View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21076_high_1 (Length: 436)
Name: NF21076_high_1
Description: NF21076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21076_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 357
Target Start/End: Original strand, 4903790 - 4904132
Alignment:
| Q |
15 |
ggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4903790 |
ggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagctgttggaat |
4903889 |
T |
|
| Q |
115 |
ctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcg |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4903890 |
ctgttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggattgtttgttgcg |
4903989 |
T |
|
| Q |
215 |
gtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtgtttctctggcttaacagtctgttgcggtgctggttttc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4903990 |
gtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtgtttctctggtttaacagtctgttgcggtgctggttttc |
4904089 |
T |
|
| Q |
315 |
ggttctggtgtaggcagttagcttctaagctgcttctttagga |
357 |
Q |
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| T |
4904090 |
ggttctggtgtaggcagttagcttctaagctgcttctttagga |
4904132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 1557359 - 1557474
Alignment:
| Q |
108 |
ttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtt |
207 |
Q |
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| T |
1557359 |
ttggaatcaattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatccgaagaattgtc |
1557458 |
T |
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| Q |
208 |
tgttgcggtgatgctg |
223 |
Q |
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||||||| ||| |||| |
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| T |
1557459 |
tgttgcgttgaggctg |
1557474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 12123902 - 12123866
Alignment:
| Q |
48 |
atttggaaagcgaggaatgacagaattttcaacaatg |
84 |
Q |
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||||||||||| |||||||||||||||||||| |||| |
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| T |
12123902 |
atttggaaagctaggaatgacagaattttcaataatg |
12123866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 22153767 - 22153441
Alignment:
| Q |
15 |
ggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaat |
114 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||| |
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| T |
22153767 |
ggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaagctgttggaat |
22153668 |
T |
|
| Q |
115 |
ctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcg |
214 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22153667 |
cttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcg |
22153568 |
T |
|
| Q |
215 |
gtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtgtttctctggct-taacagtctgttgcggtgctggtttt |
313 |
Q |
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||||||||||||||||||| |||| ||||||||||| |||||||||||||| || ||||| |||||||||| | ||||||||| ||| |||||||||||| |
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| T |
22153567 |
gtgatgctggcttctttggttgtgcggctgtttggtcgccttctggttgttatgcagtcgcgtttctctggttataacagtctattgtggtgctggtttt |
22153468 |
T |
|
| Q |
314 |
cggttctggtgtaggcagttagcttct |
340 |
Q |
| |
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| ||| ||||||| ||||||||||||| |
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| T |
22153467 |
cagttatggtgtatgcagttagcttct |
22153441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 22209682 - 22209356
Alignment:
| Q |
15 |
ggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaat |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||| |
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| T |
22209682 |
ggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaagctgttggaat |
22209583 |
T |
|
| Q |
115 |
ctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcg |
214 |
Q |
| |
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|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22209582 |
cttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcg |
22209483 |
T |
|
| Q |
215 |
gtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtgtttctctggct-taacagtctgttgcggtgctggtttt |
313 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||| |||||||||||||| || ||||| |||||||||| | ||||||||| ||| |||||||||||| |
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| T |
22209482 |
gtgatgctggcttctttggttgtgcggctgtttggtcgccttctggttgttatgcagtcgcgtttctctggttataacagtctattgtggtgctggtttt |
22209383 |
T |
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| Q |
314 |
cggttctggtgtaggcagttagcttct |
340 |
Q |
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| ||| ||||||| ||||||||||||| |
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| T |
22209382 |
cagttatggtgtatgcagttagcttct |
22209356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 38185318 - 38185265
Alignment:
| Q |
168 |
tgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgc |
221 |
Q |
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||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |
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| T |
38185318 |
tgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcggtgatgc |
38185265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 53562243 - 53562433
Alignment:
| Q |
24 |
atttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaagg |
123 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||| | || || ||||| ||||| | || |||| |
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| T |
53562243 |
atttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttg----cagtcaagg |
53562338 |
T |
|
| Q |
124 |
tgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtga |
218 |
Q |
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| ||||||||||||||| |||||| || || || | |||| |||||| || |||||||| |||||||| ||||| |||||| |||||||| |
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| T |
53562339 |
ttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcggtga |
53562433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 43073787 - 43073753
Alignment:
| Q |
118 |
ttaaggtgttgtcttggaggtggtttttgggtagg |
152 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |
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| T |
43073787 |
ttaaggtgttgtcttggaggtggttgttgggtagg |
43073753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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