View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21075_low_4 (Length: 325)
Name: NF21075_low_4
Description: NF21075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21075_low_4 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 4172068 - 4171744
Alignment:
| Q |
1 |
tttatgaggaagatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaatcctgattataatagattgttcaatgatgc |
100 |
Q |
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| T |
4172068 |
tttatgaggaagatctcaccctctttgctacctctttaggatgtgatttatgggagtttcttaacaaaaatcctgaatataatagattgttcaatgatgc |
4171969 |
T |
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| Q |
101 |
tatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatgga |
200 |
Q |
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| T |
4171968 |
tatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggggttggattcaattgtggatgttggtggtggaaatgga |
4171869 |
T |
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| Q |
201 |
acaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttga |
300 |
Q |
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| T |
4171868 |
acaactggtaagattatttgtgagacatatcctaagttgagatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaatttga |
4171769 |
T |
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| Q |
301 |
catatgttggtggggacatgttcat |
325 |
Q |
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| T |
4171768 |
catatgtcggtggggacatgttcat |
4171744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 4159934 - 4160258
Alignment:
| Q |
1 |
tttatgaggaagatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaatcctgattataatagattgttcaatgatgc |
100 |
Q |
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| T |
4159934 |
tttatgaggaagatctcactctatttgctgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgc |
4160033 |
T |
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| Q |
101 |
tatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatgga |
200 |
Q |
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| T |
4160034 |
tttggctagtgattccaaaatgattaatttggcaatgaaagattgcaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatgga |
4160133 |
T |
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| Q |
201 |
acaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttga |
300 |
Q |
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| T |
4160134 |
acaactggtaagattatttgtgagacatttcctaagttgacttgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaatttga |
4160233 |
T |
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| Q |
301 |
catatgttggtggggacatgttcat |
325 |
Q |
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| T |
4160234 |
catatgttggtggggacatgttcat |
4160258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 4177691 - 4177368
Alignment:
| Q |
1 |
tttatgaggaagatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaatcctgattataatagattgttcaatgatgc |
100 |
Q |
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| T |
4177691 |
tttatgaggaagatcttacactctttggtgttactttagggtctggtttttgggattttcttgataaaaatcctgaatataatagatcatttaatgatgc |
4177592 |
T |
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| Q |
101 |
tatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatgga |
200 |
Q |
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| T |
4177591 |
aatggctagtgattctaaattgataaacttggcattgagagattgtgattttgtgtttgatggattggaatcaattgtggatgttggtggtggaaatgga |
4177492 |
T |
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| Q |
201 |
acaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttga |
300 |
Q |
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| T |
4177491 |
accactggtaaaattatttgtgagacttttcctaagttgaaatgtattgtgtttgataggccacaagttgtagagaacttatctggaagcaataatttga |
4177392 |
T |
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| Q |
301 |
catatgttggtggggacatgttca |
324 |
Q |
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| T |
4177391 |
cttatgttggtggggacatgttca |
4177368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 34343521 - 34343695
Alignment:
| Q |
99 |
gctatggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggagttggattcaattgtggatgttggtggtggaaatg |
198 |
Q |
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| T |
34343521 |
gctatggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtaaggtgtttgaagggattgattctattgtggatgttggtggtggaactg |
34343620 |
T |
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| Q |
199 |
gaacaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttgatcgtccaaaggttgtag |
273 |
Q |
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| T |
34343621 |
gaaccacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgatcttccacaggttgtag |
34343695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 34330989 - 34331071
Alignment:
| Q |
174 |
attgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgagatgtattgtttttga |
256 |
Q |
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| T |
34330989 |
attgtggatgttggtggtggaaatggaacgacggctaaaattatatgtgaggcttttcctaaggtcaaatgtcttgtttttga |
34331071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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