View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21075_low_14 (Length: 234)
Name: NF21075_low_14
Description: NF21075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21075_low_14 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 32638082 - 32637863
Alignment:
| Q |
15 |
catggtggttctgttttcttatttttaagtataatattagttttaaatttaatatgtgcatgctacataatattcatggttaacgtgagatcacgtttaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
32638082 |
catggtggttctgttttcttatttttaagtataatattagttttaaatttaatatgtgcatgctacataacattcatggttaatgtgagatcacgtttaa |
32637983 |
T |
|
| Q |
115 |
ctnnnnnnnnnggtccaagcatattagaattagacgtggaagcgacctctctgcacaatctaatttgatctgcactgcagacagcaactatttcactcat |
214 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32637982 |
ctaaaaaaaaaggttcaagcatattagaattagacgtggaagcgacctctctgcacaatctaatttgatctgcactgcagacagcaactatttcactcat |
32637883 |
T |
|
| Q |
215 |
tcaatctgcatagtccctcc |
234 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32637882 |
tcaatctgcatagtccctcc |
32637863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University