View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21077_low_3 (Length: 260)

Name: NF21077_low_3
Description: NF21077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21077_low_3
NF21077_low_3
[»] chr8 (14 HSPs)
chr8 (11-83)||(36524620-36524692)
chr8 (135-254)||(36524500-36524619)
chr8 (14-68)||(38174132-38174186)
chr8 (14-63)||(28418366-28418415)
chr8 (11-63)||(9000902-9000954)
chr8 (14-63)||(30578388-30578437)
chr8 (19-63)||(6849149-6849193)
chr8 (21-59)||(9895147-9895185)
chr8 (14-63)||(38844679-38844728)
chr8 (19-60)||(40671090-40671131)
chr8 (11-63)||(14548713-14548765)
chr8 (137-173)||(25381664-25381700)
chr8 (19-63)||(29108124-29108168)
chr8 (19-63)||(37392016-37392060)
[»] chr3 (22 HSPs)
chr3 (11-68)||(27198037-27198094)
chr3 (11-63)||(36869725-36869777)
chr3 (106-162)||(37228373-37228429)
chr3 (11-63)||(42102368-42102420)
chr3 (14-63)||(47276419-47276468)
chr3 (19-63)||(35987380-35987424)
chr3 (11-63)||(49457696-49457748)
chr3 (108-175)||(28476690-28476757)
chr3 (11-57)||(44127086-44127132)
chr3 (21-59)||(45150157-45150195)
chr3 (14-63)||(8869003-8869052)
chr3 (11-60)||(35376442-35376491)
chr3 (14-63)||(40785587-40785636)
chr3 (14-59)||(45528836-45528881)
chr3 (11-63)||(20216079-20216131)
chr3 (19-63)||(36799537-36799581)
chr3 (14-61)||(53870704-53870751)
chr3 (19-69)||(1031310-1031359)
chr3 (26-63)||(37035762-37035799)
chr3 (14-63)||(42755789-42755838)
chr3 (14-59)||(53715449-53715494)
chr3 (19-59)||(44963846-44963886)
[»] chr4 (16 HSPs)
chr4 (14-63)||(18874812-18874861)
chr4 (11-63)||(23220467-23220519)
chr4 (11-62)||(33860435-33860486)
chr4 (19-63)||(44495884-44495928)
chr4 (11-63)||(48148499-48148551)
chr4 (20-63)||(42510813-42510856)
chr4 (19-63)||(14593195-14593239)
chr4 (19-59)||(16019480-16019520)
chr4 (19-59)||(18880924-18880964)
chr4 (19-63)||(42854080-42854124)
chr4 (19-63)||(44272700-44272744)
chr4 (106-141)||(29744217-29744252)
chr4 (21-59)||(52456821-52456859)
chr4 (19-59)||(2613509-2613549)
chr4 (19-59)||(36123487-36123527)
chr4 (27-63)||(38889023-38889059)
[»] chr5 (15 HSPs)
chr5 (11-63)||(17063996-17064048)
chr5 (11-66)||(3960054-3960109)
chr5 (13-59)||(7766106-7766152)
chr5 (14-63)||(29803357-29803406)
chr5 (11-63)||(41460247-41460299)
chr5 (27-63)||(11880875-11880911)
chr5 (11-59)||(23991362-23991410)
chr5 (19-59)||(35098624-35098664)
chr5 (106-142)||(38139730-38139766)
chr5 (106-141)||(31250029-31250064)
chr5 (14-53)||(41210412-41210451)
chr5 (29-63)||(6420781-6420815)
chr5 (118-167)||(7590758-7590807)
chr5 (19-59)||(14011321-14011361)
chr5 (19-59)||(19824126-19824166)
[»] chr2 (15 HSPs)
chr2 (11-63)||(694400-694452)
chr2 (14-63)||(37631255-37631304)
chr2 (11-63)||(1574584-1574636)
chr2 (21-63)||(13454102-13454144)
chr2 (14-63)||(8555180-8555229)
chr2 (19-60)||(41493213-41493254)
chr2 (19-62)||(3960035-3960078)
chr2 (11-60)||(1052381-1052430)
chr2 (11-63)||(34913219-34913271)
chr2 (19-63)||(36763408-36763452)
chr2 (106-141)||(10349259-10349294)
chr2 (27-63)||(8352982-8353018)
chr2 (19-55)||(28165268-28165304)
chr2 (38-78)||(31578593-31578632)
chr2 (117-149)||(42792560-42792592)
[»] chr7 (18 HSPs)
chr7 (106-157)||(47020898-47020949)
chr7 (26-67)||(44564608-44564649)
chr7 (11-63)||(37392174-37392226)
chr7 (14-61)||(10619589-10619636)
chr7 (11-62)||(28110086-28110137)
chr7 (22-63)||(4971429-4971470)
chr7 (14-60)||(40077389-40077435)
chr7 (14-63)||(4678197-4678246)
chr7 (14-63)||(40693416-40693465)
chr7 (14-62)||(21588816-21588864)
chr7 (19-63)||(31329242-31329286)
chr7 (11-63)||(33056747-33056799)
chr7 (26-65)||(46148312-46148351)
chr7 (26-60)||(45154432-45154466)
chr7 (106-159)||(8145012-8145065)
chr7 (26-63)||(25332388-25332425)
chr7 (19-63)||(10591036-10591080)
chr7 (11-55)||(47905011-47905054)
[»] chr1 (26 HSPs)
chr1 (14-63)||(21255673-21255722)
chr1 (19-63)||(17526559-17526603)
chr1 (11-63)||(23554882-23554934)
chr1 (19-63)||(40605309-40605353)
chr1 (11-63)||(43640875-43640927)
chr1 (106-164)||(3840238-3840296)
chr1 (106-172)||(13645816-13645882)
chr1 (11-60)||(35846770-35846819)
chr1 (19-63)||(6313743-6313787)
chr1 (19-59)||(32939174-32939214)
chr1 (11-63)||(35043608-35043660)
chr1 (19-63)||(47059778-47059822)
chr1 (19-59)||(51168660-51168700)
chr1 (14-63)||(16987581-16987630)
chr1 (14-63)||(40238572-40238621)
chr1 (18-63)||(50142272-50142317)
chr1 (106-162)||(8818211-8818267)
chr1 (11-63)||(32966398-32966450)
chr1 (21-64)||(25988873-25988916)
chr1 (19-57)||(14002636-14002674)
chr1 (19-65)||(33076117-33076163)
chr1 (19-68)||(587038-587087)
chr1 (14-63)||(29253954-29254003)
chr1 (106-162)||(15348461-15348517)
chr1 (19-59)||(16263429-16263469)
chr1 (106-162)||(42790939-42790995)
[»] chr6 (10 HSPs)
chr6 (11-63)||(23653781-23653833)
chr6 (14-64)||(12044464-12044514)
chr6 (19-64)||(18272481-18272526)
chr6 (21-63)||(9188834-9188876)
chr6 (106-159)||(31454783-31454836)
chr6 (11-59)||(32644743-32644791)
chr6 (14-63)||(11742872-11742921)
chr6 (14-63)||(20712200-20712249)
chr6 (23-63)||(6110430-6110470)
chr6 (11-63)||(16743154-16743206)
