View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21075_low_6 (Length: 289)
Name: NF21075_low_6
Description: NF21075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21075_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 7382951 - 7382683
Alignment:
| Q |
15 |
gtggaaattgctcaaccaagcataacaattatgattattgtgagaaaacaatgatagattctaataattcatttacaaacacaataaagagacaaaatca |
114 |
Q |
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| T |
7382951 |
gtggaaattgctcaaccaagcataacaattatgattattgtgagaaaacaatgatagattctaataattcatttacaaacacaataaagagacaaaatca |
7382852 |
T |
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| Q |
115 |
ttctaatcccacaacaacaacaaaatagaaaatagaaacctggtttgataaaaacacaagcaaaccaagatctaaacaaaatcatgaaagattctaaact |
214 |
Q |
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| T |
7382851 |
ttctaatcccacaacaacaa-aaaatagaagatagaaacctggtttgataaaaacacaagcaaaccaagatctaaacaaaatcatgaaagtttctaaact |
7382753 |
T |
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| Q |
215 |
caaagatgataatcatgaaagaagnnnnnnnntcatataaaagaagaaacctaggaagaatatgccaaaaataac |
289 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7382752 |
caaagatgataatcatgaaaaaa-----aaaatcatataaaagaagaaacctaggaagaatatgccaaaaataac |
7382683 |
T |
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