View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21077_low_2 (Length: 366)
Name: NF21077_low_2
Description: NF21077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21077_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 30960061 - 30959710
Alignment:
| Q |
20 |
aagcgagaaagacaattttacttgcaacacaaccaatgttttatcatcactataattatttgtgtttgaacaataaccctaatattttgattgtttattc |
119 |
Q |
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| T |
30960061 |
aagcgagaaagacaattttacttgcaacacaaccaatgttttatcatcactataattatttgtgtttgaacaataaccctaatattttgattgtttattc |
30959962 |
T |
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| Q |
120 |
aaggaatttgtgaannnnnnnnn--caacatgatgtttaggggagatgatgcatattgcccggagttgaataatttggatcacaatgaatcacgcaagac |
217 |
Q |
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| T |
30959961 |
aaggaatttgtgaatttttttctttcaacatgatgtttaggggagatgatgcatattgcccggagttgaataatttggatcacaatgaatcacgcaagac |
30959862 |
T |
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| Q |
218 |
a-------------------attcctatatataaagatgtgcatcttggtttatttcttgtttgaaatactctatatcttttcttttgcaaactattttc |
298 |
Q |
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| T |
30959861 |
atttcatgccttgcaagacaattcctatatataaagatgtgcatcttggtttatttcttgtttgaaatactctatatcttttcttttgcaaactattttc |
30959762 |
T |
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| Q |
299 |
ttcactttgttggggtttaccttcttctattttgttttgctttacatgtttt |
350 |
Q |
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| T |
30959761 |
ttcactttgttggggtttaccttcttctattttgttttgctttacatgtttt |
30959710 |
T |
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