[»] scaffold0318 (1 HSPs)
scaffold0318 (14-63)||(18179-18228)
[»] scaffold0241 (1 HSPs)
scaffold0241 (14-59)||(5363-5408)
[»] scaffold0005 (1 HSPs)
scaffold0005 (19-63)||(224139-224183)
[»] scaffold0432 (1 HSPs)
scaffold0432 (19-59)||(6547-6587)
[»] scaffold0201 (1 HSPs)
scaffold0201 (19-59)||(8476-8516)
[»] scaffold0085 (1 HSPs)
scaffold0085 (19-59)||(22881-22921)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 36524692 - 36524620
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctcctatatattatcacttgact 83  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36524692 aatgaggctgtcataaaagttgttagcaaatggttgttcaaatatcattgctcctatatattatcacttgact 36524620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 36524619 - 36524500
Alignment:
Q  135 attatttttattttgatcttcttaacaaatgtcttaagggcgttttcnnnnnnnnnnnnnncaaatgtcctaagatattattagaaaattgactatttta 234  Q
    |||||||||||||||||| ||||||||| |||||||||||| |||||              | | |||||||||||||||||||||||||||||||||||    
T  36524619 attatttttattttgatcgtcttaacaagtgtcttaagggccttttcaaaaaataaaaaaaccagtgtcctaagatattattagaaaattgactatttta 36524520  T
Q  235 ttatgtttcgtagatacttg 254  Q
    ||||||||||||||||||||    
T  36524519 ttatgtttcgtagatacttg 36524500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 38174186 - 38174132
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctcctata 68  Q
    |||| ||||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  38174186 gaggttgtcatagaagttgttagcaaatggttgttcaaatatcattgctcttata 38174132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 28418415 - 28418366
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||||||    
T  28418415 gaggttgtcataaaagttgtaagcgaatgattgttcaaatatcattgctc 28418366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 9000954 - 9000902
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| || ||| ||||||||||||||||| ||||||||||||||||||||    
T  9000954 aatgaggttgacattaaagttgttagcaaatggttgttcaaatatcattgctc 9000902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 30578388 - 30578437
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| |||||| |||||||| ||||||| |||||||||||||||||||||    
T  30578388 gaggttgtcatcaaagttgtcagcaaataattgttcaaatatcattgctc 30578437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 6849193 - 6849149
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||||||||||||||| |||||  |||||||||||||||||||    
T  6849193 tgtcataaaagttgttagaaaatggctgttcaaatatcattgctc 6849149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 9895147 - 9895185
Alignment:
Q  21 tcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  9895147 tcatgaaagttgttagcaaatggttgttcaaatatcatt 9895185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 38844728 - 38844679
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| |||||||||| |||||| |||||| ||||||||||||||| ||||    
T  38844728 gaggttgtcataaaaattgttaacaaatggttgttcaaatatcatggctc 38844679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 40671090 - 40671131
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattg 60  Q
    |||||||||||||||||||||||  |||||||||||| ||||    
T  40671090 tgtcataaaagttgttagcaaatagttgttcaaatattattg 40671131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 14548765 - 14548713
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| ||||||  |||||||||||||||  ||||| ||||||||||||||    
T  14548765 aatgaggttgtcattgaagttgttagcaaatagttgttaaaatatcattgctc 14548713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 25381700 - 25381664
Alignment:
Q  137 tatttttattttgatcttcttaacaaatgtcttaagg 173  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  25381700 tatttttatttttatcttcttaaccaatgtcttaagg 25381664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 29108124 - 29108168
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||| ||||||||||| ||||| ||||| ||||||||||||||    
T  29108124 tgtcattaaagttgttagtaaatggttgttaaaatatcattgctc 29108168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 37392060 - 37392016
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||| |||| |||||| |||||| ||||||||||||||||||||    
T  37392060 tgtcaaaaaaattgttaacaaatggttgttcaaatatcattgctc 37392016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 27198094 - 27198037
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctcctata 68  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27198094 aatgaggttgtcataaaagttgttagcaaatgattgttcaaatatcattgctcttata 27198037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 36869777 - 36869725
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  36869777 aatgaggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 36869725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 37228373 - 37228429
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattatttttattttgatcttcttaacaa 162  Q
    |||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||    
T  37228373 aattgacttttgcttcattaaactcatcaattatttctatttttgtcttcttaacaa 37228429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 42102368 - 42102420
