View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21076_low_2 (Length: 325)
Name: NF21076_low_2
Description: NF21076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21076_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 35444339 - 35444557
Alignment:
| Q |
18 |
tactcttacataacgcaacgtccgaccaagtcatgctaacgtgaacttttttatgtgatatttaacccgattaataacaatttcattttaaagtcataat |
117 |
Q |
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| T |
35444339 |
tactcttgcataacgcgacgtccgtccgagtcatgctcacgtgaacttttttatgtgatatttaacccgattaataacaatttcattttaaagtcataat |
35444438 |
T |
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| Q |
118 |
gtgaagtaaaacgtgcagctaatccgatcatcatgcgaagtaaaataaagtgcagttaatccactcgaaaaacatataggttggagagcgtataaggtgc |
217 |
Q |
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| T |
35444439 |
gtgaagtaaaacgtgcagctaatccgatcatcatgtgaagtaaaataaagtgcagttaatccactcgaaaaacatataggttggagagcgtataaggtgc |
35444538 |
T |
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| Q |
218 |
attaccatgttattcaata |
236 |
Q |
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||||| |||||||| |||| |
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| T |
35444539 |
attactatgttatttaata |
35444557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 35445668 - 35445746
Alignment:
| Q |
228 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35445668 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
35445746 |
T |
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