31042913 - 31042824
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagta 195  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  ||||| ||||||  |||||||||||||||| ||| ||||| ||||    
T  31042913 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtatcatttactgtaatacccttattaattgtaggtagtgaagta 31042824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 38787457 - 38787364
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||  | | ||||| ||| |||| ||||   ||||| ||| | |||| | ||||||||||||||||||||||||||||||    
T  38787457 ttattaaggaaatgattgattgtgttgattttgatggtaaaactagtatcatttgccaaaacatccttattaattatagttagtggagtagtta 38787364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 7957290 - 7957373
Alignment:
Q  115 aaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||| | ||||| ||||| || ||||||||| |  |||||||||||| ||||| |||||||| ||| |||||||||||    
T  7957290 aaatgattatttgtgttgattttaaaggtaaaatatgtttaatttactaaaata-ccttactaattataattaatggagtagtta 7957373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 32825993 - 32826080
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggag 193  Q
    ||||||||||||||||||| | | ||||| ||| |||| |||||  ||||| |||||||||| ||| ||||||||| || |||||||||    
T  32825993 gttattaaggaaatgattaat-gtgttgattttgatggtaaaattagtatcatttactaaaacacctttattaattgtaattagtggag 32826080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 34031529 - 34031613
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtg 190  Q
    |||||||||||||||||| | | ||||| |  ||||| |||||   |||| |||||||||||||| ||||||||| |||||||||    
T  34031529 ttattaaggaaatgattacttgtgttgattccaatggtaaaattaatatcatttactaaaataccgttattaattgtagttagtg 34031613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 917094 - 917047
Alignment:
Q  152 tatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| |||||||||||||||||||||||| |||||||| || ||||||    
T  917094 tatcatttactaaaatacccttattaattgtagttagtagattagtta 917047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 7759285 - 7759238
Alignment:
Q  152 tatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| ||||||||||||| |||||||||| ||||||||||| ||||||    
T  7759285 tatcatttactaaaatactcttattaattgtagttagtggaatagtta 7759238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 13366002 - 13366041
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtag 196  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  13366002 tttactaaaatacccttattaatagtagttagtggagtag 13366041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 24880946 - 24880899
Alignment:
Q  152 tatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| |||||||||||||  ||||||||| ||||||||||||||||||    
T  24880946 tatcatttactaaaatacttttattaattgtagttagtggagtagtta 24880899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 28749107 - 28749024
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagt 189  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  ||| | |||||||||| ||||||||||||| || |||||    
T  28749107 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtaattagt 28749024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 6023702 - 6023744
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||| ||||||||| |||||| |||||||||||    
T  6023702 tttactaaaatacctttattaattgtagttattggagtagtta 6023744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 9307692 - 9307650
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| |||||| |||||| ||||||||||||||||||    
T  9307692 tttactaaaacacccttgttaattgtagttagtggagtagtta 9307650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 31092311 - 31092237
Alignment:
Q  130 ttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagat 204  Q
    |||| ||||||| |||||| |||||| |||||||||| ||| | |||||||||  |||||| | |||||||||||    
T  31092311 ttgattttaatgacaaaatgtgtatcatttactaaaacaccatgattaattatgattagtgtaatagttatagat 31092237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 12039198 - 12039109
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagta 195  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  ||| | |||||||| | || |||||||||| |||||| |||||||    
T  12039198 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtaacatttactaatacactcttattaattgtagttaatggagta 12039109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 26093510 - 26093421
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagta 195  Q
    |||||||| ||||||||| | | ||||| || ||||| |||||   |||| |||| ||||||| ||||||||||| ||||||||| ||||    
T  26093510 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattaatatcatttattaaaatatccttattaattgtagttagtgaagta 26093421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 33733265 - 33733357
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||||| | ||||| || ||||| |||||   || | |||||||||||||  ||||||||| |||||||| |||| ||||    
T  33733265 ttattaaggaaatgattatt-gtgttgatttcaatggtaaaattattaacatttactaaaatacttttattaattgtagttagtagagtggtta 33733357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 44761579 - 44761619
Alignment:
Q  152 tatcgtttactaaaatacccttattaattatagttagtgga 192  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  44761579 tatcatttactaaaatatctttattaattatagttagtgga 44761619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 52837343 - 52837303
Alignment:
Q  159 tactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||| |||||||||| ||| ||||||||||||||    
T  52837343 tactaaaatactcttattaattgtagctagtggagtagtta 52837303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 12605442 - 12605556
Alignment:
Q  87 ccatttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagtt 186  Q
    ||||||||||||||||| ||||||||  ||||||||| ||   |||| |||||||||||||| | |||| |||| ||||| ||| ||||||||| |||||    