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  42102368 aatgaggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 42102420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 47276419 - 47276468
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| ||||||| |||||||||||| ||||||||||||||||||||||||    
T  47276419 gaggttgtcatagaagttgttagcacatgattgttcaaatatcattgctc 47276468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 35987380 - 35987424
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||||||| |||| |||||||||||||||||||||||||||||    
T  35987380 tgtcataaaaattgtaagcaaatgattgttcaaatatcattgctc 35987424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 49457696 - 49457748
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| ||||||| ||||| |||||||||| ||||||||||||||||||||    
T  49457696 aatgaggttgtcatagaagttattagcaaatgtttgttcaaatatcattgctc 49457748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 28476690 - 28476757
Alignment:
Q  108 ttgacttttgtttcattaaactcatcaattatttttattttgatcttcttaacaaatgtcttaagggc 175  Q
    ||||| |||| ||||||||||||||||||||||| || |||  |||||||||||| |||| |||||||    
T  28476690 ttgacgtttgcttcattaaactcatcaattatttctacttttgtcttcttaacaagtgtcataagggc 28476757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 44127132 - 44127086
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatca 57  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||    
T  44127132 aatgaggttgtcataaaagttgttagcaaatagttgttcaaatatca 44127086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 45150195 - 45150157
Alignment:
Q  21 tcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  45150195 tcatgaaagttgttagcaaatgattgttcaaatatcatt 45150157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 8869003 - 8869052
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| ||||||||||||| || ||||||| ||||||||||||||||||||    
T  8869003 gaggttgtcataaaagttattggcaaatggttgttcaaatatcattgctc 8869052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 35376491 - 35376442
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattg 60  Q
    ||||||| ||||||||||||||||| |||||| || ||||||||||||||    
T  35376491 aatgaggttgtcataaaagttgttaacaaatggttcttcaaatatcattg 35376442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 40785636 - 40785587
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  40785636 gaggttgtcatcaaagtcgttagcaaatggttgttcaaatatcattgctc 40785587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 45528881 - 45528836
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    |||| ||||||| |||||||||||||||| ||||||||||||||||    
T  45528881 gaggttgtcatagaagttgttagcaaatggttgttcaaatatcatt 45528836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 20216079 - 20216131
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| ||||| |||| ||||||| ||||| ||||||||||||||||||||    
T  20216079 aatgaggttgtcacaaaaattgttagtaaatggttgttcaaatatcattgctc 20216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36799537 - 36799581
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||||    
T  36799537 tgtcatgaaacttgttagcaaatgtttgttcaaatatcattgctc 36799581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 53870704 - 53870751
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgc 61  Q
    |||| |||||| |||||||||||||||||||||| ||||||| |||||    
T  53870704 gaggttgtcatcaaagttgttagcaaatgattgtgcaaatattattgc 53870751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 1031359 - 1031310
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctcctatat 69  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||| |||||    
T  1031359 tgtcataaaagttgt-accaaataattgttcaaatatcattgctcatatat 1031310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 37035762 - 37035799
Alignment:
Q  26 aaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  37035762 aaagttgttagcaaatagttgttcaaatatcattgctc 37035799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 42755789 - 42755838
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| |||||||||| || || |||||||||| |||||||||||||||||    
T  42755789 gaggttgtcataaaaattattcgcaaatgattattcaaatatcattgctc 42755838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 53715449 - 53715494
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    |||| ||||||||||||||||| |||||  ||||||||||||||||    
T  53715449 gaggttgtcataaaagttgttatcaaatagttgttcaaatatcatt 53715494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 44963846 - 44963886
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    ||||| |||||||||||| ||||||||||||| ||||||||    
T  44963846 tgtcacaaaagttgttagaaaatgattgttcagatatcatt 44963886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 18874861 - 18874812
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18874861 gaggttgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 18874812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 23220467 - 23220519
