View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21078_high_18 (Length: 293)
Name: NF21078_high_18
Description: NF21078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21078_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 10698336 - 10698621
Alignment:
| Q |
1 |
acaatataggagaaaactagcaatagacgctaacgttatctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaacctagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10698336 |
acaatataggagaaaactagcaatagacactaacgttatctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaaccaagg |
10698435 |
T |
|
| Q |
101 |
agtacaaagaaaataaaggctacaaggccatgttgaggattagtttccactcccatgatgttattatatacatgaacacttcctacaacattaatggtca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10698436 |
agtacaaagaaaataaaggctacaaggccatgttgaggattagtttccattcccatgatgttattatatacatgaacacttcctacaacattaatggtca |
10698535 |
T |
|
| Q |
201 |
cttcatgacctctatgaaaattggattttagccttaccacattagccatgatattgaaactagctactagtagttctttcttttca |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
10698536 |
cttcatgacctctatgaaaattggattttagccttaccacattagccatgatatttaaactagctactagtagttcttttttttca |
10698621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 10690404 - 10690650
Alignment:
| Q |
2 |
caatataggagaaaactagcaatagacgctaacgttatctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaacctagga |
101 |
Q |
| |
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|||||||| ||||| ||||||||||| | |||||| |||||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||| |||| |
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| T |
10690404 |
caatatagtagaaagctagcaatagataccaacgttgtctttggatggacttgaaaaggggtaggattttctggatatctaacttggaggaaaccaagga |
10690503 |
T |
|
| Q |
102 |
gtacaaagaaaataaaggctacaaggccatgttgaggattagtttccactcccatgatgttattatatacatgaacacttcctacaacattaatggtcac |
201 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||| |
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| T |
10690504 |
gtacaaagaaaatgaaggctacaaggccatgttgaggattagtttctactcccatgatgttttt---gacatgaacacttcctacaacatttatggtcac |
10690600 |
T |
|
| Q |
202 |
ttcatgacctctatgaaaattggattttagccttaccacattagccatga |
251 |
Q |
| |
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||||||||||||| |||||||||| || | |||||||||| | |||||| |
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| T |
10690601 |
ttcatgacctctaagaaaattggaccttggacttaccacatcacccatga |
10690650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 10707585 - 10707750
Alignment:
| Q |
41 |
tttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaacctaggagtacaaagaaaataaaggctacaaggccatgttgaggat |
140 |
Q |
| |
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||||||||||||||||||| || ||||| ||||| || |||||||||||||| | ||||||||||||||||| ||||| | ||||| |||| |||| | |
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| T |
10707585 |
tttggatggatttgaaatgcagtgggattatctggataagtaatttggaggaaagcaaggagtacaaagaaaatgaaggccataaggctatgtagagggt |
10707684 |
T |
|
| Q |
141 |
tagtttccactcccatgatgttattatatacatgaacacttcctacaacattaatggtcacttcatgac |
209 |
Q |
| |
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| ||||| |||||||||||| || || |||| |||| | ||||||||| |||||||||||||||| |
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| T |
10707685 |
tggtttctactcccatgatg---ttgtaaacattaacaacacttacaacatttatggtcacttcatgac |
10707750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 10634052 - 10634170
Alignment:
| Q |
2 |
caatataggagaaaactagcaatagacgctaacgttatctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaacctagga |
101 |
Q |
| |
|
|||||||| | ||||||||| ||||| | ||| || |||||||||||| || ||| | ||| ||||||||||| |||| ||||||||||||||| | || |
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| T |
10634052 |
caatatagtaaaaaactagccatagagacaaacattgtctttggatggacttcaaacgaggttggattttctggatatcgaatttggaggaaaccaatga |
10634151 |
T |
|
| Q |
102 |
gtacaaagaaaataaaggc |
120 |
Q |
| |
|
||||||| ||||| ||||| |
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| T |
10634152 |
gtacaaaaaaaatgaaggc |
10634170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 10657664 - 10657789
Alignment:
| Q |