T  12605442 ccatttgagttttatacggttattaacaaaatgattaataagattgattttaatggcaaaatttatatcatttattaaaacacctttattaattttagtt 12605541  T
Q  187 agtggagtagttata 201  Q
    ||| |||||||||||    
T  12605542 agtagagtagttata 12605556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 26592455 - 26592337
Alignment:
Q  89 atttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttag 188  Q
    ||||||||||||  |  |||||||||||||||||| ||   |||| |||||||| ||||| |||||| |||||||| |||||||| || |||||||||||    
T  26592455 atttgagttttaggcaattattaaggaaatgattaataatattgattttaatggtaaaatgtgtatcatttactaatatacccttgtttattatagttag 26592356  T
Q  189 tggagtagttatagatgat 207  Q
    || | || |||||||||||    
T  26592355 tgaaataattatagatgat 26592337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 24983450 - 24983540
Alignment:
Q  109 ttaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||| | | ||||| || ||||| |||||  || || |||||||||| ||||||||||||| ||||||||||||||||||    
T  24983450 ttaaggaaatgattagttgagttgatttcaatggtaaaattagtgtcatttactaaaacacccttattaattgtagttagtggagtagtta 24983540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 21018875 - 21018774
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagatg 205  Q
    |||||||||||||||||| ||   |||| |||||||  |||||||||||  |||||||||| ||| |||||| ||||||||| |||| || |||||||||    
T  21018875 ttattaaggaaatgattactactattgattttaatgataaaatatgtattatttactaaaacaccattattagttatagttaatggaataattatagatg 21018776  T
Q  206 at 207  Q
    ||    
T  21018775 at 21018774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 11655943 - 11656035
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagt 197  Q
    ||||||||| ||||||||| | | ||||| ||| |||| |||||  || || |||||||||| ||||||||||||| ||||||||||||||||    
T  11655943 gttattaagaaaatgattaattgtgttgattttgatggtaaaattagtgtcatttactaaaacacccttattaattgtagttagtggagtagt 11656035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 30717017 - 30716925
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagt 197  Q
    ||||||||||||||||||| |    |||||||| |||| |||||  ||||| |||||| ||| ||||||||||||| ||||||||||||||||    
T  30717017 gttattaaggaaatgattaattttattgactttgatggtaaaattagtatcatttacttaaacacccttattaattgtagttagtggagtagt 30716925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 30658887 - 30659031
Alignment:
Q  59 atacaccctcagtctcacattaggcaacccatttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtt 158  Q
    |||| ||||| |||||||| |||||  |  |||||||||||| || ||||||||| ||||||| ||    |||||  |||||| |||||||||||||  |    
T  30658887 atactccctccgtctcacagtaggcgtcttatttgagttttacacagttattaagcaaatgataat----gttgatgttaatgacaaaatatgtatcaat 30658982  T
Q  159 tactaaaatacccttattaattatagttagtggagtagttatagatgat 207  Q
    |||||||| |   |||||||||||||||||||  ||||||| |||||||    
T  30658983 tactaaaacattgttattaattatagttagtgaggtagttagagatgat 30659031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 12340091 - 12339983
Alignment:
Q  90 tttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagt 189  Q
    ||||||||||| ||  |||||||| ||||||||| ||| ||||| |||||||  ||| ||||| |  |||||||||| ||  |||||||||||||||||     
T  12340091 tttgagttttacacgattattaagaaaatgattagtagtgttgattttaatgataaa-tatgtttaatttactaaaacacttttattaattatagttagc 12339993  T
Q  190 ggagtagtta 199  Q
    ||||||||||    
T  12339992 ggagtagtta 12339983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 13909540 - 13909451
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagta 195  Q
    ||||||||||||||||||   | ||||| || ||||| |||||  ||  | |||||||||||||||||||||||| ||||||||||||||    
T  13909540 ttattaaggaaatgattaaatgtgttgatttcaatggtaaaattagtgacatttactaaaatacccttattaattgtagttagtggagta 13909451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 34436204 - 34436310
Alignment:
Q  90 tttgagttttataccgttattaaggaaatgattattagc---gttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagtt 186  Q
    ||||||||||| ||  |||||||| |||| ||||||||    ||||| |||||| | ||||||| | || ||||||||||||| ||||||||||||||||    
T  34436204 tttgagttttacacgattattaagtaaataattattagtagtgttgattttaattgtaaaatatatgtcatttactaaaatactcttattaattatagtt 34436303  T
Q  187 agtggag 193  Q
    | |||||    
T  34436304 aatggag 34436310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 6802048 - 6801954
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||| ||||||||| |   ||||| ||| |||| |||||   |||| ||||||||||  |||||||||||| ||||||||||||||||||    
T  6802048 gttattaagaaaatgattaattatgttgattttgatggtaaaattaatatcatttactaaaacgcccttattaattgtagttagtggagtagtta 6801954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 8115081 - 8115131
Alignment:
Q  151 gtatcgtttactaaaatacccttattaattatagttagtggagtagttata 201  Q
    ||||| ||||||||||||| |||||||||| ||||||||||| ||||||||    
T  8115081 gtatcatttactaaaatactcttattaattttagttagtggattagttata 8115131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 32440642 - 32440736
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||| |||||||||||| | | ||||| ||| |||| |||||  ||||  |||||||||| ||||||||||||| || ||||| |||||||||    
T  32440642 gttatttaggaaatgattaattgtgttgattttgatggtaaaattagtattatttactaaaacacccttattaattgtaattagtagagtagtta 32440736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 3291766 - 3291859
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | |  | || |||||||| || ||  ||||  |||||||||||||| ||||||||| ||||||||| ||||||||    
T  3291766 ttattaaggaaatgattaattgtatcgattttaatggtaatattagtattatttactaaaatacctttattaattgtagttagtgaagtagtta 3291859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 11143630 - 11143678
Alignment:
Q  151 gtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| |||||||||  ||||||||||||||||||||||| ||||||||    
T  11143630 gtatcatttactaaatcacccttattaattatagttagtgaagtagtta 11143678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 17398876 - 17398974