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  23220467 aatgaggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 23220519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 33860486 - 33860435
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgct 62  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||||||||    
T  33860486 aatgaggttgtcatcaaagttgttagcaaatggttgttcaaatatcattgct 33860435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 44495928 - 44495884
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  44495928 tgtcatagaagttgttagcaaatggttgttcaaatatcattgctc 44495884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 48148499 - 48148551
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| | |||||||||||||||||||||| ||||||||||| ||||||||    
T  48148499 aatgaggttatcataaaagttgttagcaaatggttgttcaaataccattgctc 48148551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 42510856 - 42510813
Alignment:
Q  20 gtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||    
T  42510856 gtcatcaaagttgttagcaaatggttgttcaaatatcattgctc 42510813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 14593239 - 14593195
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||    
T  14593239 tgtcatcaaagttgttagcaaattgttgttcaaatatcattgctc 14593195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 16019520 - 16019480
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  16019520 tgtcataaaagttgttagaaaatgattgtacaaatatcatt 16019480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 18880924 - 18880964
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  18880924 tgtcataaaagttgtaagcaaattattgttcaaatatcatt 18880964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 42854080 - 42854124
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||||||||| ||| ||||||||||||||||||||    
T  42854080 tgtcatagaagttgttagcacatggttgttcaaatatcattgctc 42854124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 44272744 - 44272700
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||||    
T  44272744 tgtcatcaaaattgttagcaaatggttgttcaaatatcattgctc 44272700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 29744217 - 29744252
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattattt 141  Q
    |||||||||||| |||||||||||||||||||||||    
T  29744217 aattgacttttgcttcattaaactcatcaattattt 29744252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 52456859 - 52456821
Alignment:
Q  21 tcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  52456859 tcattaaagttgttagcaaataattgttcaaatatcatt 52456821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 2613549 - 2613509
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    ||||| ||||||||||| |||||| ||||||||||||||||    
T  2613549 tgtcacaaaagttgttatcaaatggttgttcaaatatcatt 2613509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 36123487 - 36123527
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    |||||||||||||||||  |||||||||| |||||||||||    
T  36123487 tgtcataaaagttgttataaaatgattgtacaaatatcatt 36123527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 38889023 - 38889059
Alignment:
Q  27 aagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  38889023 aagttgttaacaaataattgttcaaatatcattgctc 38889059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 17063996 - 17064048
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  17063996 aatgaggttgtcataaaagttgttagcaaatgattgttcaagtatcattgctc 17064048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 3960109 - 3960054
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctccta 66  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  3960109 aatgaggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctccta 3960054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 7766106 - 7766152
Alignment:
Q  13 tgaggctgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  7766106 tgaggttgtcatgaaagttgttagcaaatgattgttcaaatatcatt 7766152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 29803357 - 29803406
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  29803357 gaggttgtcatcaaagttgttagcaaataattgttcaaatatcattgctc 29803406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 41460247 - 41460299
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||| |||||||    
T  41460247 aatgaggttgtcatgaaagttgttagcaaatggttgttcaaatattattgctc 41460299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 11880911 - 11880875
Alignment:
Q  27 aagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||||||||||||||||||| ||||||||||||||    
T  11880911 aagttgttagcaaatgattgttaaaatatcattgctc 11880875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 23991362 - 23991410
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    ||||||| | ||| |||||||||||||||||| ||||||||||||||||    
T  23991362 aatgaggttctcaaaaaagttgttagcaaatggttgttcaaatatcatt 23991410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 35098664 - 35098624
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  35098664 tgtcataaaaattattagcaaatgattgttcaaatatcatt 35098624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 38139730 - 38139766
