View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_high_11 (Length: 365)
Name: NF21078_high_11
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 27360251 - 27359891
Alignment:
| Q |
1 |
ctaccaatttgatagtagagcattgtgttcataaaatgaaa-ttctgttgattccattgcttgtatcgctaggtgttagcggtcctgttttgtagcgagt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27360251 |
ctaccaatttgatagtagagcattgtgttcataaaatgaatgttctgttgattccattgcttgtatcgctaggtgttagcggtcctcttttgtagcgagt |
27360152 |
T |
|
| Q |
100 |
tgagtggatttgccttttctcttcttctgtgttgtatccattgtacaccttgtttaatataat-agttgtttctgctggttataaaaaagagtatttttc |
198 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27360151 |
tgagtggatttgccttt-ctcttcttctgtgttgtatccattgtacaccttgtttaatataattagttgtttctgctggttataaaaaagagtatttttc |
27360053 |
T |
|
| Q |
199 |
taggtgttggaatgttgggttcttttgtgcagagaatgctcctctcaaggtgtacacc-----------ttaacaaacatttttcttaattttggagtat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
27360052 |
aaggtgttggaatgttgggttcttttgtgcagagaatgctcctctcaaggtgtacacctattgaggtgtttaacaaacatttttcttaattttgaagtat |
27359953 |
T |
|
| Q |
288 |
gttttatcttgggaaagac-aatgttgcacatacgagtcacagttgcataacgttttataag |
348 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27359952 |
gttttatcttgggaaagacaaatgttgcacatacgagtcacagttgcataacgttttataag |
27359891 |
T |
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