Alignment:
Q  89 atttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttag 188  Q
    |||||||||||| ||  ||||||| ||||| |||| ||| || || |||||||  ||||||||| || ||||||||||   |||||||||||||||||||    
T  17398876 atttgagttttacactattattaaagaaattattaatagtgt-gattttaatgataaaatatgtttcatttactaaaaacgccttattaattatagttag 17398974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 181621 - 181579
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| | | ||||||||||||||||||||||||||||    
T  181621 tttactaaaacatcattattaattatagttagtggagtagtta 181579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 15058182 - 15058144
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagta 195  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  15058182 tttactaaaatacccttattaattgtagttagtgaagta 15058144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 21477968 - 21478017
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagttatagatgat 207  Q
    |||||||||||||  ||||||||||||||||||||| || |||||||||||    
T  21477968 tttactaaaataca-ttattaattatagttagtggaatacttatagatgat 21478017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 23142732 - 23142690
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||    
T  23142732 tttactaaaacacccttattaattgtaggtagtggagtagtta 23142690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 1781867 - 1781830
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagt 194  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  1781867 tttactaaaacacccttattaattgtagttagtggagt 1781830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 2423734 - 2423633
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagatg 205  Q
    ||||| || ||||||||| ||  ||||| |||||||| |||||||||||| |||| ||||| || |||||||| |||  ||  |||| |||||| |||||    
T  2423734 ttattcagaaaatgattaatattgttgattttaatggtaaaatatgtatcatttattaaaacactcttattaactatgatttttggaatagttacagatg 2423635  T
Q  206 at 207  Q
    ||    
T  2423634 at 2423633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 13087646 - 13087557
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagta 195  Q
    |||||||| || |||||| | | ||||| || ||||| |||||   |||| |||||||||| | ||||||||||||||||||||| ||||    
T  13087646 ttattaagaaagtgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaacatccttattaattatagttagtgaagta 13087557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 29363422 - 29363329
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||| | | ||||| ||| |||| ||||   ||||| |||||||||| | ||||||||||| ||||||| ||| ||||||    
T  29363422 ttattaagaaaatgattaattgtgttgattttgatggtaaaactagtatcatttactaaaacatccttattaattgtagttagcggattagtta 29363329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 6245957 - 6246001
Alignment:
Q  151 gtatcgtttactaaaatacccttattaattatagttagtggagta 195  Q
    ||||| |||||||||||| | ||||||||||||||| ||||||||    
T  6245957 gtatcatttactaaaatatcattattaattatagtttgtggagta 6246001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 126287 - 126186
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagatg 205  Q
    |||||||||||||||||| ||| ||| | ||||||| |||||| |||||| |||||||||| ||  || |||||||||||||||| | ||||||||||||    
T  126287 ttattaaggaaatgattaatagtgtttattttaatgacaaaatgtgtatcatttactaaaagactgttgttaattatagttagtgaaatagttatagatg 126188  T
Q  206 at 207  Q
    ||    
T  126187 at 126186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 7930192 - 7930083
Alignment:
Q  90 tttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagt 189  Q
    |||| |||||| || ||||||||| ||||||||| ||| ||||| || ||||| ||||||||  || |||||||||| ||||||||||||||||||||||    
T  7930192 tttgggttttacacggttattaagaaaatgattagtagtgttgatttcaatggaaaaatatggttcatttactaaaacacccttattaattatagttagt 7930093  T
Q  190 ggagtagtta 199  Q
    | | ||||||    
T  7930092 gaaatagtta 7930083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 29121641 - 29121533
Alignment:
Q  91 ttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtg 190  Q
    |||||||||| || |||| |||||||||||| | ||  ||||| |||||||| ||||||||| |  |||||||||| ||||| ||||||||| |||||||    
T  29121641 ttgagttttacacggttactaaggaaatgatcaatattgttgattttaatggtaaaatatgtctaatttactaaaacaccctcattaattattgttagtg 29121542  T
Q  191 gagtagtta 199  Q
    |||||||||    
T  29121541 gagtagtta 29121533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 207
Target Start/End: Original strand, 17783079 - 17783198
Alignment:
Q  88 catttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagtta 187  Q
    ||||||||||||| || | |||||| || ||||||| |||  ||||  ||||| | ||||||||| | ||||||||||| | | ||||||||||||||||    
T  17783079 catttgagttttacacgggtattaaagagatgattaatagttttgatcttaatagtaaaatatgtgttgtttactaaaacatctttattaattatagtta 17783178  T
Q  188 gtggagtagttatagatgat 207  Q
    |||||||||| |||||||||    
T  17783179 gtggagtagtcatagatgat 17783198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 197
Target Start/End: Complemental strand, 14063481 - 14063348
Alignment:
Q  64 ccctcagtctcacattaggcaacccatttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttacta 163  Q
    ||||| |||||||| ||||   ||| ||||||||||| ||   ||||||||||||||||| ||  ||||| |||||||| ||||||||| |  |||||||    
T  14063481 ccctccgtctcacaataggtgccccttttgagttttacacgactattaaggaaatgattagtaatgttgattttaatggtaaaatatgtttaatttacta 14063382  T
Q  164 aaatacccttattaattatagttagtggagtagt 197  Q
    ||  ||||| |||| |||||||||||||||||||    
T  14063381 aaccaccctcattagttatagttagtggagtagt 14063348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 197
Target Start/End: Complemental strand, 14373509 - 14373376
Alignment:
Q  64 ccctcagtctcacattaggcaacccatttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttacta 163  Q