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattatttt 142  Q
    |||||||||||||||||||||| ||||||||||||||    
T  38139730 aattgacttttgtttcattaaattcatcaattatttt 38139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 31250029 - 31250064
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattattt 141  Q
    |||||| |||||||||||||||||||||||||||||    
T  31250029 aattgatttttgtttcattaaactcatcaattattt 31250064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 41210451 - 41210412
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaat 53  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  41210451 gaggttgtcataaaagttgttagcaaatggttgttcaaat 41210412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 6420781 - 6420815
Alignment:
Q  29 gttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||||||||||| ||||||||||||||||||||    
T  6420781 gttgttagcaaatgtttgttcaaatatcattgctc 6420815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 7590807 - 7590758
Alignment:
Q  118 tttcattaaactcatcaattatttttattttgatcttcttaacaaatgtc 167  Q
    |||||||||| ||||||||||||| |||||| |||| ||||| |||||||    
T  7590807 tttcattaaattcatcaattatttatattttaatctccttaataaatgtc 7590758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 14011361 - 14011321
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    ||||| |||||||||||  ||||||||||||||||||||||    
T  14011361 tgtcacaaaagttgttacaaaatgattgttcaaatatcatt 14011321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 19824166 - 19824126
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    ||||||| ||||||||| |||||| ||||||||||||||||    
T  19824166 tgtcatagaagttgttaacaaatggttgttcaaatatcatt 19824126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 694400 - 694452
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  694400 aatgaggttgtcataaaagttattagcaaatgattgttcaaatatcattgctc 694452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 37631304 - 37631255
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  37631304 gaggttgtcataaaagttgttagcaaatggttgttcaaatatcattgctc 37631255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 1574584 - 1574636
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  1574584 aatgaggttgtcattaaagttgttagcaaatggttgttcaaatatcattgctc 1574636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 13454102 - 13454144
Alignment:
Q  21 tcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  13454102 tcataaaagttgttaacaaatgattgttcaaatatcattgctc 13454144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 8555229 - 8555180
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  8555229 gaggttgtcataaaagttgttggcaaataattgttcaaatatcattgctc 8555180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 41493213 - 41493254
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattg 60  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  41493213 tgtcatagaagttgttagcaaatgattgttcaaatatcattg 41493254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 3960035 - 3960078
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgct 62  Q
    |||||||||||||||| ||||||| |||||||||||||||||||    
T  3960035 tgtcataaaagttgttcgcaaatggttgttcaaatatcattgct 3960078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 1052430 - 1052381
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattg 60  Q
    ||||||| |||||| ||||||||||||||||| ||||| |||||||||||    
T  1052430 aatgaggttgtcattaaagttgttagcaaatggttgttaaaatatcattg 1052381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 34913219 - 34913271
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| ||||||  |||||||||||||||| ||||| ||||||||||||||    
T  34913219 aatgaggttgtcattgaagttgttagcaaatggttgttaaaatatcattgctc 34913271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 36763452 - 36763408
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||||||| |||||| |||||| ||||||||||||||||||||    
T  36763452 tgtcataaaaattgttaacaaatggttgttcaaatatcattgctc 36763408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 10349259 - 10349294
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattattt 141  Q
    |||||||||||| |||||||||||||||||||||||    
T  10349259 aattgacttttgattcattaaactcatcaattattt 10349294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 8352982 - 8353018
Alignment:
Q  27 aagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  8352982 aagttgttagcaaatggttgttaaaatatcattgctc 8353018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 28165268 - 28165304
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatat 55  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  28165268 tgtcatgaaagttgttagcaaatggttgttcaaatat 28165304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 31578593 - 31578632
Alignment:
Q  38 aaatgattgttcaaatatcattgctcctatatattatcact 78  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  31578593 aaatgattgttcaaatatcattgct-ctatataatatcact 31578632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 42792592 - 42792560
Alignment:
Q  117 gtttcattaaactcatcaattatttttattttg 149  Q