39 |
tctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaacctaggagtacaaagaaaataaaggctacaaggccatgttgagg |
138 |
Q |
| |
|
||||||||||| |||||||| || ||||| | ||| || |||||||| |||||||| | ||| |||||||||| |||| | ||||||||| |||| |
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| T |
10657664 |
tctttggatgggcttgaaatgcagtgggattatttggataactaatttgaaggaaaccaatgaggacaaagaaaaggaaggtcataaggccatggagagg |
10657763 |
T |
|
| Q |
139 |
attagtttccactcccatgatgttat |
164 |
Q |
| |
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||| ||||| |||||||||||||||| |
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| T |
10657764 |
attggtttctactcccatgatgttat |
10657789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 10693787 - 10693860
Alignment:
| Q |
39 |
tctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaacctaggagtacaaagaaa |
112 |
Q |
| |
|
||||||||||||||||||||| | || || ||||| || || |||||||||||||| ||||||||||||||| |
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|
| T |
10693787 |
tctttggatggatttgaaatgcactgggtttatctggataactgatttggaggaaaccaaggagtacaaagaaa |
10693860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 10602605 - 10602668
Alignment:
| Q |
46 |
atggatttgaaatggggtaggattttctgggtatctaatttggaggaaacctaggagtacaaag |
109 |
Q |
| |
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|||||||||||||||||| ||||||| |||||| | | |||||||||||| | |||||||||| |
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| T |
10602605 |
atggatttgaaatggggtgggattttgagggtattttaattggaggaaaccaatgagtacaaag |
10602668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 33777409 - 33777246
Alignment:
| Q |
1 |
acaatataggagaaaactagcaatagacgctaacgttatctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaacctagg |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||| | ||| || |||||||||||| ||||||| || ||||| ||||| || |||||||| |||||||| | | |
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|
| T |
33777409 |
acaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatg |
33777310 |
T |
|
| Q |
101 |
agtacaaagaaaataaaggctacaaggccatgttgaggattagtttccactcccatgatgttat |
164 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||| |||||| ||||| || ||||||||||||| |
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|
| T |
33777309 |
agtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttat |
33777246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 33774769 - 33774608
Alignment:
| Q |
2 |
caatataggagaaaa-ctagcaatagacgctaacgttatctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaacctagg |
100 |
Q |
| |
|
|||||||| |||||| |||||||||| | ||| || |||||||||||| ||||||| || ||||| ||||| || |||||||| |||||||| | | |
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| T |
33774769 |
caatatagtagaaaagctagcaatagtgacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatg |
33774670 |
T |
|
| Q |
101 |
agtacaaagaaaataaaggctacaaggccatgttgaggattagtttccactcccatgatgttat |
164 |
Q |
| |
|
||| | ||||||| ||||| | ||||||||| | |||| ||||| |||||||||||||||| |
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|
| T |
33774669 |
agtcc--agaaaatgaaggccataaggccatgaaaatgattggtttctactcccatgatgttat |
33774608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 15240428 - 15240253
Alignment:
| Q |
3 |
aatataggagaaaactagcaatagacgctaacgttatctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaacctaggag |
102 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| || |||||||||||| |||||| || ||||| ||||| || | |||||||| ||||||| || |
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| T |
15240428 |
aatatagtagaaagctagcaatagagactaacattgtctttggatggagttgaaagactgtgggattatctggataacagatttggagaaaacctataag |
15240329 |
T |
|
| Q |
103 |
tacaaagaaaataaaggctacaaggccatgttgaggattagtttccactcccatgatgttattatatacatgaaca |
178 |
Q |
| |
|
||| | ||||| ||||| ||||| ||||| ||| ||| ||| | | |||||||||||| |||| |||||||||| |
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|
| T |
15240328 |
cacataaaaaatgaaggccacaagaccatgaagagaattggttgctattcccatgatgttgttatgtacatgaaca |
15240253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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