    ||||| |||||||| ||||   ||| ||||||||||| ||   ||||||||||||||||| ||  ||||| |||||||| ||||||||| |  |||||||    
T  14373509 ccctccgtctcacaataggtgccccttttgagttttacacgactattaaggaaatgattagtaatgttgattttaatggtaaaatatgtttaatttacta 14373410  T
Q  164 aaatacccttattaattatagttagtggagtagt 197  Q
    ||  ||||| |||| |||||||||||||||||||    
T  14373409 aaccaccctcattagttatagttagtggagtagt 14373376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 34947623 - 34947530
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||| |||||||||| | | ||||| || ||||| |||||   |||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  34947623 ttattaaagaaatgattaattgtgttgatttcaatggtaaaattattatcatttactaaaacacccttattaattgtagttagtggagtagtta 34947530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 41506071 - 41506164
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||| | |||||||| |||||  ||| | |||||||||| || |||||||||| ||||||||||||||||||    
T  41506071 ttattaaggaaatgattaattgtgttaattttaatggtaaaattagtagcatttactaaaacactcttattaattgtagttagtggagtagtta 41506164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 7463337 - 7463243
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||||||| | | ||||| || ||||  |||||  ||| | |||||| ||||||||| ||||||| ||||||||||||||||||    
T  7463337 gttattaaggaaatgattaattgtgttgatttcaatgataaaattagtagcatttacttaaataccctcattaattgtagttagtggagtagtta 7463243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 15464790 - 15464700
Alignment:
Q  117 atgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagatgat 207  Q
    ||||||| ||| ||||| |||||||| ||||| |||||| ||||||||| ||| ||| ||||||||||||| |  | ||||||||||||||    
T  15464790 atgattaatagtgttgattttaatggtaaaatgtgtatcatttactaaagtactcttgttaattatagttaataaaatagttatagatgat 15464700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 43874047 - 43873953
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| |||||||||| | | ||||| ||| |||| |||||   |||| |||||||||| ||||||||||| | ||||||||||||||||||    
T  43874047 gttattaaagaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaaatgtagttagtggagtagtta 43873953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 83508 - 83415
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| ||| |||| |||||  ||||| |||||||||| |  |||||||||| ||||||| ||||||||||    
T  83508 ttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacattcttattaattgtagttagcggagtagtta 83415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 759097 - 759190
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| ||| |||| ||||   ||||| |||||||||| | ||||||||||| ||||||| ||||||||||    
T  759097 ttattaaggaaatgattaattgtgttgattttgatggtaaaactagtatcatttactaaaacatccttattaattgtagttagcggagtagtta 759190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 11373434 - 11373527
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||| ||| | | ||||| ||  |||| |||||  ||| | |||||||||| ||||||||||||| ||||||||||||||||||    
T  11373434 ttattaaggaaatgtttaattgtgttgatttcgatggtaaaattagtagcatttactaaaacacccttattaattgtagttagtggagtagtta 11373527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 25530979 - 25531072
Alignment:
Q  89 atttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattat 182  Q
    |||||||||||| ||  ||| |||  ||||||||| ||| ||||| |||||||||||||| || ||| |||||||||| || ||||||||||||    
T  25530979 atttgagttttacacgattactaaaaaaatgattaatagtgttgattttaatggcaaaatgtgcatcatttactaaaacactcttattaattat 25531072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 26974152 - 26974056
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaat--atgt-atcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  || | ||| ||||||||||||| |||||||||| ||||||||||||||||||    
T  26974152 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattaatatcatcatttactaaaatactcttattaattgtagttagtggagtagtta 26974056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 27556975 - 27557048
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaat 179  Q
    |||||||||||||||||| |   ||||| |||||||||||||| |||||| |||||||||| || |||||||||    
T  27556975 ttattaaggaaatgattactgatgttgattttaatggcaaaatgtgtatcatttactaaaacactcttattaat 27557048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 42935785 - 42935697
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggag 193  Q
    ||||||||| ||||||||| | | ||||| ||| |||| |||||   |||| |||||||||| ||||||||||||| ||||||||||||    
T  42935785 gttattaagaaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagttagtggag 42935697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 7348141 - 7348252
Alignment:
Q  89 atttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttag 188  Q
    |||||||||||  || ||||| ||  |||| |||| |||  |||| ||||||| ||||||||||||| || | ||||| || |||||||||||||||||     
T  7348141 atttgagttttgcacggttatgaaaaaaatcattaatagttttgattttaatgacaaaatatgtatcattaattaaaacactcttattaattatagttac 7348240  T
Q  189 tggagtagttat 200  Q
    || |||||||||    
T  7348241 tgaagtagttat 7348252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 30866044 - 30865997
Alignment:
Q  152 tatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||||||    
T  30866044 tatcatttactaaaatactcttattaattataattagtggagtagtta 30865997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 21350682 - 21350724
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| ||||||||||||| ||||||||||||||||||    
T  21350682 tttactaaaacacccttattaattgtagttagtggagtagtta 21350724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 32346057 - 32346151
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||| |||  | | ||||| || ||||| |||||   |||| | ||||||||||| ||||||||||||| |||||||||||||||    
T  32346057 gttattaaggaaataattgattgtgttgatttcaatggtaaaattaatatcatctactaaaatactcttattaattataattagtggagtagtta 32346151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 3178210 - 3178303