    ||||||||||||||||||||||||| |||||||    
T  42792592 gtttcattaaactcatcaattatttctattttg 42792560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 47020898 - 47020949
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattatttttattttgatcttctt 157  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  47020898 aattgacttttgtttcattaaactcatcaattatttttatttttgtcttctt 47020949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 44564649 - 44564608
Alignment:
Q  26 aaagttgttagcaaatgattgttcaaatatcattgctcctat 67  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44564649 aaagttgttagcaaatgattgttcaaatatcattgctcctat 44564608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 37392174 - 37392226
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  37392174 aatgaggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 37392226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 10619636 - 10619589
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgc 61  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  10619636 gaggttgtcataaaagttgttagcaaatggttgttcaaatatcattgc 10619589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 28110086 - 28110137
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgct 62  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||||||||    
T  28110086 aatgaggtcgtcataaaagttgttagcaaatggttgttcaaatatcattgct 28110137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 4971429 - 4971470
Alignment:
Q  22 cataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  4971429 cataaaagttgttagcaaatggttgttcaaatatcattgctc 4971470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 40077389 - 40077435
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattg 60  Q
    |||| ||||||||||||||||| |||||| |||||||||||||||||    
T  40077389 gaggttgtcataaaagttgttaacaaatggttgttcaaatatcattg 40077435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 4678197 - 4678246
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| |||||| ||||||||||||||||| ||||| ||||||||||||||    
T  4678197 gaggttgtcatcaaagttgttagcaaatggttgtttaaatatcattgctc 4678246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 40693465 - 40693416
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| ||||||| |||||||||||| ||| ||||||||||||||||||||    
T  40693465 gaggttgtcatagaagttgttagcacatggttgttcaaatatcattgctc 40693416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 21588864 - 21588816
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgct 62  Q
    |||| ||||||| |||||||||||| ||| |||||||||||||||||||    
T  21588864 gaggttgtcatagaagttgttagcacatggttgttcaaatatcattgct 21588816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 31329286 - 31329242
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||    
T  31329286 tgtcataaaagttgttagtaaatggttgttcaaatattattgctc 31329242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 33056747 - 33056799
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||| ||| || |||||||||| ||||||||||||||||||||    
T  33056747 aatgaggttgtcattaaaattattagcaaatggttgttcaaatatcattgctc 33056799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 46148312 - 46148351
Alignment:
Q  26 aaagttgttagcaaatgattgttcaaatatcattgctcct 65  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  46148312 aaagttgttaacaaatggttgttcaaatatcattgctcct 46148351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 45154466 - 45154432
Alignment:
Q  26 aaagttgttagcaaatgattgttcaaatatcattg 60  Q
    ||||||||||||||||| |||||||||||||||||    
T  45154466 aaagttgttagcaaatggttgttcaaatatcattg 45154432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 8145012 - 8145065
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattatttttattttgatcttcttaa 159  Q
    ||||||||||| ||| |||||| ||||||||||||| ||||||  |||||||||    
T  8145012 aattgacttttattttattaaattcatcaattatttatattttcgtcttcttaa 8145065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 25332425 - 25332388
Alignment:
Q  26 aaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  25332425 aaagttgttagcaaatggttgttcaaatattattgctc 25332388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 10591080 - 10591036
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||||||||||| | |||||  ||||||||||||||||||||    
T  10591080 tgtcataaaagttgtcaccaaatagttgttcaaatatcattgctc 10591036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 47905054 - 47905011
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatat 55  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||||    
T  47905054 aatgaggttgtcatagaagttgttagcaaatg-ttgttcaaatat 47905011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 21255722 - 21255673
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  21255722 gaggttgtcataaaagttgttagcaaatggttgttcaaatatcattgctc 21255673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 17526559 - 17526603
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  17526559 tgtcataaaaattgttagcaaatgattgttcaaatatcattgctc 17526603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 23554882 - 23554934
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  23554882 aatgaggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 23554934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 40605353 - 40605309
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  40605353 tgtcataaaagttgttagcaaatggttgttcaaatatcattgctc 40605309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 43640927 - 43640875
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  43640927 aatgaggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 43640875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 3840296 - 3840238
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattatttttattttgatcttcttaacaaat 164  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||  ||||||||||||||    
T  3840296 aattgatttttgcttcattaaacttatcaattatttttatttttgtcttcttaacaaat 3840238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 13645882 - 13645816
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattatttttattttgatcttcttaacaaatgtcttaag 172  Q
    ||||||||||   ||||||||||||||||||||||| |||||| |||||||||| ||||||| ||||    
T  13645882 aattgactttgacttcattaaactcatcaattatttctatttttatcttcttaataaatgtcctaag 13645816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 35846819 - 35846770
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattg 60  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||||||    
T  35846819 aatgaggttatcataaaagttgttagcaaatggttgttcaaatatcattg 35846770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 6313743 - 6313787
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||    
T  6313743 tgtcattaaagttgttagcaaatgattgttcaaatatcatagctc 6313787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 32939214 - 32939174
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  32939214 tgtcataaaagttgttagcaaatggttgttcaaatatcatt 32939174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 35043660 - 35043608
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||    
T  35043660 aatgaggttgtcatgaaaattgttagcaaatggttgttcaaatatcattgctc 35043608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 47059822 - 47059778
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||    
T  47059822 tgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 47059778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 51168700 - 51168660
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  51168700 tgtcataaaagttgttagcaaatggttgttcaaatatcatt 51168660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 16987581 - 16987630
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| ||||||| || ||||||||||||| ||||||||||||||||||||    
T  16987581 gaggttgtcatagaaattgttagcaaatggttgttcaaatatcattgctc 16987630  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 40238572 - 40238621
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| |||||| |||||||||| ||||||||||||||||||| |||||||    
T  40238572 gaggttgtcatcaaagttgttaacaaatgattgttcaaatatgattgctc 40238621  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 50142272 - 50142317
Alignment:
Q  18 ctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||    
T  50142272 ctgtcataaaaattgtcatcaaatgattgttcaaatatcattgctc 50142317  T

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Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 8818267 - 8818211
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattatttttattttgatcttcttaacaa 162  Q
    ||||||||||||||||||||||||| ||||||||||   ||||  ||||||||||||    
T  8818267 aattgacttttgtttcattaaactcgtcaattatttccttttttgtcttcttaacaa 8818211  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 32966398 - 32966450
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| ||||| |||||||||||| ||||  ||||||||||||||||||||    
T  32966398 aatgaggttgtcacaaaagttgttagtaaatagttgttcaaatatcattgctc 32966450  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 25988916 - 25988873
Alignment:
Q  21 tcataaaagttgttagcaaatgattgttcaaatatcattgctcc 64  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||    
T  25988916 tcattaaagttgttagcaaatggttgttaaaatatcattgctcc 25988873  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 14002674 - 14002636
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatca 57  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  14002674 tgtcataaaagttgttagcaaatagttgttcaaatatca 14002636  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 33076163 - 33076117
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctcct 65  Q
    |||||||||||||||||| ||||| |||| ||||||||||| |||||    
T  33076163 tgtcataaaagttgttagaaaatggttgtacaaatatcatttctcct 33076117  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 587038 - 587087
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctcctata 68  Q
    ||||| |||||||||||| ||||  |||||||||||||||||||| ||||    
T  587038 tgtcacaaaagttgttagtaaatagttgttcaaatatcattgctcttata 587087  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 29254003 - 29253954