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||  | | ||||| ||| |||| |||||   |||| |||||||||| ||| ||||||||| ||||||||||||||||||    
T  3178210 ttattaagtaaatgattgattgtgttgattttgatggtaaaattaatatcatttactaaaacacctttattaattgtagttagtggagtagtta 3178303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 9786111 - 9786018
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| ||| |||| |||||   | || |||||||||| || |||||||||| ||||||||| ||||||||    
T  9786111 ttattaaggaaatgattaattgtgttgattttgatggtaaaattaatttcatttactaaaacacgcttattaattgtagttagtgaagtagtta 9786018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 13962082 - 13961989
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| |||||||  |||||   ||||  ||| ||||||| ||||||||| | ||||||||||||||||||    
T  13962082 ttattaaggaaatgattaattgtgttgattttaatgataaaattaatatcacttaataaaatatccttattaagtgtagttagtggagtagtta 13961989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 16560576 - 16560669
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||| | ||| |||| ||||   ||||| |||||||||| | ||||||||||| |||||||||| |||||||    
T  16560576 ttattaaggaaatgattaattgtgtttattttgatggtaaaactagtatcatttactaaaacatccttattaattgtagttagtggggtagtta 16560669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 16605086 - 16604993
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||| | ||| |||| ||||   ||||| |||||||||| | ||||||||||| |||||||||| |||||||    
T  16605086 ttattaaggaaatgattaattgtgtttattttgatggtaaaactagtatcatttactaaaacatccttattaattgtagttagtggggtagtta 16604993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 21759990 - 21760083
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||| | | ||||| ||| |||| |||||  ||||| |||| ||||| ||||||| ||||| |||||| |||||||||||    
T  21759990 ttattaagaaaatgattaattgtgttgattttgatggtaaaattagtatcatttaataaaacacccttactaattgtagttaatggagtagtta 21760083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 24516295 - 24516388
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||  ||||||||| | | ||||| || ||||| |||||  ||| | |||||||||| | ||||||||||| ||||||||||||||||||    
T  24516295 ttattaataaaatgattaattgtgttgatttcaatggtaaaattagtaacatttactaaaaaaaccttattaattgtagttagtggagtagtta 24516388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 47255015 - 47254938
Alignment:
Q  130 ttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagatgat 207  Q
    ||||||| | ||| ||||||| | || |||||||||| || ||||||||||||||||| | ||||| |||||||||||    
T  47255015 ttgacttcattggtaaaatatatttcatttactaaaacactcttattaattatagttaatagagtatttatagatgat 47254938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 25571497 - 25571449
Alignment:
Q  151 gtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| ||||||||||||||||||||| || ||||||||||| ||||||    
T  25571497 gtatcatttactaaaatacccttattagttgtagttagtggaatagtta 25571449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 2459543 - 2459501
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||| || ||||||||||||| ||||||||||||||||||    
T  2459543 tttactacaacacccttattaattgtagttagtggagtagtta 2459501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 24167063 - 24167021
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||||||||  ||||||||| ||||||||    
T  24167063 tttactaaaatacccttattaatagtagttagtgcagtagtta 24167021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 38391871 - 38391785
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtgga 192  Q
    |||||||| ||||||||| | | ||||| ||| |||| |||||  ||||| |||||||||| || ||| |||||| |||||||||||    
T  38391871 ttattaagaaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacactcttgttaattgtagttagtgga 38391785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 46478350 - 46478392
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||||||||| |||||| | |||||||||    
T  46478350 tttactaaaatacccttattaattgtagttaattgagtagtta 46478392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 2850938 - 2850971
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtg 190  Q
    |||||||||||||||| |||||||||||||||||    
T  2850938 tttactaaaataccctcattaattatagttagtg 2850971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 5524503 - 5524410
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||| | | ||||| || ||||| |||||  ||| | |||| ||||| ||  |||||||||||||||||| |||||||||    
T  5524503 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattagtaacatttaataaaacacttttattaattatagttagttgagtagtta 5524410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 22738824 - 22738731
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||| |||||||||| | | || || || ||||| |||||  ||||| |||||||||||| ||| ||||||| |||||||| || ||||||    
T  22738824 ttattaaagaaatgattaattgtgtagatttcaatggtaaaattagtatcatttactaaaatatcctcattaattgtagttagtagattagtta 22738731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 31930559 - 31930592
Alignment:
Q  162 taaaatacccttattaattatagttagtggagta 195  Q
    ||||||||||||||||||| ||||||||||||||    
T  31930559 taaaatacccttattaattgtagttagtggagta 31930592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 42796080 - 42796039
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtt 198  Q
    |||| ||||| ||||||||||||| |||||||||||||||||    
T  42796080 tttattaaaacacccttattaattgtagttagtggagtagtt 42796039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 8592497 - 8592537
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagt 197  Q
    |||| ||||| ||||||||||||| ||||||||||||||||    
T  8592497 tttaataaaacacccttattaattgtagttagtggagtagt 8592537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 25531092 - 25531164
Alignment:
Q  135 tttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagatgat 207  Q
    |||||||| ||||| || ||| |||||||||| || ||||||||||||  | | |||| ||||||||||||||    
T  25531092 tttaatggaaaaatgtgcatcatttactaaaacactcttattaattatgatcattggaatagttatagatgat 25531164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 28202366 - 28202406
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagt 197  Q
    |||||||||| | ||||||||||| ||||||||||||||||    
T  28202366 tttactaaaacatccttattaattgtagttagtggagtagt 28202406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 36790809 - 36790769
Alignment:
Q  160 actaaaatacccttattaattatagttagtggagtagttat 200  Q
    ||||||| ||||||||||||| |||||||| ||||||||||    
T  36790809 actaaaacacccttattaattgtagttagttgagtagttat 36790769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 3117000 - 3117115
Alignment:
Q  86 cccatttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagt 185  Q
    ||||||||||||||| |  | |||||| |||||||||| ||| ||||| || ||||| ||||| |||  | |||||||||| |||||| |||||||||||    
T  3117000 cccatttgagttttacatgggtattaacgaaatgattaatagtgttgatttcaatggtaaaatgtgt--catttactaaaacacccttgttaattatagt 3117097  T
Q  186 tagtggagtagttataga 203  Q
    || |||||||||||||||    
T  3117098 taatggagtagttataga 3117115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 5878993 - 5879090
Alignment:
Q  110 taaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagatgat 207  Q
    |||||||||||||| ||  ||||| |||||||| |||||||||||| || ||||||| ||  ||||||||||| ||||||||| || |||||||||||    
T  5878993 taaggaaatgattaatattgttgattttaatggtaaaatatgtatcattcactaaaacacatttattaattatggttagtggaataattatagatgat 5879090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 26626112 - 26626203
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagt 197  Q
    |||||||||||||||||| | | ||||| ||| |||| ||||| |||||  |||| ||||||| ||||||||||| ||||||||||||||||    
T  26626112 ttattaaggaaatgattaattgtgttgaatttgatggtaaaatttgtataatttattaaaatatccttattaattgtagttagtggagtagt 26626203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 42972508 - 42972595
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggag 193  Q
    |||||||| ||||||||| | |  |||| || ||||| |||||   ||||||||||||||||||||||||||||||||||||||||||    
T  42972508 ttattaagaaaatgattaattgttttgatttcaatggtaaaattaatatcgtttactaaaatacccttattaattatagttagtggag 42972595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 9300113 - 9300206
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| |||||||| || | ||||| |||||||| |||||   || | |||||||||| ||||||||||||| ||||||||||||||||||    
T  9300113 ttattaagaaaatgattgtttgtgttgattttaatggtaaaattaatagcatttactaaaacacccttattaattttagttagtggagtagtta 9300206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 31271137 - 31271044
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||  | | ||||| |||||||| |||||   |||| | ||||||||||| |||||||||||||||||||||||||||||    
T  31271137 ttattaagaaaatgattgattgtgttgattttaatggtaaaattaatatcatatactaaaatactcttattaattatagttagtggagtagtta 31271044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 44761500 - 44761587
Alignment:
Q  112 aggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||| | | ||||| || ||||| |||||  ||| | |||||||||| ||||||||||||| ||||||||||||||||||    
T  44761500 aggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagttagtggagtagtta 44761587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 11649739 - 11649629
Alignment:
Q  91 ttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtg 190  Q
    |||||||||| || ||||||||  |||| |||| ||| ||||| ||||||   ||||| |||||| |||||||||| ||||||||||||||| |||| ||    
T  11649739 ttgagttttacacggttattaaaaaaataattaatagggttgattttaataataaaatgtgtatcatttactaaaacacccttattaattatggttaatg 11649640  T
Q  191 gagtagttata 201  Q
    || || |||||    
T  11649639 gaataattata 11649629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 17719309 - 17719351
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  17719309 tttactaaaatatccttattaattatagttagtggagtagtta 17719351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 31082684 - 31082642
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  31082684 tttactaaaacacccttattaattatagttagtggagtagtta 31082642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 1875592 - 1875685
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  ||| | |||||||||| ||||||||||||| ||||||||| | ||||||    
T  1875592 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagttagtgaaatagtta 1875685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 21216101 - 21216194
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| || ||||| |||||  ||  | |||||||||| | ||||||||||| ||||||||||||||||||    
T  21216101 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagttgcatttactaaaacatccttattaattgtagttagtggagtagtta 21216194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 135696 - 135768
Alignment:
Q  135 tttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagatgat 207  Q
    |||||||  ||||||||| || ||| |||||| ||  |||||||||||||||||||||||||||||| |||||    
T  135696 tttaatgataaaatatgtgtcatttgctaaaacactattattaattatagttagtggagtagttataaatgat 135768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 10097990 - 10098084
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||| ||||||||| | |  |||| ||| |||| |||||   |||| ||||||| || ||||||||||||| ||||||||||||||||||    
T  10097990 gttattaagaaaatgattaattgtattgattttgatggtaaaattaatatcatttactataacacccttattaattgtagttagtggagtagtta 10098084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 10179998 - 10180040
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  10179998 tttactaaaatacacttattaattgtagttagtggagtagtta 10180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 11976987 - 11977029