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| ||||||  |||||||||||||||  ||||||||||||||||||||    
T  29254003 gaggttgtcattgaagttgttagcaaatagttgttcaaatatcattgctc 29253954  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 15348461 - 15348517
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattatttttattttgatcttcttaacaa 162  Q
    |||||| ||||| || ||||||||||||||||||||  | ||| |||||||||||||    
T  15348461 aattgatttttgatttattaaactcatcaattatttccacttttatcttcttaacaa 15348517  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 16263469 - 16263429
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    |||||||||||||||||| |||| ||||| |||||||||||    
T  16263469 tgtcataaaagttgttagaaaataattgtacaaatatcatt 16263429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 42790995 - 42790939
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattatttttattttgatcttcttaacaa 162  Q
    |||||||||||||||||| ||| ||||||||||||| | || |  ||||||||||||    
T  42790995 aattgacttttgtttcatcaaattcatcaattatttcttttcttgtcttcttaacaa 42790939  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 23653833 - 23653781
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| |||||||    
T  23653833 aatgaggttgtcataaaagttgttagcaaatggttgttcaaatattattgctc 23653781  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 12044464 - 12044514
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctcc 64  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||||||||    
T  12044464 gaggttgtcataaaagttgttagcacatggttgttcaaatatcattgctcc 12044514  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 18272481 - 18272526
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctcc 64  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||    
T  18272481 tgtcataaaaattgttagcaaatgattgttcaaataacattgctcc 18272526  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 9188876 - 9188834
Alignment:
Q  21 tcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  9188876 tcataaaagttgttagcaaatggttgtttaaatatcattgctc 9188834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 31454783 - 31454836
Alignment:
Q  106 aattgacttttgtttcattaaactcatcaattatttttattttgatcttcttaa 159  Q
    |||||||||||  ||||||||| | |||||||||||||| ||||||||||||||    
T  31454783 aattgacttttacttcattaaatttatcaattatttttaatttgatcttcttaa 31454836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 32644743 - 32644791
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    ||||||| ||||||| |||||||||||| ||| ||||||||||||||||    
T  32644743 aatgaggttgtcatagaagttgttagcacatggttgttcaaatatcatt 32644791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 11742921 - 11742872
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| ||||||| |||||||||||| ||| || |||||||||||||||||    
T  11742921 gaggttgtcatagaagttgttagcacatggttcttcaaatatcattgctc 11742872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 20712200 - 20712249
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| ||||||| ||||||||| |||||| ||||||||||||||| ||||    
T  20712200 gaggttgtcatagaagttgttaacaaatggttgttcaaatatcatagctc 20712249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 6110470 - 6110430
Alignment:
Q  23 ataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||| ||||||||||||  ||||||||||||||||||||    
T  6110470 ataaaaattgttagcaaatagttgttcaaatatcattgctc 6110430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 16743206 - 16743154
Alignment:
Q  11 aatgaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    ||||||| ||||||  |||||||||||||||  ||||| ||||||||||||||    
T  16743206 aatgaggttgtcattgaagttgttagcaaattgttgttaaaatatcattgctc 16743154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 18228 - 18179
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||||||    
T  18228 gaggttgtcataaaagttgtaagcaaatggttgttcaaatatcattgctc 18179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 5363 - 5408
Alignment:
Q  14 gaggctgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  5363 gaggctgtcatgaaagttgttagcaaatggttgttcaaatatcatt 5408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 224139 - 224183
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 63  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||    
T  224139 tgtcatcaaagttgttagcaaattgttgttcaaatatcattgctc 224183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 6547 - 6587
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    ||||| |||||||||||  ||||||||||||||||||||||    
T  6547 tgtcacaaaagttgttaaaaaatgattgttcaaatatcatt 6587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 8516 - 8476
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  8516 tgtcataaaaattgttaaaaaatgattgttcaaatatcatt 8476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 22881 - 22921
Alignment:
Q  19 tgtcataaaagttgttagcaaatgattgttcaaatatcatt 59  Q
    ||||||||||||||| |  ||||||||||||||||||||||    
T  22881 tgtcataaaagttgtcacaaaatgattgttcaaatatcatt 22921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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