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  11976987 tttactaaaatacccttattaattgtagttagtagagtagtta 11977029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 28072123 - 28072181
Alignment:
Q  92 tgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatat 150  Q
    ||||||||| |  ||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  28072123 tgagttttacatggttattaaggaaatgattaatagtgttgattttaatggcaaaatat 28072181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 28073633 - 28073531
Alignment:
Q  64 ccctcagtctcacattaggcaacccatttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttacta 163  Q
    |||||||||||||||||||   | ||||||||||||| |  |||||||||||||| |||| |||  |||| ||||||   |||||||||||  |||||||    
T  28073633 ccctcagtctcacattaggtgtcacatttgagttttacatggttattaaggaaataattaatagttttgattttaattctaaaatatgtataatttacta 28073534  T
Q  164 aaa 166  Q
    |||    
T  28073533 aaa 28073531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 31231847 - 31231753
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||||| | | | || || ||| |||| |||||   |||| |||||| ||| ||||||||||||| ||||||||||||||||||    
T  31231847 gttattaaggaaatgatgaattgtgtcgattttgatggtaaaattaatatcatttactgaaacacccttattaattgtagttagtggagtagtta 31231753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 34393953 - 34394035
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagtta 187  Q
    ||||||||||||||||||| | | ||||| ||| |||| |||||  ||||  |||||||||| ||| ||||||||||||||||    
T  34393953 gttattaaggaaatgattaattgtgttgattttgatggtaaaattagtataatttactaaaacacctttattaattatagtta 34394035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 39482680 - 39482638
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  39482680 tttactaaaacacccttattaattatagttagtggactagtta 39482638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 42887093 - 42887023
Alignment:
Q  129 gttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| || ||| |||||||  ||||| |||||||||||||| ||||||||| |||||||||| |||||||    
T  42887093 gttgatttcaatagcaaaattagtatcatttactaaaatacctttattaattgtagttagtggcgtagtta 42887023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 136884 - 136791
Alignment:
Q  114 gaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagatgat 207  Q
    |||||||||| ||| ||||| ||||||   ||||||| | ||||||||||||  ||  ||||||||||||||||||||| ||  ||||||||||    
T  136884 gaaatgattaatagtgttgattttaataataaaatatttgtcgtttactaaaccacttttattaattatagttagtggaataagtatagatgat 136791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 396609 - 396706
Alignment:
Q  104 cgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttata 201  Q
    |||||||||||||||||||| |   ||||| || || || |||||  ||||| ||||||| |||| ||||||||||| |||||| || ||||||||||    
T  396609 cgttattaaggaaatgattaattatgttgatttcaacggtaaaattagtatcatttactacaatatccttattaattgtagttaatgaagtagttata 396706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 7703156 - 7703233
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattata 183  Q
    ||||||||||||| |||| | | ||||| || ||||| |||||   |||| |||||||||||||||||||||||||||    
T  7703156 ttattaaggaaataattaattgtgttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattata 7703233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 29806265 - 29806374
Alignment:
Q  90 tttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagt 189  Q
    |||||||||| ||  ||||||||||||||||||| ||| ||||| |||| | | ||| | ||| || |||||||||| ||  ||||||| | ||||||||    
T  29806265 tttgagttttgtaaggttattaaggaaatgattagtagtgttgattttatttgaaaagtgtgtttcatttactaaaacacttttattaactgtagttagt 29806364  T
Q  190 ggagtagtta 199  Q
    ||| ||||||    
T  29806365 ggaatagtta 29806374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 32678474 - 32678426
Alignment:
Q  151 gtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| |||||||||| | ||||||||||| ||||||||||||||||||    
T  32678474 gtatcatttactaaaacatccttattaattgtagttagtggagtagtta 32678426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 200
Target Start/End: Original strand, 22771834 - 22771929
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttat 200  Q
    |||||||||||| |||||| | | ||||| ||| |||| |||||  || || |||| ||||| ||||||||||||| ||||||||| |||| ||||    
T  22771834 gttattaaggaattgattaattgggttgattttgatggtaaaattagtgtcatttattaaaacacccttattaattgtagttagtgaagtaattat 22771929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 44225670 - 44225733
Alignment:
Q  86 cccatttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaata 149  Q
    |||||||||||||||||  |||||||| |||||||||| ||  ||||| |||||||| ||||||    
T  44225670 cccatttgagttttatattgttattaacgaaatgattaataatgttgattttaatggtaaaata 44225733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 4428354 - 4428444
Alignment:
Q  109 ttaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||| ||||||||||| | ||||| |||||||  |||||   |||| |||||||||||||  ||||||||| ||||||||| | ||||||    
T  4428354 ttaagaaaatgattatttgtgttgattttaatgataaaattattatcatttactaaaatacaattattaattgtagttagtgaattagtta 4428444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 5053156 - 5053246
Alignment:
Q  109 ttaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||||||||| | | ||||| ||| |||| |||||   |||| |||||||||| |  |||||||||| ||||||| ||||||||||    
T  5053156 ttaaggaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaacagtcttattaattgtagttagcggagtagtta 5053246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 6323288 - 6323420
Alignment:
Q  59 atacaccctcagtctcacattaggcaacccatttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtt 158  Q
    |||| ||||| ||||||||| |||   | ||||||||||||| ||  |||||||  ||||||||| ||   |||| |||||||  ||| |||||||| ||    
T  6323288 atactccctccgtctcacatcaggtgtcacatttgagttttacacaattattaaaaaaatgattaataattttgattttaatgataaa-tatgtatcatt 6323386  T
Q  159 tactaaaatacccttattaattatagttagtgga 192  Q
    |||||| ||||  |||||||||||| ||||||||    
T  6323387 tactaacatacttttattaattataattagtgga 6323420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 34281190 - 34281094
Alignment:
Q  88 catttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagt 185  Q
    ||||| ||||| | ||||||||||| |||||||||| ||| ||||| |||||||| ||| || || || |||||||||| || | ||| |||||||||    
T  34281190 catttcagtttcacaccgttattaatgaaatgatta-tagtgttgattttaatggtaaagtacgtttcatttactaaaacactcatatcaattatagt 34281094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 34948687 - 34948780
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||||||||||| | | ||||| || ||| | |||||  ||||| |||||  ||| ||  ||||||||| ||||||||||||||||||    
T  34948687 ttattaaggaaatgattaattgtgttgatttaaatagtaaaattagtatcatttacagaaacacatttattaattgtagttagtggagtagtta 34948780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 39405878 - 39405789
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagta 195  Q
    |||||||||||||||||| | | ||| | || ||||  |||||  ||||| ||||||| |||| | |||||||||| |||||||||||||    
T  39405878 ttattaaggaaatgattaattgtgttaatttcaatgataaaattagtatcatttactataatatctttattaattacagttagtggagta 39405789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 2767290 - 2767378
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggag 193  Q
    |||||||||||||| |||| | | ||||| ||| |||| |||||  ||||| |||| ||||| | |||||||| || ||||||||||||    
T  2767290 gttattaaggaaataattaattgtgttgattttgatggtaaaattagtatcatttattaaaacatccttattatttgtagttagtggag 2767378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 7672392 - 7672424
Alignment:
Q  157 tttactaaaatacccttattaattatagttagt 189  Q
    |||||||||||| ||||||||||||||||||||    
T  7672392 tttactaaaatatccttattaattatagttagt 7672424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 27976726 - 27976670
Alignment:
Q  151 gtatcgtttactaaaatacccttattaattatagttagtggagtagttatagatgat 207  Q
    ||||| |||| ||||| | ||||||||||| |||||||| || ||||||||||||||    
T  27976726 gtatcatttagtaaaacagccttattaattgtagttagtagaatagttatagatgat 27976670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 28033995 - 28033939
Alignment:
Q  151 gtatcgtttactaaaatacccttattaattatagttagtggagtagttatagatgat 207  Q
    ||||| |||| ||||| | ||||||||||| |||||||| || ||||||||||||||    
T  28033995 gtatcatttagtaaaacagccttattaattgtagttagtagaatagttatagatgat 28033939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 45034582 - 45034482
Alignment:
Q  107 tattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagttatagatga 206  Q
    |||||| |||||||||| |   ||||| || ||| | ||||||||| |  |||| |||||||   |||||||||||| ||||| ||||||||||||||||    
T  45034582 tattaaagaaatgattaatgttgttgatttcaatagtaaaatatgttttatttattaaaatattattattaattataattagtagagtagttatagatga 45034483  T
Q  207 t 207  Q
    |    
T  45034482 t 45034482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 5506 - 5413
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| |||||||||   | ||||| || ||||| |||||   |||| |||||||||||| ||||||||||| ||||||||||||||||||    
T  5506 ttattaagaaaatgattaactgtgttgaattcaatggtaaaattaatatcatttactaaaatatccttattaattttagttagtggagtagtta 5413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 12114 - 12041
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaat 179  Q
    |||||||||||||||||| |   ||||| |||||||||||||| |||||| |||||||||| || |||||||||    
T  12114 ttattaaggaaatgattactgatgttgattttaatggcaaaatgtgtatcatttactaaaacactcttattaat 12041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 71924 - 71826
Alignment:
Q  90 tttgagttttataccgttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttag 188  Q
    ||||||||||| || || ||||| | |||||||| ||| ||||| |||||| | ||||||||| |  ||||||||||||| | |||||||||| |||||    
T  71924 tttgagttttacacggtaattaaaggaatgattagtagtgttgattttaatagtaaaatatgtttaatttactaaaatactcatattaattattgttag 71826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 136087 - 136129
Alignment:
Q  157 tttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||||| ||||||||||||||||||||||| ||||||||    
T  136087 tttactaaaacacccttattaattatagttagtgaagtagtta 136129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 105800 - 105707
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||| ||||||||| | | ||| | || ||||| |||||   || |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  105800 ttattaagtaaatgattaattgtgtttatttcaatggtaaaattaatagcgtttactaaaacacccttattaattgtagttagtgaagtagtta 105707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 1821 - 1727
Alignment:
Q  105 gttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    ||||||||| ||||||||| |   ||||| ||| |||| |||||  ||||| |||||| ||| |||| |||||||| |||| |||||||||||||    
T  1821 gttattaagaaaatgattaattatgttgattttgatggtaaaattagtatcatttacttaaacacccgtattaattgtagtcagtggagtagtta 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 20352 - 20445
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagtagtta 199  Q
    |||||||  ||||||||| | | ||||| ||| || | |||||  ||||| |||| |||||||||||||||||||  |||||||| ||||||||    
T  20352 ttattaattaaatgattaattgtgttgattttgattgtaaaattagtatcatttagtaaaatacccttattaattgcagttagtgaagtagtta 20445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 50320 - 50231
Alignment:
Q  106 ttattaaggaaatgattattagcgttgactttaatggcaaaatatgtatcgtttactaaaatacccttattaattatagttagtggagta 195  Q
    |||||||||||||||||| | | ||| | || ||||  |||||  ||||| ||||||| |||| | |||||||||| |||||||||||||    
T  50320 ttattaaggaaatgattaattgtgttaatttcaatgataaaattagtatcatttactataatatctttattaattacagttagtggagta 50231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University